Clone LD47783 Report

Search the DGRC for LD47783

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:477
Well:83
Vector:pOT2
Associated Gene/TranscriptI-2-RA
Protein status:LD47783.pep: gold
Sequenced Size:1542

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10574 2003-01-01 Sim4 clustering to Release 3
CG10574 2004-04-27 Blastp of sequenced clone
I-2 2008-04-29 Release 5.5 accounting
I-2 2008-08-15 Release 5.9 accounting
I-2 2008-12-18 5.12 accounting

Clone Sequence Records

LD47783.complete Sequence

1542 bp (1542 high quality bases) assembled on 2004-04-27

GenBank Submission: BT014655

> LD47783.complete
ATTTTACCGGATTTGCCATTTGCTTTGCAATACAAATTAGAAGAGAATAT
CCACACAGTGACCATTAAAGCGTAAAGAGCCAAATCTAACGTTTTCCAAA
TTAAGATCAAAACCGCCCGTCTGGCGACATCGATGAGATCGTGGCCCTCG
CCCAAAACCCAGCTGGCTGCCAACTTGAAGATTGTGGCGTAAATTGCCCT
CCGGAAACGCAGTTGCAATTGCAGTTAACAGGCGAAAGTCACACAAGTAA
CACAGATAGCCAGGATGCAGAACAATCCCAGCCCACAGCTACCCTGCAAG
GGTATACTAAAGACTTCGCGTAGCTTCGACAAGTCGGGAGCCAGTTTTCG
CAAAAGTGCCAAGTTCGATGAGCTGAACGTGATGCAGACCTTCCATCCGG
CCGACAAGGACTACGGACACATGAAAATCGATGAGCCCAAAACGCCGTAC
AACTACACGGAGGGCTTCGACGAGAACAGGGACGAGCTGGACACGGAGTT
GCTAGTGGAGAAACTCCGCATAGCGGCTAACACACAGCCGTCGACAGAGA
GCATCGAGGACGATGGTTCCTCCGGTGATGACCAGCCCCTTAGCGAAGAG
GAGCGACAACGGCGGCGCGAATTCGAGCGACGCCGTAAGGCCCACTATCG
CGAGTTTGAGGCCGTCAAACTGGCACGAAAACTGATCCAGGAGGAGGACG
ACGACGATGACGACGAGGACAAGGGTGCGGATAGCCGGCCCTCGGGCTCG
TCACAGGGCGCTTCCAGCTCCGGACGTTTCGCGAGCAGTTCGACCAAACG
GTCGAGCTCTCAGGCTGACTCCACCACATCCCCGTCTACCAGCGCCGGCC
AGAACATGGACCTGGAGCCATCGAATAACTAGAAGCAATGTCAACCCATC
AATCAATCACTAATGTTTACCTAGCGGACAATGGACGATTCTGAGGGCAG
CTCATCCAAAACAATAAACAAACGAAATTATATCAAATTATCAAGTGCTG
TGCGAGTGCGGAGTGAGAAGTGGATGCTGATTAGCAGGGTGGCGAGGAGC
ACTCGTGATTAATTGAATTTACCCAACTAAACACAAAAAACAAACCGTCG
CCAAGGAGATGCGTCATCGAGTAGTGAACACAGCCGATAAGCCGAGGGGC
ACTTTATTGTTGCAAATTGAGTTTAGAGCACAAAGAATGTGCACCTGGTC
GGAGAATTTGATTGTACGACACAAAATATAATTAATCGTATGCGTCTCAG
CCGTAGCGTCCTGTATTGTTGCAAATGTAGTTAAACAAAAGTCTTTCAAA
TTGATATCGAGATGGAAAGCCAACCCGTTCGCAGCTCCGTTTGCATTTAA
TTTGATTGGATGCCCAGTGCCACAGAATGGATAACTTGTTGTAACTAGCG
TTGAAATTGATTTGGCCTTACTTTTAGTTATTTATTAATACGATACTATT
ATGATTACTATTAAGTTTTAGCCATCGAATGCGAGCCGAGCGTTTCAATA
AAGAGAGTCCAAAAACCCAATTGAAAAAAAAAAAAAAAAAAA

LD47783.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:01:25
Subject Length Description Subject Range Query Range Score Percent Strand
I-2-RA 1642 I-2-RA 114..1642 1..1529 7645 100 Plus
I-2-RB 1581 I-2-RB 298..1581 247..1530 6420 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:10:25
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 9826169..9827084 1523..608 4580 100 Minus
chr3L 24539361 chr3L 9828321..9828570 250..1 1220 99.2 Minus
chr3L 24539361 chr3L 9827616..9827785 512..343 835 99.4 Minus
chr3L 24539361 chr3L 9827852..9827953 344..243 495 99 Minus
chr3L 24539361 chr3L 9827141..9827235 607..513 475 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:45:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:10:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9834360..9835282 1530..608 4615 100 Minus
3L 28110227 3L 9836518..9836767 250..1 1250 100 Minus
3L 28110227 3L 9835813..9835982 512..343 850 100 Minus
3L 28110227 3L 9836049..9836150 344..243 495 99 Minus
3L 28110227 3L 9835339..9835433 607..513 475 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:49:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 9827460..9828382 1530..608 4615 100 Minus
3L 28103327 3L 9829618..9829867 250..1 1250 100 Minus
3L 28103327 3L 9828913..9829082 512..343 850 100 Minus
3L 28103327 3L 9829149..9829250 344..243 495 99 Minus
3L 28103327 3L 9828439..9828533 607..513 475 100 Minus
Blast to na_te.dros performed 2019-03-16 22:10:24
Subject Length Description Subject Range Query Range Score Percent Strand
G-element 4346 G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). 565..601 686..721 119 83.8 Plus
Quasimodo 7387 Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. 852..917 29..95 116 65.7 Plus

LD47783.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:11:04 Download gff for LD47783.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 9828325..9828570 1..246 99   Minus
chr3L 9827141..9827235 513..607 100 <- Minus
chr3L 9827616..9827783 345..512 99 <- Minus
chr3L 9827852..9827949 247..344 100 <- Minus
chr3L 9826169..9827084 608..1523 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:32:12 Download gff for LD47783.complete
Subject Subject Range Query Range Percent Splice Strand
I-2-RB 298..933 247..882 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:36:23 Download gff for LD47783.complete
Subject Subject Range Query Range Percent Splice Strand
I-2-RB 298..933 247..882 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:11:44 Download gff for LD47783.complete
Subject Subject Range Query Range Percent Splice Strand
I-2-RB 298..933 247..882 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:20:13 Download gff for LD47783.complete
Subject Subject Range Query Range Percent Splice Strand
I-2-RB 298..933 247..882 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:36:07 Download gff for LD47783.complete
Subject Subject Range Query Range Percent Splice Strand
I-2-RB 298..933 247..882 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:43:30 Download gff for LD47783.complete
Subject Subject Range Query Range Percent Splice Strand
I-2-RA 30..1552 1..1523 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:36:23 Download gff for LD47783.complete
Subject Subject Range Query Range Percent Splice Strand
I-2-RA 30..1552 1..1523 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:11:44 Download gff for LD47783.complete
Subject Subject Range Query Range Percent Splice Strand
I-2-RA 39..1561 1..1523 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:20:13 Download gff for LD47783.complete
Subject Subject Range Query Range Percent Splice Strand
I-2-RA 30..1552 1..1523 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:36:07 Download gff for LD47783.complete
Subject Subject Range Query Range Percent Splice Strand
I-2-RA 39..1561 1..1523 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:11:04 Download gff for LD47783.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9834367..9835282 608..1523 100 <- Minus
3L 9835339..9835433 513..607 100 <- Minus
3L 9835813..9835980 345..512 100 <- Minus
3L 9836049..9836146 247..344 100 <- Minus
3L 9836522..9836767 1..246 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:11:04 Download gff for LD47783.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9834367..9835282 608..1523 100 <- Minus
3L 9835339..9835433 513..607 100 <- Minus
3L 9835813..9835980 345..512 100 <- Minus
3L 9836049..9836146 247..344 100 <- Minus
3L 9836522..9836767 1..246 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:11:04 Download gff for LD47783.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9834367..9835282 608..1523 100 <- Minus
3L 9835339..9835433 513..607 100 <- Minus
3L 9835813..9835980 345..512 100 <- Minus
3L 9836049..9836146 247..344 100 <- Minus
3L 9836522..9836767 1..246 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:11:44 Download gff for LD47783.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9828913..9829080 345..512 100 <- Minus
arm_3L 9829149..9829246 247..344 100 <- Minus
arm_3L 9827467..9828382 608..1523 100 <- Minus
arm_3L 9828439..9828533 513..607 100 <- Minus
arm_3L 9829622..9829867 1..246 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:57:30 Download gff for LD47783.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9827467..9828382 608..1523 100 <- Minus
3L 9828439..9828533 513..607 100 <- Minus
3L 9828913..9829080 345..512 100 <- Minus
3L 9829149..9829246 247..344 100 <- Minus
3L 9829622..9829867 1..246 100   Minus

LD47783.pep Sequence

Translation from 264 to 881

> LD47783.pep
MQNNPSPQLPCKGILKTSRSFDKSGASFRKSAKFDELNVMQTFHPADKDY
GHMKIDEPKTPYNYTEGFDENRDELDTELLVEKLRIAANTQPSTESIEDD
GSSGDDQPLSEEERQRRREFERRRKAHYREFEAVKLARKLIQEEDDDDDD
EDKGADSRPSGSSQGASSSGRFASSSTKRSSSQADSTTSPSTSAGQNMDL
EPSNN*

LD47783.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:16:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25124-PA 210 GF25124-PA 1..210 1..205 760 84.8 Plus
Dana\GF15110-PA 288 GF15110-PA 8..141 11..144 343 51.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:16:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14003-PA 205 GG14003-PA 1..205 1..205 1046 97.1 Plus
Dere\GG21754-PA 293 GG21754-PA 6..136 11..144 324 51.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:16:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16012-PA 207 GH16012-PA 1..207 1..205 654 73.9 Plus
Dgri\GH10084-PA 240 GH10084-PA 1..138 1..146 256 50.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:24
Subject Length Description Subject Range Query Range Score Percent Strand
I-2-PA 205 CG10574-PA 1..205 1..205 1057 100 Plus
I-2-PB 310 CG10574-PB 106..310 1..205 1057 100 Plus
CG6380-PB 293 CG6380-PB 7..136 12..144 315 51.5 Plus
CG6380-PA 293 CG6380-PA 7..136 12..144 315 51.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:16:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12278-PA 202 GI12278-PA 1..202 1..205 645 73.7 Plus
Dmoj\GI14265-PA 249 GI14265-PA 7..141 11..147 303 48.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:16:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16322-PA 199 GL16322-PA 1..199 1..205 614 79.8 Plus
Dper\GL19746-PA 262 GL19746-PA 6..147 11..150 291 51 Plus
Dper\GL22570-PA 281 GL22570-PA 7..155 12..160 290 46.7 Plus
Dper\GL22569-PA 281 GL22569-PA 7..155 12..160 290 46.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:16:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10405-PA 199 GA10405-PA 1..199 1..205 614 79.8 Plus
Dpse\GA24711-PA 281 GA24711-PA 7..155 12..160 290 46.7 Plus
Dpse\GA24707-PA 281 GA24707-PA 7..155 12..160 290 46.7 Plus
Dpse\GA19552-PA 262 GA19552-PA 6..147 11..150 287 49.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:16:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24837-PA 310 GM24837-PA 106..310 1..205 1065 98.5 Plus
Dsec\GM17136-PA 292 GM17136-PA 7..136 12..144 317 50.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:16:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21878-PA 293 GD21878-PA 7..136 12..144 318 50.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:16:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13214-PA 205 GJ13214-PA 1..142 1..142 633 93 Plus
Dvir\GJ16238-PA 260 GJ16238-PA 7..141 11..147 297 46.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:16:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11748-PA 198 GK11748-PA 1..154 1..155 611 89 Plus
Dwil\GK23801-PA 277 GK23801-PA 7..140 11..144 334 51.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:16:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20298-PA 318 GE20298-PA 114..318 1..205 760 96.1 Plus
Dyak\GE13145-PA 294 GE13145-PA 7..139 12..147 315 49.6 Plus

LD47783.hyp Sequence

Translation from 264 to 881

> LD47783.hyp
MQNNPSPQLPCKGILKTSRSFDKSGASFRKSAKFDELNVMQTFHPADKDY
GHMKIDEPKTPYNYTEGFDENRDELDTELLVEKLRIAANTQPSTESIEDD
GSSGDDQPLSEEERQRRREFERRRKAHYREFEAVKLARKLIQEEDDDDDD
EDKGADSRPSGSSQGASSSGRFASSSTKRSSSQADSTTSPSTSAGQNMDL
EPSNN*

LD47783.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:28
Subject Length Description Subject Range Query Range Score Percent Strand
I-2-PA 205 CG10574-PA 1..205 1..205 1057 100 Plus
I-2-PB 310 CG10574-PB 106..310 1..205 1057 100 Plus
CG6380-PB 293 CG6380-PB 7..136 12..144 315 51.5 Plus
CG6380-PA 293 CG6380-PA 7..136 12..144 315 51.5 Plus