Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
LD47919.complete Sequence
1065 bp (1065 high quality bases) assembled on 2003-01-14
GenBank Submission: AY061524
> LD47919.complete
TCACAGTATCTAAAAAAAATGGAGAATTCTCGCACGCCCACGAACAAGAC
CAAAATTACGCTTAATCGCACGCCAACGCTAAAGGAGCGCAGATGGAACA
CCCTGAAGGTGAACACCTCCAACGTGCGATGCTCTACTCCGATCTTTGGC
AACTTCCGTTCGCCCAATCTCTCGCCCATCGAGAATATGGGCACGAAGGG
GAAGAGTCCAGTGTCGCCCATGCGGTTCGCTACCTTCAAGAAAGTGCCAA
CGAAGGTGCATCCCAAGCAGCAGCAGCAGCAGCAGCATCAGCACTGCCAT
CGCACTCAGCTTAAGCCCCCGCCATTCGTGCTGCCCAAGCCGCAGGAGGA
GATCATCGAGCCGGAGCGAGAAATAAAGAGCTGCAGCAGCCCGGATACCT
GTTCGGATGACTCGAATATGGAGACCTCACTGGCCTTGGAGTCGCGTCGT
CGTTCCATCAAAGCATCGAACCACTCGTACGTGGTTAACCATGCCGCCAA
TGTGGAACAGATTCTCATGCACATGGGCCTGGAGAACTATGTGACCAATT
TCGAAGAGGCTCACATCGATCTGGTGGAACTGGCATCCTTGGAGCGTGCT
GATCTTGTTAAAATCGGCCTAAATACCGATGAGGATTGCAACCGTATCAT
GGATGTGCTCCACACTCTTTAAGTGAATCGCTGGCATGTCCATCTTTTAT
CATACACTAAGATTTTAAAATGTTTTATGTGAAGAGAAACTTTGTGATTT
TAATATATGTGGATAATTAAGTAGGTATTCTAGAATTATTGTAAAAGACC
TGGTGTCTTAAAGCTCGTCGTTTTTAGCCTTAAATAATAAACTCTAGTAC
ACTTTAAGAATCTATGTAATTCCTAAAATGTTGCTCCGAAGCTCATTTAC
AAATTTAAATTTATTTCGTAAGCTAGCAAATTGCATAATACTTTTTGTCA
AAAAAAAAAAAAAAAATTGGGGTATAAACGCTTTTGTAAAACACACATTT
TTAAAATTAATAAACTCATAAGAATCAAATGCATATTAAAAGGTTACAAA
AAAAAAAAAAAAAAA
LD47919.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 18:26:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mtrm-RA | 1089 | mtrm-RA | 43..1089 | 1..1047 | 5235 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:32:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 8405062..8406100 | 1..1047 | 4975 | 98.6 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:45:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:32:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8413057..8414108 | 1..1052 | 5260 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:03:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 8406157..8407208 | 1..1052 | 5260 | 100 | Plus |
Blast to na_te.dros performed 2019-03-15 22:32:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 1885..1947 | 1041..980 | 123 | 68.3 | Minus |
gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 9767..9829 | 1041..980 | 123 | 68.3 | Minus |
LD47919.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:33:40 Download gff for
LD47919.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 8405062..8406100 | 1..1047 | 95 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:32:20 Download gff for
LD47919.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtrm-RA | 1..654 | 19..672 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:56:54 Download gff for
LD47919.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtrm-RA | 1..654 | 19..672 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:24:17 Download gff for
LD47919.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtrm-RA | 1..654 | 19..672 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:47:45 Download gff for
LD47919.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtrm-RA | 1..654 | 19..672 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:27:17 Download gff for
LD47919.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtrm-RA | 1..654 | 19..672 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:12:48 Download gff for
LD47919.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtrm-RA | 43..1089 | 1..1047 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:56:54 Download gff for
LD47919.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtrm-RA | 43..1089 | 1..1047 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:24:17 Download gff for
LD47919.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtrm-RA | 46..1092 | 1..1047 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:47:45 Download gff for
LD47919.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtrm-RA | 43..1089 | 1..1047 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:27:17 Download gff for
LD47919.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtrm-RA | 46..1092 | 1..1047 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:33:40 Download gff for
LD47919.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8413057..8414103 | 1..1047 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:33:40 Download gff for
LD47919.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8413057..8414103 | 1..1047 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:33:40 Download gff for
LD47919.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8413057..8414103 | 1..1047 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:24:17 Download gff for
LD47919.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8406157..8407203 | 1..1047 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:19:04 Download gff for
LD47919.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8406157..8407203 | 1..1047 | 100 | | Plus |
LD47919.hyp Sequence
Translation from 0 to 671
> LD47919.hyp
SQYLKKMENSRTPTNKTKITLNRTPTLKERRWNTLKVNTSNVRCSTPIFG
NFRSPNLSPIENMGTKGKSPVSPMRFATFKKVPTKVHPKQQQQQQHQHCH
RTQLKPPPFVLPKPQEEIIEPEREIKSCSSPDTCSDDSNMETSLALESRR
RSIKASNHSYVVNHAANVEQILMHMGLENYVTNFEEAHIDLVELASLERA
DLVKIGLNTDEDCNRIMDVLHTL*
LD47919.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:08:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mtrm-PA | 217 | CG18543-PA | 1..217 | 7..223 | 1143 | 100 | Plus |
LD47919.pep Sequence
Translation from 18 to 671
> LD47919.pep
MENSRTPTNKTKITLNRTPTLKERRWNTLKVNTSNVRCSTPIFGNFRSPN
LSPIENMGTKGKSPVSPMRFATFKKVPTKVHPKQQQQQQHQHCHRTQLKP
PPFVLPKPQEEIIEPEREIKSCSSPDTCSDDSNMETSLALESRRRSIKAS
NHSYVVNHAANVEQILMHMGLENYVTNFEEAHIDLVELASLERADLVKIG
LNTDEDCNRIMDVLHTL*
LD47919.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:23:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mtrm-PA | 217 | CG18543-PA | 1..217 | 1..217 | 1143 | 100 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:47:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL24705-PA | 203 | GL24705-PA | 1..203 | 1..217 | 528 | 58.5 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:47:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA23958-PA | 890 | GA23958-PA | 246..439 | 5..212 | 520 | 59.1 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:47:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM25054-PA | 906 | GM25054-PA | 247..455 | 1..212 | 1016 | 95.3 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:47:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ19117-PA | 188 | GJ19117-PA | 1..185 | 1..214 | 401 | 42.1 | Plus |
Dvir\GJ12974-PA | 861 | GJ12974-PA | 253..410 | 27..200 | 320 | 45.4 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:47:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK15529-PA | 186 | GK15529-PA | 14..179 | 7..199 | 353 | 45.6 | Plus |