Clone LD47749 Report

Search the DGRC for LD47749

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:477
Well:49
Vector:pOT2
Associated Gene/TranscriptCG9799-RA
Protein status:LD47749.pep: gold
Sequenced Size:2948

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9799 2004-10-02 Blastp of sequenced clone
CG9799 2008-04-29 Release 5.5 accounting
CG9799 2008-08-15 Release 5.9 accounting
CG9799 2008-12-18 5.12 accounting

Clone Sequence Records

LD47749.complete Sequence

2948 bp assembled on 2006-11-09

GenBank Submission: BT016079

> LD47749.complete
GCAGTAAACATTTTCGGCATGTTGCGGAAATCGTTTATATTAGCTTAAAA
AATCGATAAAAAGACAGAAAGAGACATTTCGGACAGTAAAATGACGCATC
TGCGGTCGGAGGATAAGCCACAGTCGGAGGAGCGGAAGTCTGTGTTCAAG
GAGAGCAGCTGCATCTTCCGGCGGAATCGAGCCCTCGGCTATGTGAGCAA
CCAGGTTCCAGCAGTCACCCGCTACGTGCAGCGTCGTCGGGACACTTTGC
TGATCACCTGCATCGGCAGATCTTTTCAGGTGTACACCGCCAACCACTTT
CGCCTGCTGCACGTTAGCGGATTGCATCCGGACGAGATTACGGCTCTGGC
CACGGATCGACTGCACACGTACACGGCGAGCAACAAGTGTATCTACGCCT
GGCGGGCGGGCAAACACATCCGGCACGTGTACCGTGGCCACCAGAAAGAT
GTCCACCTCCTGCTGCCTTTTGGTTCCAGTTTGATAGCCATCGATAGGCA
GAATGTGTTAAAAGTGTGGAATATTTCAACCGAGGATGTCTATTTGGAAG
TGCCCTTCCGGTCTGAGGAGTTCCAGATCACAGCTGTGACCCATCCGCCC
ACGTACATCAATAAAATAGTACTAGGCTCCCAGCAGGGCCAACTAAAGAT
CTTGAACATAAAGAAGAACAGTGTGGTGTGCACTTTGAGTCACCACGACA
GCAGGATCACCTGCATTGAACCGTCCCCTGCTTTGGATGTCGTGGCCGTG
GGACACGGGGATGGCACTATTATCTTGCTTAACCTTAAGTTCGACGAGGT
GCTTATGAGCTTCCAGCAGGATTGGGGTCAGGTCACCAACCTTTCCTTCC
GTACCGACGGCCCACCAATCCTTGTGTCCGCCTGCAGCAATGGTTACATG
GCCTTCTGGAACCTGGAGGAGCGCAAGTTAGCCGGTCAGCTGCAAGCGCA
CGAGGAGTCGGTGACCACGGCCATTTGTCTGCCCAGCGAGCCCGTGGTCT
TCACCACTTCACCAGACAATTCAATGAGGATGTTTGTTTTCGATATGCCA
GATGGTGGTGCCAGACAGCTGAGGATCCGCGAGGGACACACAAAGCCGCC
GTTTTGTATTCGCTACCACGGCAGCTCGGGCGTATCCATTCTCTCTTCGG
GCGAGGACAGCACCATGAGAGTCTTCTCCACCATTTCCGAATCGCTGAAC
AAGAGCATGGGCAGGGCTACCTACAATCCAAAAGCCACAAAGAAGAAGAA
TCGCTTTGAGCACGATAAGTTTGGAATGCCACCCATACTGGAGTTCACAT
CGGATACGGCTCGCGAAAAGGAGTGGGATAACATCGCTGCCATCCATGCG
GGCGTTATTCAGACGACAACCTGGTCGTTTGGCAAGAACCGTATGGGCGA
GCACCGCCTGGTTCCGAAACAGTTCCAAAACAGCAACCGCACCAACTTCC
AGAACGAGACCACATGCATTGTGCTGACGCACTGTGGCAACTTTGTGATC
ATTGGCTATAGCAGTGGCGACATTGAGCGCTTTAATATCCAGTCTGGACT
CCATCGGGCTACCTATGGCTCTCCAGCCCACAAGATGGCAGTACGCGGCT
TGGCCAGCGACAATCTTAACCAAACCGTCATCTCTGGCTGTTCGGAAGGC
TTGCTCAAGTTCTGGTCATTCAAAGGAAAGGTTGACAAGCCCTTAGCGAC
TCTACGCCTGGCAGATGGAATCGCCCTGATTCGACAGCACCGAGAGAGCT
CCATGCTGGCCATTGGTCTGGAAACATTCAAGATTTTTGTCGTAGACATG
CACACGAGGGTCATTGTTCGCAAGTTCGTCGGTCACACAGCCAAGCTGAA
TGACCTCACTTTCAGTCCGGATAGCCGCTGGCTGATCACCGCCGCCATGG
ACTCCACGATCAAGGTGTGGGACATACCTTCCTCCTACATGGTGGATCAC
TTCCGCGTCGAGGCGCCTTGCGTATCGTTAAGTATGTCGCCTAATGGCGA
CTTTCTGGCCACCGCACATGTTGGACTTTTGGGCATTTACCTGTGGGCCA
ACAAGACGCTGTTTAATCAGATTTCCCTGCGCTCCATCGATCCTTTGGAG
CCGGCTCCGTACGTGGGATTGCCCACGAATGTGTGCGATGCCATGGAACT
GGAAGATGGCATGAAGGAGCTAGAGATCGACGAAGAGGACGAGTCAAAAC
TCGGCGAGCTAGTTGACACCAAGTACGAAACTCCAACGCAGCTGTCCGAG
GAACTGATAACGCTATCCGGGTTGGCTGCATCCCGTTGGCAGAATCTATT
GGATTTGGAGCTAATCAAGCAACGTAACAAGCCCAAGGCACCACCAAAAG
CTCCCAAACAGGCCCCATTCTTCCTGCCCACGGTTTCGGGACTGGAACTG
CGCTTCGATGTGGAGAACGGTCAGAAGGAGGAGGATGAATCCCGGATTCG
GAAGGCTTCTACTCTCAACAATCTTACTGCCTTTGGCCAGCTGCTGGAGG
AAACTGCTGACTCCCTGGACTTCGCATCGGCTGTGGCGCACTTGACCCAA
CTAGGACCATCGATGGTTGACTTTGAGATCAAATCTCTGCACCCGGAGGC
TGGAGGAACACTCCTTGCCATGCTGCAGTTCCTCAAACTCGTTAAGTTCA
TGTTTGGAACCAATCTGAACTTTGAGCTGGCTCAATCGTATCTAAGCGTC
TTCTTGCGATCCCACGGTCTCGGGTTGACGGAGTTCCCGGATTTGGTAAA
GGAGCTGCGCACTGTGTCCCAGGTGCAGCAGGAGGCTTGGCAGCGTGTGG
AGGAGAAGCTCATCTATGGAACTGGAGTTGTGGCCGCTCTCCGAAACTTT
GCGCACTAGTTTCCACCAGATTATGTTGTAGTTCATTTTGAAATTTTGTA
AATAAATTTACAAAACATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD47749.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:12:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG9799-RA 3025 CG9799-RA 95..3016 1..2922 14610 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:12:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 9212636..9213881 1249..4 6200 99.8 Minus
chr3R 27901430 chr3R 9210841..9212081 2921..1681 6100 99.4 Minus
chr3R 27901430 chr3R 9212141..9212572 1681..1250 2130 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:45:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:12:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13387443..13388691 1249..1 6245 100 Minus
3R 32079331 3R 13385647..13386888 2922..1681 6210 100 Minus
3R 32079331 3R 13386948..13387379 1681..1250 2160 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:06:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 13128274..13129522 1249..1 6245 100 Minus
3R 31820162 3R 13126478..13127719 2922..1681 6210 100 Minus
3R 31820162 3R 13127779..13128210 1681..1250 2160 100 Minus
Blast to na_te.dros performed on 2019-03-15 16:12:22 has no hits.

LD47749.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:13:37 Download gff for LD47749.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 9210841..9212080 1682..2921 99 <- Minus
chr3R 9212141..9212572 1250..1681 99 <- Minus
chr3R 9212636..9213884 1..1249 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:32:09 Download gff for LD47749.complete
Subject Subject Range Query Range Percent Splice Strand
CG9799-RA 1..2769 91..2859 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:18:55 Download gff for LD47749.complete
Subject Subject Range Query Range Percent Splice Strand
CG9799-RA 1..2769 91..2859 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:55:04 Download gff for LD47749.complete
Subject Subject Range Query Range Percent Splice Strand
CG9799-RA 1..2769 91..2859 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:33:30 Download gff for LD47749.complete
Subject Subject Range Query Range Percent Splice Strand
CG9799-RA 1..2769 91..2859 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:28:48 Download gff for LD47749.complete
Subject Subject Range Query Range Percent Splice Strand
CG9799-RA 1..2769 91..2859 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:47:15 Download gff for LD47749.complete
Subject Subject Range Query Range Percent Splice Strand
CG9799-RA 17..2937 1..2921 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:18:55 Download gff for LD47749.complete
Subject Subject Range Query Range Percent Splice Strand
CG9799-RA 24..2944 1..2921 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:55:04 Download gff for LD47749.complete
Subject Subject Range Query Range Percent Splice Strand
CG9799-RA 19..2939 1..2921 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:33:30 Download gff for LD47749.complete
Subject Subject Range Query Range Percent Splice Strand
CG9799-RA 17..2937 1..2921 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:28:48 Download gff for LD47749.complete
Subject Subject Range Query Range Percent Splice Strand
CG9799-RA 19..2939 1..2921 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:13:37 Download gff for LD47749.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13385648..13386887 1682..2921 100 <- Minus
3R 13386948..13387379 1250..1681 100 <- Minus
3R 13387443..13388691 1..1249 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:13:37 Download gff for LD47749.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13385648..13386887 1682..2921 100 <- Minus
3R 13386948..13387379 1250..1681 100 <- Minus
3R 13387443..13388691 1..1249 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:13:37 Download gff for LD47749.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13385648..13386887 1682..2921 100 <- Minus
3R 13386948..13387379 1250..1681 100 <- Minus
3R 13387443..13388691 1..1249 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:55:04 Download gff for LD47749.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9211370..9212609 1682..2921 100 <- Minus
arm_3R 9212670..9213101 1250..1681 100 <- Minus
arm_3R 9213165..9214413 1..1249 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:48:26 Download gff for LD47749.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13126479..13127718 1682..2921 100 <- Minus
3R 13127779..13128210 1250..1681 100 <- Minus
3R 13128274..13129522 1..1249 100   Minus

LD47749.pep Sequence

Translation from 90 to 2858

> LD47749.pep
MTHLRSEDKPQSEERKSVFKESSCIFRRNRALGYVSNQVPAVTRYVQRRR
DTLLITCIGRSFQVYTANHFRLLHVSGLHPDEITALATDRLHTYTASNKC
IYAWRAGKHIRHVYRGHQKDVHLLLPFGSSLIAIDRQNVLKVWNISTEDV
YLEVPFRSEEFQITAVTHPPTYINKIVLGSQQGQLKILNIKKNSVVCTLS
HHDSRITCIEPSPALDVVAVGHGDGTIILLNLKFDEVLMSFQQDWGQVTN
LSFRTDGPPILVSACSNGYMAFWNLEERKLAGQLQAHEESVTTAICLPSE
PVVFTTSPDNSMRMFVFDMPDGGARQLRIREGHTKPPFCIRYHGSSGVSI
LSSGEDSTMRVFSTISESLNKSMGRATYNPKATKKKNRFEHDKFGMPPIL
EFTSDTAREKEWDNIAAIHAGVIQTTTWSFGKNRMGEHRLVPKQFQNSNR
TNFQNETTCIVLTHCGNFVIIGYSSGDIERFNIQSGLHRATYGSPAHKMA
VRGLASDNLNQTVISGCSEGLLKFWSFKGKVDKPLATLRLADGIALIRQH
RESSMLAIGLETFKIFVVDMHTRVIVRKFVGHTAKLNDLTFSPDSRWLIT
AAMDSTIKVWDIPSSYMVDHFRVEAPCVSLSMSPNGDFLATAHVGLLGIY
LWANKTLFNQISLRSIDPLEPAPYVGLPTNVCDAMELEDGMKELEIDEED
ESKLGELVDTKYETPTQLSEELITLSGLAASRWQNLLDLELIKQRNKPKA
PPKAPKQAPFFLPTVSGLELRFDVENGQKEEDESRIRKASTLNNLTAFGQ
LLEETADSLDFASAVAHLTQLGPSMVDFEIKSLHPEAGGTLLAMLQFLKL
VKFMFGTNLNFELAQSYLSVFLRSHGLGLTEFPDLVKELRTVSQVQQEAW
QRVEEKLIYGTGVVAALRNFAH*

LD47749.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:20:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17386-PA 918 GF17386-PA 1..918 1..922 4294 86.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:20:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17057-PA 921 GG17057-PA 1..921 1..922 4819 96.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:20:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18547-PA 930 GH18547-PA 1..929 1..921 4132 81.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:25:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG9799-PA 922 CG9799-PA 1..922 1..922 4791 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:20:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23246-PA 928 GI23246-PA 1..927 1..921 3870 76.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:20:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23066-PA 916 GL23066-PA 2..916 6..922 4289 86.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:20:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22044-PA 916 GA22044-PA 2..916 6..922 4282 86.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:20:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25942-PA 922 GM25942-PA 1..922 1..922 4852 97.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:20:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20503-PA 922 GD20503-PA 1..922 1..922 4859 97.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:20:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10743-PA 927 GJ10743-PA 1..927 1..922 4132 81.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:20:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13349-PA 922 GK13349-PA 1..921 1..921 4059 80.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:20:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24446-PA 921 GE24446-PA 1..921 1..922 4825 96.4 Plus

LD47749.hyp Sequence

Translation from 90 to 2858

> LD47749.hyp
MTHLRSEDKPQSEERKSVFKESSCIFRRNRALGYVSNQVPAVTRYVQRRR
DTLLITCIGRSFQVYTANHFRLLHVSGLHPDEITALATDRLHTYTASNKC
IYAWRAGKHIRHVYRGHQKDVHLLLPFGSSLIAIDRQNVLKVWNISTEDV
YLEVPFRSEEFQITAVTHPPTYINKIVLGSQQGQLKILNIKKNSVVCTLS
HHDSRITCIEPSPALDVVAVGHGDGTIILLNLKFDEVLMSFQQDWGQVTN
LSFRTDGPPILVSACSNGYMAFWNLEERKLAGQLQAHEESVTTAICLPSE
PVVFTTSPDNSMRMFVFDMPDGGARQLRIREGHTKPPFCIRYHGSSGVSI
LSSGEDSTMRVFSTISESLNKSMGRATYNPKATKKKNRFEHDKFGMPPIL
EFTSDTAREKEWDNIAAIHAGVIQTTTWSFGKNRMGEHRLVPKQFQNSNR
TNFQNETTCIVLTHCGNFVIIGYSSGDIERFNIQSGLHRATYGSPAHKMA
VRGLASDNLNQTVISGCSEGLLKFWSFKGKVDKPLATLRLADGIALIRQH
RESSMLAIGLETFKIFVVDMHTRVIVRKFVGHTAKLNDLTFSPDSRWLIT
AAMDSTIKVWDIPSSYMVDHFRVEAPCVSLSMSPNGDFLATAHVGLLGIY
LWANKTLFNQISLRSIDPLEPAPYVGLPTNVCDAMELEDGMKELEIDEED
ESKLGELVDTKYETPTQLSEELITLSGLAASRWQNLLDLELIKQRNKPKA
PPKAPKQAPFFLPTVSGLELRFDVENGQKEEDESRIRKASTLNNLTAFGQ
LLEETADSLDFASAVAHLTQLGPSMVDFEIKSLHPEAGGTLLAMLQFLKL
VKFMFGTNLNFELAQSYLSVFLRSHGLGLTEFPDLVKELRTVSQVQQEAW
QRVEEKLIYGTGVVAALRNFAH*

LD47749.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:31:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG9799-PA 922 CG9799-PA 1..922 1..922 4791 100 Plus