Clone LD47795 Report

Search the DGRC for LD47795

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:477
Well:95
Vector:pOT2
Associated Gene/TranscriptCG12006-RA
Protein status:LD47795.pep: gold
Preliminary Size:2350
Sequenced Size:2245

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12006 2001-01-01 Release 2 assignment
CG12006 2003-01-01 Sim4 clustering to Release 3
CG12006 2003-01-14 Blastp of sequenced clone
CG12006 2008-04-29 Release 5.5 accounting
CG12006 2008-08-15 Release 5.9 accounting
CG12006 2008-12-18 5.12 accounting

Clone Sequence Records

LD47795.complete Sequence

2245 bp (2245 high quality bases) assembled on 2003-01-14

GenBank Submission: BT003240

> LD47795.complete
TTTTGCTTTGCACTGCTTTCGCGTTATTTTTAGCCGCTTTTTTTGCCGAA
ACGATTTTTTTGGTGGCTAAAAGCCATCGCAATTTCCACCAAATCTGACC
GGTTGGTAAACCACCAACGCACGCAACTATTTAAGGTGACTCAAAACCAT
CCGGTTTTCCGGGTGGCCACAATTTTGCGTTTTTGGACCAACGCGGCGTT
ATTATAATGAAGCTGATCTACGTGTTTCTCCTAATCTTGGCCGTGCGCTT
GGCCTCTGTTTTCGTGGTCCAAACATATTACGTTCCGGATGAATACTGGC
AGAGTTTAGAAGTGGCCCACAAACTGACCTTTGGCTATGGCTACCTGACT
TGGGAATGGGTTCAGGGCATTCGCAGCTATGTGTACCCCCTGCTGATCGC
CGGACTCTATAAAATCCTGGCCCTCCTGCAATTGGATAGTGCCCACCTTC
TGGTTGTGCTGCCAAGGATTGTACAGGCTCTGCTTTCGGCCTACTCCGAC
TATCGCTTCTTTGTGTGGACGGGCAAGCGAAAGTGGGCGCTGTTTCTGAT
CCTGGTCCCGTGGTTCTGGTTCTACACGGGCTCGCGCACTCTGGCCAACA
CATTGGAAGCCTCCCTGACAACGATTGCGTTGAGCTACTTCCCCTGGTAT
GGCGAATCCACTGCTTACCTGTGGCCAGCTGCCATCTGCTGCTTCCTGAG
ACCTACGGCTGCTGTTATTTGGCTCCCATTATCCTTGTATCATCTGCGCA
GAAGTCGCCAGAACGTGCTGGAGCTGATCCTGAAGCGATTTGTGCTCATT
GGTTTACTCGTTGCTGGTCTGGGAATAGCCATCGATACCTATTGGCATGG
CCAGTTGATAGTGACTCCGTACGAGTTCCTCAAGTACAACATATTTAACA
ACATCGGCAGCTTCTATGGCTCACACCCTTGGCACTGGTACTTCAGCGTG
GGCTTGCCCACAGTCCTGGGCATCAACACCTTGCCCTTCATCTTTGGCGT
GATGGAAACTGTGAAGAAGTCGGAGAAGTACCCTGTTAGCAAGCAGCTTC
TGATCACCATCTTCCTGACTCTGGTTGTTCTGAGTGCTGTGGAGCACAAG
GAGTTTCGATTTGTTTCCCCGCTCCTGCCGCTCTGCTTGTACGTTATCAC
AGATGCCCTATCGCGTTGGAGCATCAGAGCCTCGAGCACAATGTTGTGGA
CCACCGCTTTGGTCATTCTCGTGGGCAATGTTATGCCCGCCTGGTATCTG
AGCACAGTGCATCAGAAGGGACCCATTGAACTGATGCCCAAGTTGAGAGA
AATAGCTCGGGAATACAGAGATGAACGCGAACACCAGGCGAATATTCTCT
TCCTAATGCCTTGCCACTCCACACCATACTATAGTCACATTCACCAGAAT
GTCACCATGAGGTTTTTGACTTGCGAACCGAACCTGGAAAAGAAGGAGCA
GTATAAGGACGAGGCCGATCGCTTCTTTGAGGATCCCGTGCACTGGATTA
ACTCGCACATTCCTATGCATCCGCTCACCGCTTTGCCCACACATGTGGTT
CTGTTCGATCCGCTGGCCGAGAACATAAGCGTGTTCCTCCGTAACTACCG
GCTGCTCCATCGCATCGAGCACGCAGAGGTAACACGGCTGGAGGGCTCGC
AGGCTCTGGTGGACCAGTGGTCGGAGGCACTGGGTGCCCAGTCACCTAAT
CTTGCTTCTCTCTTGCAGAATCGCCAATCGCGCACAGGTCGTTCCATTTT
GGTCTACCAGCGCTTGAAGAAGGGCGAGGAGAATGCATTTAATCGCGGGC
CGGATTCAGGACAGCACGAGCCGGATGTCCACGATCATCCGCCGCTGGAG
GATCTCGTCCTGGCCAACGAGAACGAGAATCTGTTCAATTAGATAATAGA
GAAAATAAGAGAACCCACCACCGACGCCCTCCGTTCAAAAGCAAGAAGCA
ATGACACATTTGAGATTAACTAATAGATACAAACCTATATTTTGTATCCA
TTTTTGGCCTTAGCAAAAGTTTTTAAAACGTTGTCGCCCGAAGAGAACAG
AAAACAGAAACGTAGTTGATATTCGTAGGCGCATGTTGTGTACTCTGTGC
TAGTTGCTAATGTGTAAGCCATCTGAGTATTTAGACGCTAGAGGCAATGT
ATTTTACGTAGTCGATACAACACACTTGATCTGTCCTTTCTTTAAGATCT
CGAAATAAAGGTTCAGTGGAGTAGATAAAAAAAAAAAAAAAAAAA

LD47795.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:26:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG12006-RA 2390 CG12006-RA 100..2328 1..2229 11130 99.9 Plus
CG12006-RB 2300 CG12006-RB 100..1727 1..1628 8125 99.9 Plus
CG12006.a 2251 CG12006.a 204..1698 134..1628 7460 99.9 Plus
CG12006.a 2251 CG12006.a 1697..2209 1717..2229 2565 100 Plus
CG12006-RB 2300 CG12006-RB 1726..2238 1717..2229 2565 100 Plus
CG12006.a 2251 CG12006.a 13..149 1..137 685 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:57:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 3812553..3813397 1382..2226 4180 99.6 Plus
chr3L 24539361 chr3L 3811910..3812489 802..1381 2810 99 Plus
chr3L 24539361 chr3L 3811380..3811852 330..802 2230 98.1 Plus
chr3L 24539361 chr3L 3810911..3811111 134..334 960 98.5 Plus
chr3L 24539361 chr3L 3810719..3810856 1..137 640 99.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:45:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:57:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3813114..3813961 1382..2229 4240 100 Plus
3L 28110227 3L 3812471..3813053 802..1384 2915 100 Plus
3L 28110227 3L 3811941..3812413 330..802 2350 99.8 Plus
3L 28110227 3L 3811472..3811672 134..334 990 99.5 Plus
3L 28110227 3L 3811281..3811417 1..137 685 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:03:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 3813114..3813961 1382..2229 4240 100 Plus
3L 28103327 3L 3812471..3813053 802..1384 2915 100 Plus
3L 28103327 3L 3811941..3812413 330..802 2350 99.7 Plus
3L 28103327 3L 3811472..3811672 134..334 990 99.5 Plus
3L 28103327 3L 3811281..3811417 1..137 685 100 Plus
Blast to na_te.dros performed 2019-03-15 19:57:22
Subject Length Description Subject Range Query Range Score Percent Strand
Idefix 7411 Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). 5362..5485 2105..1987 130 59.7 Minus

LD47795.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:58:11 Download gff for LD47795.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 3810719..3810854 1..135 99 -> Plus
chr3L 3810913..3811111 136..334 98 -> Plus
chr3L 3811385..3811852 335..802 98 -> Plus
chr3L 3811911..3812492 803..1384 98 -> Plus
chr3L 3812556..3813397 1385..2226 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:56:52 Download gff for LD47795.complete
Subject Subject Range Query Range Percent Splice Strand
CG12006-RA 1..1686 207..1892 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:04:01 Download gff for LD47795.complete
Subject Subject Range Query Range Percent Splice Strand
CG12006-RA 1..1686 207..1892 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:47:44 Download gff for LD47795.complete
Subject Subject Range Query Range Percent Splice Strand
CG12006-RA 1..1686 207..1892 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:11:15 Download gff for LD47795.complete
Subject Subject Range Query Range Percent Splice Strand
CG12006-RA 1..1686 207..1892 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:12:46 Download gff for LD47795.complete
Subject Subject Range Query Range Percent Splice Strand
CG12006-RA 13..2238 1..2226 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:56:52 Download gff for LD47795.complete
Subject Subject Range Query Range Percent Splice Strand
CG12006-RA 13..2238 1..2226 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:04:01 Download gff for LD47795.complete
Subject Subject Range Query Range Percent Splice Strand
CG12006-RA 19..2244 1..2226 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:47:44 Download gff for LD47795.complete
Subject Subject Range Query Range Percent Splice Strand
CG12006-RA 13..2238 1..2226 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:11:15 Download gff for LD47795.complete
Subject Subject Range Query Range Percent Splice Strand
CG12006-RA 19..2244 1..2226 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:58:11 Download gff for LD47795.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3811281..3811415 1..135 100 -> Plus
3L 3811474..3811672 136..334 99 -> Plus
3L 3811946..3812413 335..802 100 -> Plus
3L 3812472..3813053 803..1384 100 -> Plus
3L 3813117..3813958 1385..2226 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:58:11 Download gff for LD47795.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3811281..3811415 1..135 100 -> Plus
3L 3811474..3811672 136..334 99 -> Plus
3L 3811946..3812413 335..802 100 -> Plus
3L 3812472..3813053 803..1384 100 -> Plus
3L 3813117..3813958 1385..2226 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:58:11 Download gff for LD47795.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3811281..3811415 1..135 100 -> Plus
3L 3811474..3811672 136..334 99 -> Plus
3L 3811946..3812413 335..802 100 -> Plus
3L 3812472..3813053 803..1384 100 -> Plus
3L 3813117..3813958 1385..2226 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:04:01 Download gff for LD47795.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3811474..3811672 136..334 99 -> Plus
arm_3L 3811281..3811415 1..135 100 -> Plus
arm_3L 3811946..3812413 335..802 100 -> Plus
arm_3L 3812472..3813053 803..1384 100 -> Plus
arm_3L 3813117..3813958 1385..2226 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:19:03 Download gff for LD47795.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3811946..3812413 335..802 100 -> Plus
3L 3812472..3813053 803..1384 100 -> Plus
3L 3813117..3813958 1385..2226 100   Plus
3L 3811281..3811415 1..135 100 -> Plus
3L 3811474..3811672 136..334 99 -> Plus

LD47795.hyp Sequence

Translation from 206 to 1891

> LD47795.hyp
MKLIYVFLLILAVRLASVFVVQTYYVPDEYWQSLEVAHKLTFGYGYLTWE
WVQGIRSYVYPLLIAGLYKILALLQLDSAHLLVVLPRIVQALLSAYSDYR
FFVWTGKRKWALFLILVPWFWFYTGSRTLANTLEASLTTIALSYFPWYGE
STAYLWPAAICCFLRPTAAVIWLPLSLYHLRRSRQNVLELILKRFVLIGL
LVAGLGIAIDTYWHGQLIVTPYEFLKYNIFNNIGSFYGSHPWHWYFSVGL
PTVLGINTLPFIFGVMETVKKSEKYPVSKQLLITIFLTLVVLSAVEHKEF
RFVSPLLPLCLYVITDALSRWSIRASSTMLWTTALVILVGNVMPAWYLST
VHQKGPIELMPKLREIAREYRDEREHQANILFLMPCHSTPYYSHIHQNVT
MRFLTCEPNLEKKEQYKDEADRFFEDPVHWINSHIPMHPLTALPTHVVLF
DPLAENISVFLRNYRLLHRIEHAEVTRLEGSQALVDQWSEALGAQSPNLA
SLLQNRQSRTGRSILVYQRLKKGEENAFNRGPDSGQHEPDVHDHPPLEDL
VLANENENLFN*

LD47795.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:44:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG12006-PA 561 CG12006-PA 1..561 1..561 2975 100 Plus
CG12006-PB 531 CG12006-PB 1..531 1..561 2788 94.7 Plus
CG11851-PA 623 CG11851-PA 102..416 30..329 164 26.4 Plus

LD47795.pep Sequence

Translation from 206 to 1891

> LD47795.pep
MKLIYVFLLILAVRLASVFVVQTYYVPDEYWQSLEVAHKLTFGYGYLTWE
WVQGIRSYVYPLLIAGLYKILALLQLDSAHLLVVLPRIVQALLSAYSDYR
FFVWTGKRKWALFLILVPWFWFYTGSRTLANTLEASLTTIALSYFPWYGE
STAYLWPAAICCFLRPTAAVIWLPLSLYHLRRSRQNVLELILKRFVLIGL
LVAGLGIAIDTYWHGQLIVTPYEFLKYNIFNNIGSFYGSHPWHWYFSVGL
PTVLGINTLPFIFGVMETVKKSEKYPVSKQLLITIFLTLVVLSAVEHKEF
RFVSPLLPLCLYVITDALSRWSIRASSTMLWTTALVILVGNVMPAWYLST
VHQKGPIELMPKLREIAREYRDEREHQANILFLMPCHSTPYYSHIHQNVT
MRFLTCEPNLEKKEQYKDEADRFFEDPVHWINSHIPMHPLTALPTHVVLF
DPLAENISVFLRNYRLLHRIEHAEVTRLEGSQALVDQWSEALGAQSPNLA
SLLQNRQSRTGRSILVYQRLKKGEENAFNRGPDSGQHEPDVHDHPPLEDL
VLANENENLFN*

LD47795.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:47:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24224-PA 523 GF24224-PA 1..510 1..540 2273 80.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:47:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15159-PA 531 GG15159-PA 1..531 1..561 2694 91.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:47:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16427-PA 522 GH16427-PA 1..522 1..561 2196 75.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:16:26
Subject Length Description Subject Range Query Range Score Percent Strand
PIG-B-PA 561 CG12006-PA 1..561 1..561 2975 100 Plus
PIG-B-PB 531 CG12006-PB 1..531 1..561 2788 94.7 Plus
CG11851-PA 623 CG11851-PA 102..416 30..329 164 26.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:47:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12509-PA 518 GI12509-PA 1..518 1..561 2204 74 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:47:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21004-PA 756 GL21004-PA 1..402 1..402 1871 86.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:47:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11329-PA 519 GA11329-PA 1..516 1..544 2236 78.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:47:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14587-PA 531 GM14587-PA 1..531 1..561 2729 92.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:47:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13779-PA 555 GD13779-PA 59..555 35..561 2512 90.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:47:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12415-PA 519 GJ12415-PA 1..519 1..561 2204 75.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:47:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20524-PA 521 GK20524-PA 1..521 1..561 2160 74.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:47:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21379-PA 527 GE21379-PA 1..527 1..561 2655 90.2 Plus