Clone LD47780 Report

Search the DGRC for LD47780

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:477
Well:80
Vector:pOT2
Associated Gene/Transcriptgw-RA
Protein status:LD47780.pep: gold
Preliminary Size:5156
Sequenced Size:5012

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11484 2001-01-01 Release 2 assignment
CG9905 2001-01-01 Release 2 assignment
CG31992 2002-01-03 Blastp of sequenced clone
CG31992 2003-01-01 Sim4 clustering to Release 3
gw 2008-04-29 Release 5.5 accounting
gw 2008-08-15 Release 5.9 accounting
gw 2008-12-18 5.12 accounting

Clone Sequence Records

LD47780.complete Sequence

5012 bp (5012 high quality bases) assembled on 2002-01-03

GenBank Submission: AY075429

> LD47780.complete
CGTCCCCATCGTCGAACGTGCGCAGAAATTTATATTCAATTACATCGAAT
TATAATTATTGTTGAGTCTAATCAGTTTTCGCATTCAAGATTGTTATTAA
TCCCAGTTTATTTTGTGAAATATGAAAAACTATAATTGATTGTCGAATGT
GTGTATGTTTTACAACACATACACACTTTGTGAACTCGTCAAAGTGGCTT
GACATGCATACACACAAAAATGCACATATATTTACATATATAGAGAAAAT
CAACTTCTCGTTCAGTAAAGGCAAAAATTGTTGCAAATATTCGGTGAACT
ATTAGCGTATACACAAGTGTTCAATTTTACTATAAACGCATATTCTGGCA
ATAGATATTAATTTCTAATTTCTGTTTGAACACGGAAAGAACAAGGATTC
AGATTAAGTCATTCCTTTTCGATTAAATTAAATAACTTTTAAAAATTGCC
ATAAATGCTTATGATAATGAAGTTAAAGATCAAGTGGATGTTGGAATAGT
AAGGAATGCTACTTTTGAAGCTGACAATCAGTTAGAACACTTGAGCACTA
TGCGTGAAGCCCTTTTTTCCCAAGATGGCTGGGGCTGTCAGCATGTTAAC
CAGGATACTAATTGGGAAGTTCCCAGTTCGCCAGAACCAGCCAATAAGGA
TGCACCCGGTCCACCAATGTGGAAGCCAAGCATTAACAATGGTACTGATC
TTTGGGAGTCCAATTTGAGAAACGGAGGTCAGCCGGCCGCACAGCAAGTT
CCAAAGCCGTCGTGGGGTCATACACCATCCTCTAACTTAGGTGGAACATG
GGGTGAGGACGACGATGGCGCCGATAGTAGTAGTGTGTGGACTGGAGGAG
CTGTTAGCAACGCGGGATCCGGAGCTGCAGTGGGAGTAAACCAAGCCGGA
GTTAATGTCGGTCCAGGCGGTGTTGTTTCGTCTGGCGGACCTCAGTGGGG
ACAAGGTGTCGTTGGCGTCGGACTTGGATCAACTGGAGGTAACGGGTCAA
GCAATATAACTGGATCGTCTGGAGTCGCAACAGGTAGTAGCGGAAACTCC
AGCAACGCTGGTAACGGTTGGGGAGACCCTCGTGAAATACGCCCTTTGGG
AGTTGGTGGCTCCATGGATATTCGAAATGTTGAACATCGCGGCGGTAACG
GTTCTGGAGCAACTTCGAGCGATCCACGAGACATTCGCATGATCGATCCG
CGTGACCCTATTCGAGGAGATCCCCGTGGAATATCTGGTCGTCTTAATGG
GACCTCTGAAATGTGGGGTCATCATCCACAAATGTCCCATAACCAGTTGC
AAGGTATCAACAAAATGGTTGGTCAAAGTGTAGCAACTGCCAGCACCAGT
GTCGGAACATCTGGCTCGGGCATCGGTCCTGGAGGTCCCGGTCCTAGTAC
AGTATCAGGCAATATCCCAACACAGTGGGGGCCTGCTCAACCGGTAAGCG
TTGGTGTAAGTGGTCCCAAAGACATGTCAAAACAGATAAGTGGATGGGAG
GAACCATCACCACCGCCTCAGCGTCGCAGTATTCCTAACTACGATGATGG
TACATCGTTGTGGGGTCAGCAAACTCGTGTTCCCGCTGCAAGCGGTCACT
GGAAAGACATGACTGATTCGATAGGTCGTAGTAGTCATCTCATGCGTGGC
CAAAGCCAAACGGGAGGTATAGGAATAGCCGGCGTTGGAAATAGCAATGT
TCCAGTGGGAGCCAATCCAAGTAATCCTATAAGCAGTGTAGTTGGACCTC
AAGCCCGGATTCCATCTGTGGGCGGCGTACAACACAAACCAGACGGCGGC
GCTATGTGGGTGCATTCCGGCAATGTAGGTGGCAGAAATAATGTTGCTGC
TGTTACTACTTGGGGAGATGACACTCATAGCGTTAATGTCGGCGCTCCCA
GCAGTGGCAGTGTATCCAGCAACAATTGGGTTGATGACAAGTCCAACTCA
ACCTTGGCACAAAACTCTTGGAGCGACCCGGCCCCTGTTGGAGTTAGTTG
GGGCAATAAGCAAAGCAAACCGCCAAGCAATAGTGCTTCATCAGGTTGGA
GCACTGCTGCGGGCGTGGTGGATGGGGTTGATCTAGGATCTGAGTGGAAC
ACGCACGGGGGGATTATTGGAAAATCTCAGCAACAACAAAAACTAGCGGG
ACTTAACGTGGGAATGGTGAACGTAATTAACGCGGAGATCATTAAGCAAA
GCAAGCAATACAGGATCCTTGTCGAGAACGGCTTTAAAAAGGAAGATGTA
GAGCGGGCATTAGTGATTGCTAATATGAACATCGAAGAGGCAGCCGATAT
GCTCCGTGCCAACTCATCCCTATCAATGGATGGTTGGCGTCGACATGATG
AGTCCCTTGGATCTTATGCCGACCACAATAGTTCAACAAGCAGCGGTGGA
TTTGCTGGTCGTTACCCGGTCAACAGTGGACAACCTTCAATGTCCTTTCC
TCATAATAACCTTATGAATAACATGGGAGGTACCGCTGTTACTGGAGGTA
ACAACAATACAAACATGACAGCTTTACAGGTGCAAAAGTATTTAAATCAA
GGGCAACATGGTGTCGCTGTTGGACCGCAAGCCGTTGGTAATTCTTCAGC
AGTATCTGTCGGATTTGGTCAGAACACGTCTAACGCAGCAGTGGCAGGAG
CAGCCTCTGTAAATATAGCAGCAAATACAAACAACCAACCGTCTGGTCAG
CAAATTCGCATGCTAGGCCAGCAAATTCAGTTGGCCATTCATAGTGGTTT
CATATCTAGTCAGATATTGACTCAACCGCTAACTCAAACAACCCTTAACC
TTTTAAACCAACTTCTTAGCAATATTAAGCATCTCCAGGCTGCGCAGCAA
TCCCTTACCCGCGGGGGAAATGTCAATCCAATGGCAGTGAATGTGGCTAT
ATCTAAATACAAGCAGCAAATCCAGAATTTACAGAACCAGATAAATGCAC
AACAGGCTGTGTATGTAAAACAGCAAAATATGCAACCAACTTCACAACAA
CAACAGCCCCAACAACAGCAACTTCCTTCTGTTCATCTAAGTAACTCAGG
CAACGACTATTTAAGAGGTCACGATGCAATAAATAATTTGCAAAGCAACT
TTTCTGAGCTCAATATTAATAAGCCAAGTGGATATCAAGGAGCGTCCAAT
CAACAATCCCGATTAAATCAGTGGAAGCTTCCAGTATTAGATAAGGAGAT
CAACTCTGACAGTACGGAATTTTCTCGTGCCCCAGGTGCAACGAAACAAA
ATTTGACGGCCAACACAAGCAACATAAACTCTTTGGGTCTTCAAAACGAT
AGTACATGGTCAACTGGACGCAGTATTGGTGACGGTTGGCCTGATCCCTC
ATCTGATAACGAGAATAAAGACTGGTCTGTTGCTCAGCCAACTTCAGCAG
CAACTGCTTACACTGATCTGGTCCAAGAGTTTGAGCCAGGCAAGCCATGG
AAGGGTTCACAGATCAAAAGCATAGAAGATGATCCCAGCATTACACCAGG
AAGCGTTGCTAGATCTCCATTGTCTATTAATTCGACGCCAAAAGATGCTG
ACATATTTGCCAATACCGGTAAAAATTCACCGACTGATTTACCGCCACTA
AGTTTATCGTCGTCTACATGGAGTTTTAATCCAAACCAAAATTATCCGAG
TCACAGTTGGTCTGACAATAGTCAACAATGTACCGCCACTTCGGAGCTTT
GGACAAGCCCGCTAAATAAATCATCGTCTCGAGGTCCCCCGCCAGGATTG
ACTGCCAATTCAAATAAATCTGCAAATAGTAATGCGTCAACGCCAACAAC
TATTACCGGAGGTGCGAATGGATGGTTACAGCCTCGAAGTGGCGGTGTTC
AAACCACAAACACTAATTGGACAGGTGGTAACACCACTTGGGGCTCCAGT
TGGTTGCTTTTGAAAAATCTAACAGCACAGATTGATGGTCCTACTTTGCG
TACACTGTGTATGCAGCATGGGCCCCTTGTCAGCTTTCACCCGTATTTGA
ACCAAGGAATTGCCTTATGTAAATATACTACTCGTGAGGAGGCGAACAAG
GCGCAAATGGCGTTAAACAACTGTGTCCTCGCCAACACCACAATATTTGC
TGAATCTCCCAGCGAGAACGAGGTGCAAAGCATTATGCAGCACTTACCAC
AAACTCCTTCCTCTACAAGCTCTAGTGGAACTAGTGGTGGCAACGTCGGA
GGCGTCGGCACTTCAGCCAATAATGCAAACAGTGGTTCTGCAGCTTGTCT
GTCCGGAAACAATAGCGGCAACGGAAACGGCAGCGCGAGCGGCGCCGGCA
GCGGCAACAATGGCAACAGTAGCTGCAACAACAGTGCCGCCGGGGGGGGC
AGCAGCAGCAACAACACGATTACCACTGTAGCAAATTCGAATCTTGTTGG
TTCTAGTGGCTCTGTCTCAAATTCCTCTGGCGTTACTGCTAACTCTAGTA
CTGTTTCTGTAGTTAGTTGTACAGCGAGTGGGAATTCCATAAATGGGGCA
GGTACTGCAAACAGTTCTGGTTCAAAGAGTAGTGCAAACAATTTAGCTAG
CGGCCAGTCTAGCGCTTCTAACTTAACTAATAGCACCAATTCAACATGGC
GACAAACTAGCCAAAACCAAGCTCTTCAAAGTCAAAGCAGGCCATCAGGC
AGAGAAGCTGACTTTGATTATATATCTCTCGTTTATTCCATTGTTGATGA
TTAAAAGATCAATTACCAGTTCCATTGGTCATTGGCCATTGACTATCGCA
TTCTGTGACTCAAGACACACACACCCAAAAGCTTCAAATTATATGATACT
AAGTATGTATGAAAAGCAAGACCATGTTGTGAGGAATACAAAAGTGGATC
GACTGATAGACGAATGGACTTAGAATTTTGTATGCCTGTAGATTTATTTT
TCTTCATCGTTCATAGATATAACTTCGATATGTAAGTTTAAATTTAACCA
ATATAAAAAAACATCCAACATACATATGTATGTATATGTCAAAAAAAAAA
AAAAAAAAAAAA

LD47780.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:56:44
Subject Length Description Subject Range Query Range Score Percent Strand
gw-RA 5345 gw-RA 52..5063 1..5012 25060 100 Plus
gw.e 5592 gw.e 52..5063 1..5012 25060 100 Plus
gw.g 5712 gw.g 549..5183 378..5012 23175 100 Plus
gw.g 5712 gw.g 52..346 1..295 1475 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:30:39
Subject Length Description Subject Range Query Range Score Percent Strand
chr4 1351717 chr4 676770..678239 2454..985 7350 100 Minus
chr4 1351717 chr4 670533..671587 4982..3928 5275 100 Minus
chr4 1351717 chr4 678455..679063 986..378 3045 100 Minus
chr4 1351717 chr4 680114..680491 378..1 1890 100 Minus
chr4 1351717 chr4 675615..675989 2829..2455 1875 100 Minus
chr4 1351717 chr4 675059..675354 3123..2828 1465 99.7 Minus
chr4 1351717 chr4 672859..673140 3930..3649 1410 100 Minus
chr4 1351717 chr4 673200..673399 3650..3451 1000 100 Minus
chr4 1351717 chr4 674424..674604 3302..3122 905 100 Minus
chr4 1351717 chr4 673454..673609 3454..3299 780 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:45:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:30:35
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 656216..657685 2454..985 7350 100 Minus
4 1348131 4 649949..651033 5012..3928 5425 100 Minus
4 1348131 4 657901..658509 986..378 3045 100 Minus
4 1348131 4 659560..659937 378..1 1890 100 Minus
4 1348131 4 655061..655435 2829..2455 1875 100 Minus
4 1348131 4 654505..654800 3123..2828 1480 100 Minus
4 1348131 4 652305..652586 3930..3649 1410 100 Minus
4 1348131 4 652646..652845 3650..3451 1000 100 Minus
4 1348131 4 653870..654050 3302..3122 905 100 Minus
4 1348131 4 652900..653055 3454..3299 780 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:15:49
Subject Length Description Subject Range Query Range Score Percent Strand
4 1331231 4 656216..657685 2454..985 7350 100 Minus
4 1331231 4 649949..651033 5012..3928 5425 100 Minus
4 1331231 4 657901..658509 986..378 3045 100 Minus
4 1331231 4 659560..659937 378..1 1890 100 Minus
4 1331231 4 655061..655435 2829..2455 1875 100 Minus
4 1331231 4 654505..654800 3123..2828 1480 100 Minus
4 1331231 4 652305..652586 3930..3649 1410 100 Minus
4 1331231 4 652646..652845 3650..3451 1000 100 Minus
4 1331231 4 653870..654050 3302..3122 905 100 Minus
4 1331231 4 652900..653055 3454..3299 780 100 Minus
Blast to na_te.dros performed 2019-03-16 11:30:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6788..6916 4254..4384 236 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6705..6841 4246..4384 213 62.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2320..2425 4258..4366 205 67 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6846 4254..4366 196 63.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6809..6921 4254..4366 187 62.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6753..6864 4258..4366 184 64.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2305..2416 4273..4383 170 62.5 Plus
roo 9092 roo DM_ROO 9092bp 1062..1152 4276..4366 167 64.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6813 4276..4366 165 67 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2412..2528 4254..4376 161 61 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2772..2860 4281..4366 158 67.4 Plus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 641..727 4362..4276 156 64.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6808 4299..4384 153 68.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2410 4260..4366 150 61.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2262..2380 4253..4375 148 64.1 Plus
roo 9092 roo DM_ROO 9092bp 1047..1140 4276..4366 148 63.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2370..2496 4254..4388 144 60.3 Plus
roo 9092 roo DM_ROO 9092bp 1061..1147 4299..4384 144 64.4 Plus
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 667..868 56..264 135 57.7 Plus
Stalker2 7672 Stalker2 STALKER2 7672bp 1440..1585 506..358 134 58.3 Minus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 121..223 4286..4387 134 60.2 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9151..9253 4286..4387 134 60.2 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 65..168 4262..4366 128 63.6 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9095..9198 4262..4366 128 63.6 Plus
springer 7546 springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. 6099..6200 377..490 126 64.9 Plus

LD47780.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:31:41 Download gff for LD47780.complete
Subject Subject Range Query Range Percent Splice Strand
chr4 670528..671584 3931..4990 99 <- Minus
chr4 672859..673138 3651..3930 100 <- Minus
chr4 673200..673396 3454..3650 100 <- Minus
chr4 673455..673605 3303..3453 100 <- Minus
chr4 674424..674602 3124..3302 100 <- Minus
chr4 675059..675352 2830..3123 99 <- Minus
chr4 675615..675989 2455..2829 100 <- Minus
chr4 676770..678238 986..2454 100 <- Minus
chr4 678456..679062 379..985 100 <- Minus
chr4 680114..680491 1..378 100   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:55:03 Download gff for LD47780.complete
Subject Subject Range Query Range Percent Splice Strand
gw-RH 1..4155 550..4704 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:54:33 Download gff for LD47780.complete
Subject Subject Range Query Range Percent Splice Strand
gw-RB 1..4155 550..4704 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:37:34 Download gff for LD47780.complete
Subject Subject Range Query Range Percent Splice Strand
gw-RH 1..4155 550..4704 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:19:10 Download gff for LD47780.complete
Subject Subject Range Query Range Percent Splice Strand
gw-RB 1..4155 550..4704 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:08:14 Download gff for LD47780.complete
Subject Subject Range Query Range Percent Splice Strand
gw-RA 1..4990 1..4990 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:55:03 Download gff for LD47780.complete
Subject Subject Range Query Range Percent Splice Strand
gw-RA 1..4990 1..4990 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:54:33 Download gff for LD47780.complete
Subject Subject Range Query Range Percent Splice Strand
gw-RA 47..5036 1..4990 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:37:35 Download gff for LD47780.complete
Subject Subject Range Query Range Percent Splice Strand
gw-RA 1..4990 1..4990 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:19:10 Download gff for LD47780.complete
Subject Subject Range Query Range Percent Splice Strand
gw-RA 47..5036 1..4990 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:31:41 Download gff for LD47780.complete
Subject Subject Range Query Range Percent Splice Strand
4 654505..654798 2830..3123 100 <- Minus
4 652305..652584 3651..3930 100 <- Minus
4 652646..652842 3454..3650 100 <- Minus
4 652901..653051 3303..3453 100 <- Minus
4 653870..654048 3124..3302 100 <- Minus
4 649971..651030 3931..4990 100 <- Minus
4 655061..655435 2455..2829 100 <- Minus
4 656216..657684 986..2454 100 <- Minus
4 657902..658508 379..985 100 <- Minus
4 659560..659937 1..378 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:31:41 Download gff for LD47780.complete
Subject Subject Range Query Range Percent Splice Strand
4 654505..654798 2830..3123 100 <- Minus
4 652305..652584 3651..3930 100 <- Minus
4 652646..652842 3454..3650 100 <- Minus
4 652901..653051 3303..3453 100 <- Minus
4 653870..654048 3124..3302 100 <- Minus
4 649971..651030 3931..4990 100 <- Minus
4 655061..655435 2455..2829 100 <- Minus
4 656216..657684 986..2454 100 <- Minus
4 657902..658508 379..985 100 <- Minus
4 659560..659937 1..378 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:31:41 Download gff for LD47780.complete
Subject Subject Range Query Range Percent Splice Strand
4 654505..654798 2830..3123 100 <- Minus
4 652305..652584 3651..3930 100 <- Minus
4 652646..652842 3454..3650 100 <- Minus
4 652901..653051 3303..3453 100 <- Minus
4 653870..654048 3124..3302 100 <- Minus
4 649971..651030 3931..4990 100 <- Minus
4 655061..655435 2455..2829 100 <- Minus
4 656216..657684 986..2454 100 <- Minus
4 657902..658508 379..985 100 <- Minus
4 659560..659937 1..378 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:54:33 Download gff for LD47780.complete
Subject Subject Range Query Range Percent Splice Strand
arm_4 670597..671656 3931..4990 100 <- Minus
arm_4 672931..673210 3651..3930 100 <- Minus
arm_4 673272..673468 3454..3650 100 <- Minus
arm_4 673527..673677 3303..3453 100 <- Minus
arm_4 674496..674674 3124..3302 100 <- Minus
arm_4 675131..675424 2830..3123 100 <- Minus
arm_4 675687..676061 2455..2829 100 <- Minus
arm_4 676842..678310 986..2454 100 <- Minus
arm_4 678528..679134 379..985 100 <- Minus
arm_4 680186..680563 1..378 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:20:27 Download gff for LD47780.complete
Subject Subject Range Query Range Percent Splice Strand
4 653870..654048 3124..3302 100 <- Minus
4 654505..654798 2830..3123 100 <- Minus
4 649971..651030 3931..4990 100 <- Minus
4 652305..652584 3651..3930 100 <- Minus
4 652646..652842 3454..3650 100 <- Minus
4 652901..653051 3303..3453 100 <- Minus
4 655061..655435 2455..2829 100 <- Minus
4 656216..657684 986..2454 100 <- Minus
4 657902..658508 379..985 100 <- Minus
4 659560..659937 1..378 100   Minus

LD47780.pep Sequence

Translation from 549 to 4703

> LD47780.pep
MREALFSQDGWGCQHVNQDTNWEVPSSPEPANKDAPGPPMWKPSINNGTD
LWESNLRNGGQPAAQQVPKPSWGHTPSSNLGGTWGEDDDGADSSSVWTGG
AVSNAGSGAAVGVNQAGVNVGPGGVVSSGGPQWGQGVVGVGLGSTGGNGS
SNITGSSGVATGSSGNSSNAGNGWGDPREIRPLGVGGSMDIRNVEHRGGN
GSGATSSDPRDIRMIDPRDPIRGDPRGISGRLNGTSEMWGHHPQMSHNQL
QGINKMVGQSVATASTSVGTSGSGIGPGGPGPSTVSGNIPTQWGPAQPVS
VGVSGPKDMSKQISGWEEPSPPPQRRSIPNYDDGTSLWGQQTRVPAASGH
WKDMTDSIGRSSHLMRGQSQTGGIGIAGVGNSNVPVGANPSNPISSVVGP
QARIPSVGGVQHKPDGGAMWVHSGNVGGRNNVAAVTTWGDDTHSVNVGAP
SSGSVSSNNWVDDKSNSTLAQNSWSDPAPVGVSWGNKQSKPPSNSASSGW
STAAGVVDGVDLGSEWNTHGGIIGKSQQQQKLAGLNVGMVNVINAEIIKQ
SKQYRILVENGFKKEDVERALVIANMNIEEAADMLRANSSLSMDGWRRHD
ESLGSYADHNSSTSSGGFAGRYPVNSGQPSMSFPHNNLMNNMGGTAVTGG
NNNTNMTALQVQKYLNQGQHGVAVGPQAVGNSSAVSVGFGQNTSNAAVAG
AASVNIAANTNNQPSGQQIRMLGQQIQLAIHSGFISSQILTQPLTQTTLN
LLNQLLSNIKHLQAAQQSLTRGGNVNPMAVNVAISKYKQQIQNLQNQINA
QQAVYVKQQNMQPTSQQQQPQQQQLPSVHLSNSGNDYLRGHDAINNLQSN
FSELNINKPSGYQGASNQQSRLNQWKLPVLDKEINSDSTEFSRAPGATKQ
NLTANTSNINSLGLQNDSTWSTGRSIGDGWPDPSSDNENKDWSVAQPTSA
ATAYTDLVQEFEPGKPWKGSQIKSIEDDPSITPGSVARSPLSINSTPKDA
DIFANTGKNSPTDLPPLSLSSSTWSFNPNQNYPSHSWSDNSQQCTATSEL
WTSPLNKSSSRGPPPGLTANSNKSANSNASTPTTITGGANGWLQPRSGGV
QTTNTNWTGGNTTWGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL
NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSENEVQSIMQHLP
QTPSSTSSSGTSGGNVGGVGTSANNANSGSAACLSGNNSGNGNGSASGAG
SGNNGNSSCNNSAAGGGSSSNNTITTVANSNLVGSSGSVSNSSGVTANSS
TVSVVSCTASGNSINGAGTANSSGSKSSANNLASGQSSASNLTNSTNSTW
RQTSQNQALQSQSRPSGREADFDYISLVYSIVDD*

LD47780.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:16:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19039-PA 1375 GF19039-PA 1..1188 1..1203 4442 78.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:16:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16439-PA 1392 GG16439-PA 1..1392 1..1384 5693 91 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:16:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23931-PA 1432 GH23931-PA 1..1231 1..1203 3729 68.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:38
Subject Length Description Subject Range Query Range Score Percent Strand
gw-PA 1384 CG31992-PA 1..1384 1..1384 7295 100 Plus
gw-PF 1384 CG31992-PF 1..1384 1..1384 7295 100 Plus
gw-PB 1384 CG31992-PB 1..1384 1..1384 7295 100 Plus
gw-PE 1384 CG31992-PE 1..1384 1..1384 7295 100 Plus
gw-PJ 1382 CG31992-PJ 1..1382 1..1384 7270 99.9 Plus
gw-PI 1381 CG31992-PI 1..1381 1..1384 7266 99.8 Plus
Mur89F-PC 2158 CG4090-PC 250..1044 585..1384 260 21.6 Plus
Mur89F-PB 2159 CG4090-PB 250..1044 585..1384 260 21.6 Plus
Muc68Ca-PA 3135 CG18331-PA 793..2058 75..1371 221 19.2 Plus
Mur89F-PC 2158 CG4090-PC 270..1196 339..1331 213 20.4 Plus
Mur89F-PB 2159 CG4090-PB 270..1196 339..1331 213 20.4 Plus
Alh-PL 1332 CG1070-PL 162..875 601..1340 197 21.6 Plus
Alh-PK 1385 CG1070-PK 215..928 601..1340 197 21.6 Plus
Alh-PD 1323 CG1070-PD 162..866 601..1340 190 21.4 Plus
Alh-PA 1376 CG1070-PA 215..919 601..1340 190 21.4 Plus
Alh-PP 1717 CG1070-PP 215..919 601..1340 190 21.4 Plus
Muc68D-PB 1514 CG6004-PB 351..1103 601..1370 184 19.9 Plus
Alh-PL 1332 CG1070-PL 202..676 932..1383 183 24.8 Plus
Alh-PK 1385 CG1070-PK 255..729 932..1383 183 24.8 Plus
sbb-PE 929 CG5580-PE 61..570 885..1367 178 23.9 Plus
sbb-PC 929 CG5580-PC 61..570 885..1367 178 23.9 Plus
sbb-PF 939 CG5580-PF 71..580 885..1367 178 23.9 Plus
sbb-PH 2302 CG5580-PH 61..570 885..1367 178 23.9 Plus
sbb-PD 2302 CG5580-PD 61..570 885..1367 178 23.9 Plus
sbb-PG 2312 CG5580-PG 71..580 885..1367 178 23.9 Plus
sbb-PJ 2330 CG5580-PJ 71..580 885..1367 178 23.9 Plus
Muc68D-PB 1514 CG6004-PB 776..1282 887..1353 177 23.2 Plus
Mur29B-PA 555 CG31901-PA 112..473 976..1348 176 22 Plus
Alh-PD 1323 CG1070-PD 265..868 785..1370 165 22.4 Plus
Alh-PA 1376 CG1070-PA 318..921 785..1370 165 22.4 Plus
Alh-PP 1717 CG1070-PP 318..921 785..1370 165 22.4 Plus
Mur29B-PA 555 CG31901-PA 67..431 988..1367 165 21.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:16:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14096-PA 1202 GI14096-PA 1..1178 1..1138 3454 66.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:16:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18179-PA 1226 GL18179-PA 13..1226 178..1384 3755 72.8 Plus
Dper\GL18178-PA 176 GL18178-PA 1..132 1..133 625 89.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:16:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16600-PA 1396 GA16600-PA 1..1396 1..1384 4425 74.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:16:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26772-PA 1385 GM26772-PA 1..1385 1..1384 6904 97.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:16:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24374-PA 1164 GD24374-PA 1..1154 1..1214 5722 91.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:16:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14351-PA 1377 GJ14351-PA 1..1236 1..1233 3875 69.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:17:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13697-PA 1437 GK13697-PA 1..1260 1..1208 3699 68.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:17:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14506-PA 1386 GE14506-PA 1..1386 1..1384 5531 91.5 Plus

LD47780.hyp Sequence

Translation from 549 to 4703

> LD47780.hyp
MREALFSQDGWGCQHVNQDTNWEVPSSPEPANKDAPGPPMWKPSINNGTD
LWESNLRNGGQPAAQQVPKPSWGHTPSSNLGGTWGEDDDGADSSSVWTGG
AVSNAGSGAAVGVNQAGVNVGPGGVVSSGGPQWGQGVVGVGLGSTGGNGS
SNITGSSGVATGSSGNSSNAGNGWGDPREIRPLGVGGSMDIRNVEHRGGN
GSGATSSDPRDIRMIDPRDPIRGDPRGISGRLNGTSEMWGHHPQMSHNQL
QGINKMVGQSVATASTSVGTSGSGIGPGGPGPSTVSGNIPTQWGPAQPVS
VGVSGPKDMSKQISGWEEPSPPPQRRSIPNYDDGTSLWGQQTRVPAASGH
WKDMTDSIGRSSHLMRGQSQTGGIGIAGVGNSNVPVGANPSNPISSVVGP
QARIPSVGGVQHKPDGGAMWVHSGNVGGRNNVAAVTTWGDDTHSVNVGAP
SSGSVSSNNWVDDKSNSTLAQNSWSDPAPVGVSWGNKQSKPPSNSASSGW
STAAGVVDGVDLGSEWNTHGGIIGKSQQQQKLAGLNVGMVNVINAEIIKQ
SKQYRILVENGFKKEDVERALVIANMNIEEAADMLRANSSLSMDGWRRHD
ESLGSYADHNSSTSSGGFAGRYPVNSGQPSMSFPHNNLMNNMGGTAVTGG
NNNTNMTALQVQKYLNQGQHGVAVGPQAVGNSSAVSVGFGQNTSNAAVAG
AASVNIAANTNNQPSGQQIRMLGQQIQLAIHSGFISSQILTQPLTQTTLN
LLNQLLSNIKHLQAAQQSLTRGGNVNPMAVNVAISKYKQQIQNLQNQINA
QQAVYVKQQNMQPTSQQQQPQQQQLPSVHLSNSGNDYLRGHDAINNLQSN
FSELNINKPSGYQGASNQQSRLNQWKLPVLDKEINSDSTEFSRAPGATKQ
NLTANTSNINSLGLQNDSTWSTGRSIGDGWPDPSSDNENKDWSVAQPTSA
ATAYTDLVQEFEPGKPWKGSQIKSIEDDPSITPGSVARSPLSINSTPKDA
DIFANTGKNSPTDLPPLSLSSSTWSFNPNQNYPSHSWSDNSQQCTATSEL
WTSPLNKSSSRGPPPGLTANSNKSANSNASTPTTITGGANGWLQPRSGGV
QTTNTNWTGGNTTWGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL
NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSENEVQSIMQHLP
QTPSSTSSSGTSGGNVGGVGTSANNANSGSAACLSGNNSGNGNGSASGAG
SGNNGNSSCNNSAAGGGSSSNNTITTVANSNLVGSSGSVSNSSGVTANSS
TVSVVSCTASGNSINGAGTANSSGSKSSANNLASGQSSASNLTNSTNSTW
RQTSQNQALQSQSRPSGREADFDYISLVYSIVDD*

LD47780.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:26:21
Subject Length Description Subject Range Query Range Score Percent Strand
gw-PA 1384 CG31992-PA 1..1384 1..1384 7295 100 Plus
gw-PF 1384 CG31992-PF 1..1384 1..1384 7295 100 Plus
gw-PB 1384 CG31992-PB 1..1384 1..1384 7295 100 Plus
gw-PE 1384 CG31992-PE 1..1384 1..1384 7295 100 Plus
gw-PJ 1382 CG31992-PJ 1..1382 1..1384 7270 99.9 Plus