Clone LD47843 Report

Search the DGRC for LD47843

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:478
Well:43
Vector:pOT2
Associated Gene/TranscriptSlmap-RA
Protein status:LD47843.pep: gold
Preliminary Size:3182
Sequenced Size:3022

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17494 2001-01-01 Release 2 assignment
CG17494 2001-09-19 Blastp of sequenced clone
CG17494 2003-01-01 Sim4 clustering to Release 3
CG17494 2008-04-29 Release 5.5 accounting
CG17494 2008-08-15 Release 5.9 accounting
CG17494 2008-12-18 5.12 accounting

Clone Sequence Records

LD47843.complete Sequence

3022 bp (3022 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058732

> LD47843.complete
ACCAGTTGATTGTCGCTATTTTGACGGAAATATTTTAAGTATGCACACAA
ATTTACCGCGAAACCAGGTGTTTTTGTACAACAATTGTTCAAAGTTAAAG
AAAACTAAAAAACACGGGTAGAAGGTTGCAACAATTAATACAGGAAAATT
ACAAAATTCCAAGGTTTGTTTGGATGTAAAGTAATGGTCTTGGTGTGCAA
TGAGTGGTTAAAAAATAATGTTGATGAAGACCAGACGTCAAGTTCATTAT
CGCCGACGCCAGCATCAGGAGCAGTCGGATCAACGGCATTAAACAGAACT
GGCACAACCGACACGGCCACGGAATTACCTCAGACGACCAGATATCCATC
CGGGGAAGAACCTGCTGTGAAGCCAGAGGAGGCGCAATACGCTTTAAACA
TGGAAACTGAAAAAAATTTGGAGCAGGACAATTTCTTTCATATAATGGAC
ATAAAAGAAGATATGGCTGATAGTAACAACGAGGCGTCCACGAAGAACCA
GGAAAATAATAATATGGAACTTTGTGATTCCAACACAGTATGTATTGACC
GACGTCCGGCTGAAGTTTCCCAGCATGCTATGAATATGGCCATGAACTCT
GTGCTGAATGCAAATAACACCGGGGTTGGAGTTCGAGTAACTACTGCCTG
CAGTCTGTTTAGCCCACTAGGAGTACTAAACAATAGTGCTTTACAAAGGG
AGGTGGCATCGGAATGCGGCACTTTACAAGTCTCTTCAGTGCCCCCAACT
TCTGGCGTAGATCTAGACATAGGATTGGAGTCTGCCCCAACGCCATGTAA
GGGTGCAGCAAAAATCGTACTCCTATGTGAACCAAAGTCGCACAAGTTTG
AAACGAGATCTATATTGCTGCAGCCCAACCAGGATTGCAAGGTGGGCCGC
CTTATAGCTAAAAGTAAGGCGGGTGAGGGGAACGCTATATTTGACTGTAA
AGTATTGTCAAGAAACCATGCGATTTTGTGGTACACTCCAGACGGTAAAT
TCTGGGTCAAAGACACAAAATCCAGCAACGGTACCTTTATTAACGACAAC
AAGTTGGGTAGTGATCCAGCGGAACTACATTATGGCGATATTGTGAAGTT
CGGCGTTGAGGTAATTGAGAATTCACGTCAGGAGGTACACGGGTGTATCC
TGGCCCGTGTCGCCCTCTTTCTACCCAATGGACAAGAGGCCATTTCAGTT
GAGGCAGAGCAGATGATGTTGACTGTGCCTAACCGAATCAGCTTTGATGA
AGTGCAGCGCCTAAGCTCGTTCCTCCAAGAGGCTGCACAAAGGGAAAAAT
CTCTGAAAGCTAAATTAAGCAGCTTGCAAGGCGTCCTTGATAACACCAGA
AAGAACTCTGCGATGTGTTGGCAAAGCATGATCACTGAAGACCAATTGCT
TCACAAGATAAATATTCTGGAAAAGAAACTGCAAATGATGGAAAAGAACA
TTCCAGAGAATGCACTGCGAAACGAGATTGTAAAGCTTCTTGAGGACAAA
ACAACGTACCAGTTGACTGCCAAAGAGGCCCTGCGGAAGGTCTACCAGGA
ACGCTGCGATGCTATGCAAATGCTCTCTAAGATGGAGATGGCCTACGCCA
CTTCTGAAAACGAGTGCGGCATACTTCGCGCTCAAGTTCTAACACTAAAG
CAGACGCTGACTGATTTCAATACCCGGTTAGAGGAACTTCAGCAGGAGTA
CATGGAATTCAAGAAGGAGTCAGTGCGCCAAGAACAAGAGGCTAAAGAGC
AAGAATCACGCAGCTTAGAGGTGCTAAATGGAAAGCTGACGACGCAGGAG
CTCGAGCTTAAGGAGCTTCGTCTGCAGGTCTCGCGAATCCATCGCGATTT
ATCTGAGTCTGATACTGAACATTTGAAGGAGCGAATTGTCTTAAAAAACT
TAGATACAATAAATCTTGACGATTATGACCACGCTCAAGATAGAGCGCTA
AATGAAAGGGATGATAATGAAAGTTCTGACGATGATATTTTGTCTGTGTC
ACCAGCTAAAAATGTGTTGTCTGAAACGAAAAAAAGGAAGCTAAAACTAA
GTAATCCCGATTTAGAAGAAGGCAATTATAAATCGAACGTCTTAAGATTG
CTAAAGAACTCCGATCTTGGCAAGGGAGAAGAAGGATCTTCAGTGCTTAA
AGCTATTTTTAATGGTGACGATGAAGCCTTTGAATGCAAAGTTAAGGAGG
AGGAGGATATGGCAAACGATTCAGTTCCAACAGAGTTCGTTAGCAGAAAT
ACATCCGAAATCGTGGATCACTTTAAAAACCATTCTTCAACTACACATAC
AATTTTAGAGGATTCGGCTGCAACGAAATTGTCAGCCCCTAATGCGGAAA
GTAAGGAAAAGCTTGTAGACGTTGAGGAAAATCTTAATATTCCAAATGCA
TTACCGACGGAGCAGGCAATTGATATGTTACAAGAGGAATGTGATACGTA
CAAGAAAAAAACAGCTCATTTAACAAGTGAAATACACTTCCTGCAAGGAC
AAATTGAGCTATTAAAGAAGCAGCTTGAGAAAGGCGTTGATCACAATTTT
GCAACAAACTTGCAGGAAGAGGAAAACAGTTTACCGCGTGAGACGTTAGA
GCTAATTGATAATCGAGATAGCACAGAAGGTGTTTGGAATGAGGACATTG
CAACCATTAATAACCCCAACGTAGAAAATGAAGAAGAACTAATTGTTTAC
AAAGAGCTTCTTGAAAATTCGGAGCTTAACAACATGCAGCTTCGCAAAGA
AATCTCTGAGCTGCACTTAAAGCATAAACACATCCCATTTAGTAAACAAG
AGTTACTATGCCGCTTTCTACCTCTTGGCTGTGTTGCCATCGGCCTGCTC
ATATATTTTCTTTCCAGTCGAATTTAAGCGCCATTCTTTTAGCTAATGAG
GAAAACTCGCGCATTAAAAGCTTTTATCTACACACTATTAGTGTACACTG
GGATGACAGCATATTTAGTTAATGCTTGCGTTGTCGTCAAGCTTTATTAA
AAAAAAAAAAAAAAAAAAAAAA

LD47843.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:16:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG17494.d 3786 CG17494.d 41..3041 1..3001 15005 100 Plus
CG17494-RA 3510 CG17494-RA 41..3041 1..3001 15005 100 Plus
CG17494.b 3452 CG17494.b 41..3038 1..3001 14935 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:09:05
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 22471038..22472353 161..1476 6550 99.8 Plus
chr2L 23010047 chr2L 22475961..22476922 2037..2998 4780 99.8 Plus
chr2L 23010047 chr2L 22475340..22475902 1475..2037 2815 100 Plus
chr2L 23010047 chr2L 22470310..22470474 1..165 810 99.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:45:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:09:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22579818..22581133 161..1476 6580 100 Plus
2L 23513712 2L 22584741..22585705 2037..3001 4825 100 Plus
2L 23513712 2L 22584120..22584682 1475..2037 2815 100 Plus
2L 23513712 2L 22579090..22579254 1..165 825 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:40:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22579818..22581133 161..1476 6580 100 Plus
2L 23513712 2L 22584741..22585705 2037..3001 4825 100 Plus
2L 23513712 2L 22584120..22584682 1475..2037 2815 100 Plus
2L 23513712 2L 22579090..22579254 1..165 825 100 Plus
Blast to na_te.dros performed on 2019-03-16 06:09:04 has no hits.

LD47843.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:09:53 Download gff for LD47843.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 22470310..22470472 1..163 99 -> Plus
chr2L 22471041..22472353 164..1476 99 -> Plus
chr2L 22475342..22475902 1477..2037 100 -> Plus
chr2L 22475962..22476922 2038..2998 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:32:16 Download gff for LD47843.complete
Subject Subject Range Query Range Percent Splice Strand
CG17494-RB 68..2784 161..2877 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:58:36 Download gff for LD47843.complete
Subject Subject Range Query Range Percent Splice Strand
CG17494-RD 1..2694 184..2877 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:15:53 Download gff for LD47843.complete
Subject Subject Range Query Range Percent Splice Strand
CG17494-RA 1..2694 184..2877 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:28:27 Download gff for LD47843.complete
Subject Subject Range Query Range Percent Splice Strand
CG17494-RB 68..2784 161..2877 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:16:08 Download gff for LD47843.complete
Subject Subject Range Query Range Percent Splice Strand
Slmap-RA 1..2694 184..2877 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:45:28 Download gff for LD47843.complete
Subject Subject Range Query Range Percent Splice Strand
CG17494-RA 27..3024 1..2998 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:58:36 Download gff for LD47843.complete
Subject Subject Range Query Range Percent Splice Strand
CG17494-RA 27..3024 1..2998 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:15:53 Download gff for LD47843.complete
Subject Subject Range Query Range Percent Splice Strand
CG17494-RA 19..3016 1..2998 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:28:28 Download gff for LD47843.complete
Subject Subject Range Query Range Percent Splice Strand
CG17494-RA 27..3024 1..2998 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:16:08 Download gff for LD47843.complete
Subject Subject Range Query Range Percent Splice Strand
Slmap-RA 19..3016 1..2998 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:09:53 Download gff for LD47843.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22579090..22579252 1..163 100 -> Plus
2L 22579821..22581133 164..1476 100 -> Plus
2L 22584122..22584682 1477..2037 100 -> Plus
2L 22584742..22585702 2038..2998 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:09:53 Download gff for LD47843.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22579090..22579252 1..163 100 -> Plus
2L 22579821..22581133 164..1476 100 -> Plus
2L 22584122..22584682 1477..2037 100 -> Plus
2L 22584742..22585702 2038..2998 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:09:53 Download gff for LD47843.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22579090..22579252 1..163 100 -> Plus
2L 22579821..22581133 164..1476 100 -> Plus
2L 22584122..22584682 1477..2037 100 -> Plus
2L 22584742..22585702 2038..2998 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:15:53 Download gff for LD47843.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22471822..22471984 1..163 100 -> Plus
arm_2L 22472553..22473865 164..1476 100 -> Plus
arm_2L 22476854..22477414 1477..2037 100 -> Plus
arm_2L 22477474..22478434 2038..2998 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:05:14 Download gff for LD47843.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22579821..22581133 164..1476 100 -> Plus
2L 22584122..22584682 1477..2037 100 -> Plus
2L 22584742..22585702 2038..2998 100   Plus
2L 22579090..22579252 1..163 100 -> Plus

LD47843.pep Sequence

Translation from 183 to 2876

> LD47843.pep
MVLVCNEWLKNNVDEDQTSSSLSPTPASGAVGSTALNRTGTTDTATELPQ
TTRYPSGEEPAVKPEEAQYALNMETEKNLEQDNFFHIMDIKEDMADSNNE
ASTKNQENNNMELCDSNTVCIDRRPAEVSQHAMNMAMNSVLNANNTGVGV
RVTTACSLFSPLGVLNNSALQREVASECGTLQVSSVPPTSGVDLDIGLES
APTPCKGAAKIVLLCEPKSHKFETRSILLQPNQDCKVGRLIAKSKAGEGN
AIFDCKVLSRNHAILWYTPDGKFWVKDTKSSNGTFINDNKLGSDPAELHY
GDIVKFGVEVIENSRQEVHGCILARVALFLPNGQEAISVEAEQMMLTVPN
RISFDEVQRLSSFLQEAAQREKSLKAKLSSLQGVLDNTRKNSAMCWQSMI
TEDQLLHKINILEKKLQMMEKNIPENALRNEIVKLLEDKTTYQLTAKEAL
RKVYQERCDAMQMLSKMEMAYATSENECGILRAQVLTLKQTLTDFNTRLE
ELQQEYMEFKKESVRQEQEAKEQESRSLEVLNGKLTTQELELKELRLQVS
RIHRDLSESDTEHLKERIVLKNLDTINLDDYDHAQDRALNERDDNESSDD
DILSVSPAKNVLSETKKRKLKLSNPDLEEGNYKSNVLRLLKNSDLGKGEE
GSSVLKAIFNGDDEAFECKVKEEEDMANDSVPTEFVSRNTSEIVDHFKNH
SSTTHTILEDSAATKLSAPNAESKEKLVDVEENLNIPNALPTEQAIDMLQ
EECDTYKKKTAHLTSEIHFLQGQIELLKKQLEKGVDHNFATNLQEEENSL
PRETLELIDNRDSTEGVWNEDIATINNPNVENEEELIVYKELLENSELNN
MQLRKEISELHLKHKHIPFSKQELLCRFLPLGCVAIGLLIYFLSSRI*

LD47843.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:17:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22729-PA 962 GF22729-PA 1..445 1..442 1308 59.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:17:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21402-PA 497 GG21402-PA 1..493 94..586 2333 88.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:17:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13626-PA 895 GH13626-PA 66..503 114..564 1523 67.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:46:27
Subject Length Description Subject Range Query Range Score Percent Strand
Slmap-PD 897 CG17494-PD 1..897 1..897 4577 100 Plus
Slmap-PA 897 CG17494-PA 1..897 1..897 4577 100 Plus
zip-PH 1964 CG15792-PH 925..1452 340..842 165 22.4 Plus
zip-PG 1971 CG15792-PG 917..1444 340..842 165 22.4 Plus
zip-PE 1971 CG15792-PE 917..1444 340..842 165 22.4 Plus
zip-PC 1971 CG15792-PC 917..1444 340..842 165 22.4 Plus
zip-PF 1979 CG15792-PF 925..1452 340..842 165 22.4 Plus
zip-PB 2011 CG15792-PB 957..1484 340..842 165 22.4 Plus
zip-PD 2016 CG15792-PD 962..1489 340..842 165 22.4 Plus
zip-PI 2024 CG15792-PI 970..1497 340..842 165 22.4 Plus
zip-PA 2056 CG15792-PA 1002..1529 340..842 165 22.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:17:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11737-PA 869 GI11737-PA 274..451 365..542 723 77 Plus
Dmoj\GI11737-PA 869 GI11737-PA 168..307 105..268 212 37.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:17:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21139-PA 967 GL21139-PA 1..967 1..897 2164 52 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:17:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA29082-PA 967 GA29082-PA 1..967 1..897 2073 51.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:17:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26733-PA 889 GM26733-PA 1..889 1..897 4321 91.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:17:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13103-PA 873 GJ13103-PA 607..873 633..897 345 38.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:17:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23714-PA 886 GK23714-PA 127..886 158..897 1887 54.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:17:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22680-PA 901 GE22680-PA 1..901 1..897 3770 80.8 Plus

LD47843.hyp Sequence

Translation from 183 to 2876

> LD47843.hyp
MVLVCNEWLKNNVDEDQTSSSLSPTPASGAVGSTALNRTGTTDTATELPQ
TTRYPSGEEPAVKPEEAQYALNMETEKNLEQDNFFHIMDIKEDMADSNNE
ASTKNQENNNMELCDSNTVCIDRRPAEVSQHAMNMAMNSVLNANNTGVGV
RVTTACSLFSPLGVLNNSALQREVASECGTLQVSSVPPTSGVDLDIGLES
APTPCKGAAKIVLLCEPKSHKFETRSILLQPNQDCKVGRLIAKSKAGEGN
AIFDCKVLSRNHAILWYTPDGKFWVKDTKSSNGTFINDNKLGSDPAELHY
GDIVKFGVEVIENSRQEVHGCILARVALFLPNGQEAISVEAEQMMLTVPN
RISFDEVQRLSSFLQEAAQREKSLKAKLSSLQGVLDNTRKNSAMCWQSMI
TEDQLLHKINILEKKLQMMEKNIPENALRNEIVKLLEDKTTYQLTAKEAL
RKVYQERCDAMQMLSKMEMAYATSENECGILRAQVLTLKQTLTDFNTRLE
ELQQEYMEFKKESVRQEQEAKEQESRSLEVLNGKLTTQELELKELRLQVS
RIHRDLSESDTEHLKERIVLKNLDTINLDDYDHAQDRALNERDDNESSDD
DILSVSPAKNVLSETKKRKLKLSNPDLEEGNYKSNVLRLLKNSDLGKGEE
GSSVLKAIFNGDDEAFECKVKEEEDMANDSVPTEFVSRNTSEIVDHFKNH
SSTTHTILEDSAATKLSAPNAESKEKLVDVEENLNIPNALPTEQAIDMLQ
EECDTYKKKTAHLTSEIHFLQGQIELLKKQLEKGVDHNFATNLQEEENSL
PRETLELIDNRDSTEGVWNEDIATINNPNVENEEELIVYKELLENSELNN
MQLRKEISELHLKHKHIPFSKQELLCRFLPLGCVAIGLLIYFLSSRI*

LD47843.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:36:34
Subject Length Description Subject Range Query Range Score Percent Strand
Slmap-PD 897 CG17494-PD 1..897 1..897 4577 100 Plus
Slmap-PA 897 CG17494-PA 1..897 1..897 4577 100 Plus
zip-PH 1964 CG15792-PH 925..1452 340..842 165 22.4 Plus
zip-PG 1971 CG15792-PG 917..1444 340..842 165 22.4 Plus
zip-PE 1971 CG15792-PE 917..1444 340..842 165 22.4 Plus