LD47843.complete Sequence
3022 bp (3022 high quality bases) assembled on 2001-09-19
GenBank Submission: AY058732
> LD47843.complete
ACCAGTTGATTGTCGCTATTTTGACGGAAATATTTTAAGTATGCACACAA
ATTTACCGCGAAACCAGGTGTTTTTGTACAACAATTGTTCAAAGTTAAAG
AAAACTAAAAAACACGGGTAGAAGGTTGCAACAATTAATACAGGAAAATT
ACAAAATTCCAAGGTTTGTTTGGATGTAAAGTAATGGTCTTGGTGTGCAA
TGAGTGGTTAAAAAATAATGTTGATGAAGACCAGACGTCAAGTTCATTAT
CGCCGACGCCAGCATCAGGAGCAGTCGGATCAACGGCATTAAACAGAACT
GGCACAACCGACACGGCCACGGAATTACCTCAGACGACCAGATATCCATC
CGGGGAAGAACCTGCTGTGAAGCCAGAGGAGGCGCAATACGCTTTAAACA
TGGAAACTGAAAAAAATTTGGAGCAGGACAATTTCTTTCATATAATGGAC
ATAAAAGAAGATATGGCTGATAGTAACAACGAGGCGTCCACGAAGAACCA
GGAAAATAATAATATGGAACTTTGTGATTCCAACACAGTATGTATTGACC
GACGTCCGGCTGAAGTTTCCCAGCATGCTATGAATATGGCCATGAACTCT
GTGCTGAATGCAAATAACACCGGGGTTGGAGTTCGAGTAACTACTGCCTG
CAGTCTGTTTAGCCCACTAGGAGTACTAAACAATAGTGCTTTACAAAGGG
AGGTGGCATCGGAATGCGGCACTTTACAAGTCTCTTCAGTGCCCCCAACT
TCTGGCGTAGATCTAGACATAGGATTGGAGTCTGCCCCAACGCCATGTAA
GGGTGCAGCAAAAATCGTACTCCTATGTGAACCAAAGTCGCACAAGTTTG
AAACGAGATCTATATTGCTGCAGCCCAACCAGGATTGCAAGGTGGGCCGC
CTTATAGCTAAAAGTAAGGCGGGTGAGGGGAACGCTATATTTGACTGTAA
AGTATTGTCAAGAAACCATGCGATTTTGTGGTACACTCCAGACGGTAAAT
TCTGGGTCAAAGACACAAAATCCAGCAACGGTACCTTTATTAACGACAAC
AAGTTGGGTAGTGATCCAGCGGAACTACATTATGGCGATATTGTGAAGTT
CGGCGTTGAGGTAATTGAGAATTCACGTCAGGAGGTACACGGGTGTATCC
TGGCCCGTGTCGCCCTCTTTCTACCCAATGGACAAGAGGCCATTTCAGTT
GAGGCAGAGCAGATGATGTTGACTGTGCCTAACCGAATCAGCTTTGATGA
AGTGCAGCGCCTAAGCTCGTTCCTCCAAGAGGCTGCACAAAGGGAAAAAT
CTCTGAAAGCTAAATTAAGCAGCTTGCAAGGCGTCCTTGATAACACCAGA
AAGAACTCTGCGATGTGTTGGCAAAGCATGATCACTGAAGACCAATTGCT
TCACAAGATAAATATTCTGGAAAAGAAACTGCAAATGATGGAAAAGAACA
TTCCAGAGAATGCACTGCGAAACGAGATTGTAAAGCTTCTTGAGGACAAA
ACAACGTACCAGTTGACTGCCAAAGAGGCCCTGCGGAAGGTCTACCAGGA
ACGCTGCGATGCTATGCAAATGCTCTCTAAGATGGAGATGGCCTACGCCA
CTTCTGAAAACGAGTGCGGCATACTTCGCGCTCAAGTTCTAACACTAAAG
CAGACGCTGACTGATTTCAATACCCGGTTAGAGGAACTTCAGCAGGAGTA
CATGGAATTCAAGAAGGAGTCAGTGCGCCAAGAACAAGAGGCTAAAGAGC
AAGAATCACGCAGCTTAGAGGTGCTAAATGGAAAGCTGACGACGCAGGAG
CTCGAGCTTAAGGAGCTTCGTCTGCAGGTCTCGCGAATCCATCGCGATTT
ATCTGAGTCTGATACTGAACATTTGAAGGAGCGAATTGTCTTAAAAAACT
TAGATACAATAAATCTTGACGATTATGACCACGCTCAAGATAGAGCGCTA
AATGAAAGGGATGATAATGAAAGTTCTGACGATGATATTTTGTCTGTGTC
ACCAGCTAAAAATGTGTTGTCTGAAACGAAAAAAAGGAAGCTAAAACTAA
GTAATCCCGATTTAGAAGAAGGCAATTATAAATCGAACGTCTTAAGATTG
CTAAAGAACTCCGATCTTGGCAAGGGAGAAGAAGGATCTTCAGTGCTTAA
AGCTATTTTTAATGGTGACGATGAAGCCTTTGAATGCAAAGTTAAGGAGG
AGGAGGATATGGCAAACGATTCAGTTCCAACAGAGTTCGTTAGCAGAAAT
ACATCCGAAATCGTGGATCACTTTAAAAACCATTCTTCAACTACACATAC
AATTTTAGAGGATTCGGCTGCAACGAAATTGTCAGCCCCTAATGCGGAAA
GTAAGGAAAAGCTTGTAGACGTTGAGGAAAATCTTAATATTCCAAATGCA
TTACCGACGGAGCAGGCAATTGATATGTTACAAGAGGAATGTGATACGTA
CAAGAAAAAAACAGCTCATTTAACAAGTGAAATACACTTCCTGCAAGGAC
AAATTGAGCTATTAAAGAAGCAGCTTGAGAAAGGCGTTGATCACAATTTT
GCAACAAACTTGCAGGAAGAGGAAAACAGTTTACCGCGTGAGACGTTAGA
GCTAATTGATAATCGAGATAGCACAGAAGGTGTTTGGAATGAGGACATTG
CAACCATTAATAACCCCAACGTAGAAAATGAAGAAGAACTAATTGTTTAC
AAAGAGCTTCTTGAAAATTCGGAGCTTAACAACATGCAGCTTCGCAAAGA
AATCTCTGAGCTGCACTTAAAGCATAAACACATCCCATTTAGTAAACAAG
AGTTACTATGCCGCTTTCTACCTCTTGGCTGTGTTGCCATCGGCCTGCTC
ATATATTTTCTTTCCAGTCGAATTTAAGCGCCATTCTTTTAGCTAATGAG
GAAAACTCGCGCATTAAAAGCTTTTATCTACACACTATTAGTGTACACTG
GGATGACAGCATATTTAGTTAATGCTTGCGTTGTCGTCAAGCTTTATTAA
AAAAAAAAAAAAAAAAAAAAAA
LD47843.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 20:16:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17494.d | 3786 | CG17494.d | 41..3041 | 1..3001 | 15005 | 100 | Plus |
CG17494-RA | 3510 | CG17494-RA | 41..3041 | 1..3001 | 15005 | 100 | Plus |
CG17494.b | 3452 | CG17494.b | 41..3038 | 1..3001 | 14935 | 99.9 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:09:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2L | 23010047 | chr2L | 22471038..22472353 | 161..1476 | 6550 | 99.8 | Plus |
chr2L | 23010047 | chr2L | 22475961..22476922 | 2037..2998 | 4780 | 99.8 | Plus |
chr2L | 23010047 | chr2L | 22475340..22475902 | 1475..2037 | 2815 | 100 | Plus |
chr2L | 23010047 | chr2L | 22470310..22470474 | 1..165 | 810 | 99.4 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:45:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:09:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22579818..22581133 | 161..1476 | 6580 | 100 | Plus |
2L | 23513712 | 2L | 22584741..22585705 | 2037..3001 | 4825 | 100 | Plus |
2L | 23513712 | 2L | 22584120..22584682 | 1475..2037 | 2815 | 100 | Plus |
2L | 23513712 | 2L | 22579090..22579254 | 1..165 | 825 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:40:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22579818..22581133 | 161..1476 | 6580 | 100 | Plus |
2L | 23513712 | 2L | 22584741..22585705 | 2037..3001 | 4825 | 100 | Plus |
2L | 23513712 | 2L | 22584120..22584682 | 1475..2037 | 2815 | 100 | Plus |
2L | 23513712 | 2L | 22579090..22579254 | 1..165 | 825 | 100 | Plus |
Blast to na_te.dros performed on 2019-03-16 06:09:04 has no hits.
LD47843.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:09:53 Download gff for
LD47843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2L | 22470310..22470472 | 1..163 | 99 | -> | Plus |
chr2L | 22471041..22472353 | 164..1476 | 99 | -> | Plus |
chr2L | 22475342..22475902 | 1477..2037 | 100 | -> | Plus |
chr2L | 22475962..22476922 | 2038..2998 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:32:16 Download gff for
LD47843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17494-RB | 68..2784 | 161..2877 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:58:36 Download gff for
LD47843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17494-RD | 1..2694 | 184..2877 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:15:53 Download gff for
LD47843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17494-RA | 1..2694 | 184..2877 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:28:27 Download gff for
LD47843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17494-RB | 68..2784 | 161..2877 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:16:08 Download gff for
LD47843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Slmap-RA | 1..2694 | 184..2877 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:45:28 Download gff for
LD47843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17494-RA | 27..3024 | 1..2998 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:58:36 Download gff for
LD47843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17494-RA | 27..3024 | 1..2998 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:15:53 Download gff for
LD47843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17494-RA | 19..3016 | 1..2998 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:28:28 Download gff for
LD47843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17494-RA | 27..3024 | 1..2998 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:16:08 Download gff for
LD47843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Slmap-RA | 19..3016 | 1..2998 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:09:53 Download gff for
LD47843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22579090..22579252 | 1..163 | 100 | -> | Plus |
2L | 22579821..22581133 | 164..1476 | 100 | -> | Plus |
2L | 22584122..22584682 | 1477..2037 | 100 | -> | Plus |
2L | 22584742..22585702 | 2038..2998 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:09:53 Download gff for
LD47843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22579090..22579252 | 1..163 | 100 | -> | Plus |
2L | 22579821..22581133 | 164..1476 | 100 | -> | Plus |
2L | 22584122..22584682 | 1477..2037 | 100 | -> | Plus |
2L | 22584742..22585702 | 2038..2998 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:09:53 Download gff for
LD47843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22579090..22579252 | 1..163 | 100 | -> | Plus |
2L | 22579821..22581133 | 164..1476 | 100 | -> | Plus |
2L | 22584122..22584682 | 1477..2037 | 100 | -> | Plus |
2L | 22584742..22585702 | 2038..2998 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:15:53 Download gff for
LD47843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22471822..22471984 | 1..163 | 100 | -> | Plus |
arm_2L | 22472553..22473865 | 164..1476 | 100 | -> | Plus |
arm_2L | 22476854..22477414 | 1477..2037 | 100 | -> | Plus |
arm_2L | 22477474..22478434 | 2038..2998 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:05:14 Download gff for
LD47843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22579821..22581133 | 164..1476 | 100 | -> | Plus |
2L | 22584122..22584682 | 1477..2037 | 100 | -> | Plus |
2L | 22584742..22585702 | 2038..2998 | 100 | | Plus |
2L | 22579090..22579252 | 1..163 | 100 | -> | Plus |
LD47843.pep Sequence
Translation from 183 to 2876
> LD47843.pep
MVLVCNEWLKNNVDEDQTSSSLSPTPASGAVGSTALNRTGTTDTATELPQ
TTRYPSGEEPAVKPEEAQYALNMETEKNLEQDNFFHIMDIKEDMADSNNE
ASTKNQENNNMELCDSNTVCIDRRPAEVSQHAMNMAMNSVLNANNTGVGV
RVTTACSLFSPLGVLNNSALQREVASECGTLQVSSVPPTSGVDLDIGLES
APTPCKGAAKIVLLCEPKSHKFETRSILLQPNQDCKVGRLIAKSKAGEGN
AIFDCKVLSRNHAILWYTPDGKFWVKDTKSSNGTFINDNKLGSDPAELHY
GDIVKFGVEVIENSRQEVHGCILARVALFLPNGQEAISVEAEQMMLTVPN
RISFDEVQRLSSFLQEAAQREKSLKAKLSSLQGVLDNTRKNSAMCWQSMI
TEDQLLHKINILEKKLQMMEKNIPENALRNEIVKLLEDKTTYQLTAKEAL
RKVYQERCDAMQMLSKMEMAYATSENECGILRAQVLTLKQTLTDFNTRLE
ELQQEYMEFKKESVRQEQEAKEQESRSLEVLNGKLTTQELELKELRLQVS
RIHRDLSESDTEHLKERIVLKNLDTINLDDYDHAQDRALNERDDNESSDD
DILSVSPAKNVLSETKKRKLKLSNPDLEEGNYKSNVLRLLKNSDLGKGEE
GSSVLKAIFNGDDEAFECKVKEEEDMANDSVPTEFVSRNTSEIVDHFKNH
SSTTHTILEDSAATKLSAPNAESKEKLVDVEENLNIPNALPTEQAIDMLQ
EECDTYKKKTAHLTSEIHFLQGQIELLKKQLEKGVDHNFATNLQEEENSL
PRETLELIDNRDSTEGVWNEDIATINNPNVENEEELIVYKELLENSELNN
MQLRKEISELHLKHKHIPFSKQELLCRFLPLGCVAIGLLIYFLSSRI*
LD47843.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:17:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF22729-PA | 962 | GF22729-PA | 1..445 | 1..442 | 1308 | 59.3 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:17:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG21402-PA | 497 | GG21402-PA | 1..493 | 94..586 | 2333 | 88.8 | Plus |
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:17:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dgri\GH13626-PA | 895 | GH13626-PA | 66..503 | 114..564 | 1523 | 67.6 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:46:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Slmap-PD | 897 | CG17494-PD | 1..897 | 1..897 | 4577 | 100 | Plus |
Slmap-PA | 897 | CG17494-PA | 1..897 | 1..897 | 4577 | 100 | Plus |
zip-PH | 1964 | CG15792-PH | 925..1452 | 340..842 | 165 | 22.4 | Plus |
zip-PG | 1971 | CG15792-PG | 917..1444 | 340..842 | 165 | 22.4 | Plus |
zip-PE | 1971 | CG15792-PE | 917..1444 | 340..842 | 165 | 22.4 | Plus |
zip-PC | 1971 | CG15792-PC | 917..1444 | 340..842 | 165 | 22.4 | Plus |
zip-PF | 1979 | CG15792-PF | 925..1452 | 340..842 | 165 | 22.4 | Plus |
zip-PB | 2011 | CG15792-PB | 957..1484 | 340..842 | 165 | 22.4 | Plus |
zip-PD | 2016 | CG15792-PD | 962..1489 | 340..842 | 165 | 22.4 | Plus |
zip-PI | 2024 | CG15792-PI | 970..1497 | 340..842 | 165 | 22.4 | Plus |
zip-PA | 2056 | CG15792-PA | 1002..1529 | 340..842 | 165 | 22.4 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:17:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI11737-PA | 869 | GI11737-PA | 274..451 | 365..542 | 723 | 77 | Plus |
Dmoj\GI11737-PA | 869 | GI11737-PA | 168..307 | 105..268 | 212 | 37.1 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:17:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL21139-PA | 967 | GL21139-PA | 1..967 | 1..897 | 2164 | 52 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:17:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA29082-PA | 967 | GA29082-PA | 1..967 | 1..897 | 2073 | 51.8 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:17:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM26733-PA | 889 | GM26733-PA | 1..889 | 1..897 | 4321 | 91.8 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:17:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ13103-PA | 873 | GJ13103-PA | 607..873 | 633..897 | 345 | 38.4 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:17:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK23714-PA | 886 | GK23714-PA | 127..886 | 158..897 | 1887 | 54.2 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:17:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE22680-PA | 901 | GE22680-PA | 1..901 | 1..897 | 3770 | 80.8 | Plus |
LD47843.hyp Sequence
Translation from 183 to 2876
> LD47843.hyp
MVLVCNEWLKNNVDEDQTSSSLSPTPASGAVGSTALNRTGTTDTATELPQ
TTRYPSGEEPAVKPEEAQYALNMETEKNLEQDNFFHIMDIKEDMADSNNE
ASTKNQENNNMELCDSNTVCIDRRPAEVSQHAMNMAMNSVLNANNTGVGV
RVTTACSLFSPLGVLNNSALQREVASECGTLQVSSVPPTSGVDLDIGLES
APTPCKGAAKIVLLCEPKSHKFETRSILLQPNQDCKVGRLIAKSKAGEGN
AIFDCKVLSRNHAILWYTPDGKFWVKDTKSSNGTFINDNKLGSDPAELHY
GDIVKFGVEVIENSRQEVHGCILARVALFLPNGQEAISVEAEQMMLTVPN
RISFDEVQRLSSFLQEAAQREKSLKAKLSSLQGVLDNTRKNSAMCWQSMI
TEDQLLHKINILEKKLQMMEKNIPENALRNEIVKLLEDKTTYQLTAKEAL
RKVYQERCDAMQMLSKMEMAYATSENECGILRAQVLTLKQTLTDFNTRLE
ELQQEYMEFKKESVRQEQEAKEQESRSLEVLNGKLTTQELELKELRLQVS
RIHRDLSESDTEHLKERIVLKNLDTINLDDYDHAQDRALNERDDNESSDD
DILSVSPAKNVLSETKKRKLKLSNPDLEEGNYKSNVLRLLKNSDLGKGEE
GSSVLKAIFNGDDEAFECKVKEEEDMANDSVPTEFVSRNTSEIVDHFKNH
SSTTHTILEDSAATKLSAPNAESKEKLVDVEENLNIPNALPTEQAIDMLQ
EECDTYKKKTAHLTSEIHFLQGQIELLKKQLEKGVDHNFATNLQEEENSL
PRETLELIDNRDSTEGVWNEDIATINNPNVENEEELIVYKELLENSELNN
MQLRKEISELHLKHKHIPFSKQELLCRFLPLGCVAIGLLIYFLSSRI*
LD47843.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:36:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Slmap-PD | 897 | CG17494-PD | 1..897 | 1..897 | 4577 | 100 | Plus |
Slmap-PA | 897 | CG17494-PA | 1..897 | 1..897 | 4577 | 100 | Plus |
zip-PH | 1964 | CG15792-PH | 925..1452 | 340..842 | 165 | 22.4 | Plus |
zip-PG | 1971 | CG15792-PG | 917..1444 | 340..842 | 165 | 22.4 | Plus |
zip-PE | 1971 | CG15792-PE | 917..1444 | 340..842 | 165 | 22.4 | Plus |