Clone LD47792 Report

Search the DGRC for LD47792

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:477
Well:92
Vector:pOT2
Associated Gene/TranscriptCG9769-RA
Protein status:LD47792.pep: gold
Preliminary Size:1058
Sequenced Size:1342

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9769 2002-01-01 Sim4 clustering to Release 2
CG9769 2002-05-18 Blastp of sequenced clone
CG9769 2003-01-01 Sim4 clustering to Release 3
CG9769 2008-04-29 Release 5.5 accounting
CG9769 2008-08-15 Release 5.9 accounting
CG9769 2008-12-18 5.12 accounting

Clone Sequence Records

LD47792.complete Sequence

1342 bp (1342 high quality bases) assembled on 2002-05-18

GenBank Submission: AY118972

> LD47792.complete
CCGCACTATCGATAGGCCCTTTTCTTGCATCCCTAAAACATACGCGCAGC
GTGGCTGAATAGAAATTATTGCGGAAATTTTCCTTGCAAATCTTGGCCAC
CGAAAATTACCATGTCGGCTCTCAATCTGACCGTGCGCGTGCACCCGGTG
GTGCTTTTCCAGGTGGTGGACGCCTTCGAGCGGCGGAACGCGGACTCGCA
CCGCGTCATCGGCACCCTGCTCGGCTCTGTGGACAAAGGTGTGGTGGAGG
TTACCAACTGTTTCTGTGTGCCGCACAAGGAGCACGATGACCAGGTGGAG
GCAGAGCTGAGCTACGCCCTGGACATGTACGACCTCAACCGCAAGGTGAA
CTCCAACGAGAGCGTGGTAGGCTGGTGGGCCACCGGCAACGACGTTACCA
ACCACAGCTCGGTGATCCACGAGTATTACGCCCGCGAATGCAACAACCCG
GTTCACCTCACCGTGGACACTTCGCTGCAGGGCGGACGTATGGGTCTGCG
TGCTTATGTCTGCATTCAACTAGGAGTTCCCGGCGGCAAGAGCGGCTGCA
TGTTCACGCCCATTCCTGTCGAGCTGACCAGCTACGAGCCGGAGACATTT
GGGCTCAAGCTGCTTCAGAAGACCGTAGGCGTTTCGCCCGCTCACCGTCC
CAAGACCGTTCCGCCAATGCTGGACCTGGCCCAAATCTCGGAGGCCTCCA
CGAAGCTGCAGTCCCTGCTGGATCTTATTCTCAAGTACGTTGACGACGTG
ATCGCTCACAAGGTAACCCCCGACAACGCCGTCGGACGCCAGCTGCTAGA
CCTTATCCACTCCGTGCCGCACATGACCCACGAGCAGTTCACTCAGATGT
TCAACGCCAACGTACGCAACCTTCTGCTGGTCATCACGCTCTCCCAGCTC
ATCAAAACCCAGCTGCAGCTTAACGAAAAGCTCACCTTCCTGCCCACCGC
CTAGAACGACGGCGTTTGTTGAAGTGGTAATATCTACTAAGGGTGGCATT
GTAAACTGATTGTGTTTTTTATCAATGGGGGTCTACGTAATAAAGTGCTC
TGATCGCCAAAAAAAAAAAACCAAAACTTGTATCGATTACTCTGGTCAGA
ATGACATTCCATACTAAAGAAAATATATATGGGATTATCTTTTTTATAAC
TCAATTGAAGAATCAGCATGAATCCTGTGACACCTACACTAAACGACCAT
GTGGCGTTTGTAGGAGCATTCGAATCTACTGAAGACTCTTAAACACAACA
GTATTCATCACCAGGAACAAAATAAATGCATGTGCAACTGAAAATTTAGC
ACCCAACTGCTAAAACAAAAAAAAAAAAAAAAAAAAAAAAAA

LD47792.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:02:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG9769-RA 1310 CG9769-RA 1..1310 1..1311 6515 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:47:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 538591..539905 1316..1 6530 99.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:45:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:47:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4712878..4714196 1320..1 6550 99.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:34:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 4453709..4455027 1320..1 6560 99.9 Minus
Blast to na_te.dros performed on 2019-03-16 02:47:53 has no hits.

LD47792.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:48:54 Download gff for LD47792.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 538591..539905 1..1316 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:32:13 Download gff for LD47792.complete
Subject Subject Range Query Range Percent Splice Strand
CG9769-RA 1..843 112..954 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:43:53 Download gff for LD47792.complete
Subject Subject Range Query Range Percent Splice Strand
CG9769-RA 1..843 112..954 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:39:39 Download gff for LD47792.complete
Subject Subject Range Query Range Percent Splice Strand
CG9769-RA 1..843 112..954 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:36:02 Download gff for LD47792.complete
Subject Subject Range Query Range Percent Splice Strand
CG9769-RA 1..843 112..954 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:21:28 Download gff for LD47792.complete
Subject Subject Range Query Range Percent Splice Strand
CG9769-RA 1..843 112..954 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:18:36 Download gff for LD47792.complete
Subject Subject Range Query Range Percent Splice Strand
CG9769-RA 1..1058 1..1058 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:43:53 Download gff for LD47792.complete
Subject Subject Range Query Range Percent Splice Strand
CG9769-RA 1..1058 1..1058 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:39:39 Download gff for LD47792.complete
Subject Subject Range Query Range Percent Splice Strand
CG9769-RA 1..1301 15..1316 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:36:02 Download gff for LD47792.complete
Subject Subject Range Query Range Percent Splice Strand
CG9769-RA 1..1058 1..1058 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:21:28 Download gff for LD47792.complete
Subject Subject Range Query Range Percent Splice Strand
CG9769-RA 1..1301 15..1316 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:48:54 Download gff for LD47792.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4712882..4714196 1..1316 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:48:54 Download gff for LD47792.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4712882..4714196 1..1316 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:48:54 Download gff for LD47792.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4712882..4714196 1..1316 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:39:39 Download gff for LD47792.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 538604..539918 1..1316 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:08:27 Download gff for LD47792.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4453713..4455027 1..1316 99   Minus

LD47792.pep Sequence

Translation from 111 to 953

> LD47792.pep
MSALNLTVRVHPVVLFQVVDAFERRNADSHRVIGTLLGSVDKGVVEVTNC
FCVPHKEHDDQVEAELSYALDMYDLNRKVNSNESVVGWWATGNDVTNHSS
VIHEYYARECNNPVHLTVDTSLQGGRMGLRAYVCIQLGVPGGKSGCMFTP
IPVELTSYEPETFGLKLLQKTVGVSPAHRPKTVPPMLDLAQISEASTKLQ
SLLDLILKYVDDVIAHKVTPDNAVGRQLLDLIHSVPHMTHEQFTQMFNAN
VRNLLLVITLSQLIKTQLQLNEKLTFLPTA*

LD47792.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:10:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16095-PA 280 GF16095-PA 1..280 1..280 1472 98.2 Plus
Dana\GF11048-PA 285 GF11048-PA 7..283 4..278 648 44.8 Plus
Dana\GF13608-PA 354 GF13608-PA 11..275 8..270 227 28.9 Plus
Dana\GF18860-PA 344 GF18860-PA 51..314 2..265 151 22.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:10:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11433-PA 280 GG11433-PA 1..280 1..280 1496 100 Plus
Dere\GG23198-PA 285 GG23198-PA 6..280 3..275 598 40.3 Plus
Dere\GG22963-PA 338 GG22963-PA 11..275 8..270 227 29.3 Plus
Dere\GG11147-PA 340 GG11147-PA 50..310 5..265 150 22.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:10:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18119-PA 280 GH18119-PA 1..280 1..280 1469 97.9 Plus
Dgri\GH21473-PA 283 GH21473-PA 5..281 8..278 579 42.1 Plus
Dgri\GH20991-PA 345 GH20991-PA 1..275 1..270 227 29 Plus
Dgri\GH22436-PA 344 GH22436-PA 54..314 5..265 149 22.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:16:49
Subject Length Description Subject Range Query Range Score Percent Strand
eIF3f1-PA 280 CG9769-PA 1..280 1..280 1453 100 Plus
eIF3f2-PA 286 CG8335-PA 7..281 3..275 596 40.1 Plus
Rpn8-PC 338 CG3416-PC 11..276 8..271 259 28.7 Plus
Rpn8-PA 338 CG3416-PA 11..276 8..271 259 28.7 Plus
Rpn8-PB 358 CG3416-PB 11..276 8..271 259 28.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:10:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23834-PA 280 GI23834-PA 1..280 1..280 1446 95.7 Plus
Dmoj\GI19950-PA 290 GI19950-PA 8..288 4..278 585 41.8 Plus
Dmoj\GI21325-PA 340 GI21325-PA 1..275 1..270 228 28.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:10:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21488-PA 280 GL21488-PA 1..280 1..280 1465 96.8 Plus
Dper\GL16249-PA 288 GL16249-PA 3..283 1..275 594 41.2 Plus
Dper\GL20068-PA 343 GL20068-PA 11..275 8..270 229 28.9 Plus
Dper\GL13811-PA 347 GL13811-PA 57..317 5..265 152 22.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:10:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22021-PA 280 GA22021-PA 1..280 1..280 1465 96.8 Plus
Dpse\GA25107-PA 288 GA25107-PA 3..283 1..275 593 41.2 Plus
Dpse\GA17437-PA 343 GA17437-PA 11..275 8..270 229 28.9 Plus
Dpse\GA19964-PA 347 GA19964-PA 57..317 5..265 152 22.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:10:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10688-PA 280 GM10688-PA 1..280 1..280 1496 100 Plus
Dsec\GM16538-PA 285 GM16538-PA 4..280 5..275 611 41.2 Plus
Dsec\GM11856-PA 338 GM11856-PA 11..275 8..270 227 29.3 Plus
Dsec\GM26445-PA 341 GM26445-PA 51..311 5..265 150 22.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:10:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19663-PA 280 GD19663-PA 1..280 1..280 1496 100 Plus
Dsim\GD10400-PA 285 GD10400-PA 4..280 5..275 609 40.9 Plus
Dsim\GD11854-PA 338 GD11854-PA 11..275 8..270 227 29.3 Plus
Dsim\CSN6-PA 341 GD20964-PA 51..311 5..265 150 22.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:10:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23292-PA 280 GJ23292-PA 1..280 1..280 1475 97.9 Plus
Dvir\GJ17826-PA 290 GJ17826-PA 8..288 4..278 579 41.1 Plus
Dvir\GJ21597-PA 343 GJ21597-PA 1..275 1..270 228 28.6 Plus
Dvir\GJ23049-PA 340 GJ23049-PA 50..310 5..265 150 22.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:10:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14430-PA 280 GK14430-PA 1..280 1..280 1476 97.9 Plus
Dwil\GK21334-PA 286 GK21334-PA 11..284 8..278 631 43.3 Plus
Dwil\GK22207-PA 342 GK22207-PA 1..275 1..270 232 29 Plus
Dwil\GK11302-PA 338 GK11302-PA 48..308 5..265 159 22.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:10:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25339-PA 280 GE25339-PA 1..280 1..280 1491 99.6 Plus
Dyak\GE20747-PA 279 GE20747-PA 5..274 8..275 621 42.3 Plus
Dyak\GE14400-PA 338 GE14400-PA 11..275 8..270 227 28.9 Plus
Dyak\GE10312-PA 340 GE10312-PA 50..310 5..265 150 22.9 Plus

LD47792.hyp Sequence

Translation from 111 to 953

> LD47792.hyp
MSALNLTVRVHPVVLFQVVDAFERRNADSHRVIGTLLGSVDKGVVEVTNC
FCVPHKEHDDQVEAELSYALDMYDLNRKVNSNESVVGWWATGNDVTNHSS
VIHEYYARECNNPVHLTVDTSLQGGRMGLRAYVCIQLGVPGGKSGCMFTP
IPVELTSYEPETFGLKLLQKTVGVSPAHRPKTVPPMLDLAQISEASTKLQ
SLLDLILKYVDDVIAHKVTPDNAVGRQLLDLIHSVPHMTHEQFTQMFNAN
VRNLLLVITLSQLIKTQLQLNEKLTFLPTA*

LD47792.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:06:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG9769-PA 280 CG9769-PA 1..280 1..280 1453 100 Plus
CG8335-PA 286 CG8335-PA 7..281 3..275 596 40.1 Plus
Rpn8-PC 338 CG3416-PC 11..276 8..271 259 28.7 Plus
Rpn8-PA 338 CG3416-PA 11..276 8..271 259 28.7 Plus
Rpn8-PB 358 CG3416-PB 11..276 8..271 259 28.7 Plus