BDGP Sequence Production Resources |
Search the DGRC for LD47962
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 479 |
Well: | 62 |
Vector: | pOT2 |
Associated Gene/Transcript | CG1970-RA |
Protein status: | LD47962.pep: gold |
Sequenced Size: | 1574 |
Gene | Date | Evidence |
---|---|---|
CG1970 | 2008-04-29 | Picked prior to 5.5 |
CG1970 | 2008-08-15 | Release 5.9 accounting |
CG1970 | 2008-12-18 | 5.12 accounting |
1574 bp assembled on 2008-05-14
GenBank Submission: BT032847
> LD47962.complete ATAACTATTTGGTTGTATTAGATTCCTGAATTGTTACTAAAGAAACATAA ATAGAGGAATTTGACTATCAGGATGGCCAATATAATGAGAAGAACGTTGA TTCCTGGACTTTCACACTTGAGGCTGCGGCCACAACTTGTTGCAGCTGGA TCGGCCGCGTTAACTTCTCAGGAGACGCGACGGGGAGCAGCCAAGTGGTA TCCAGACCCTGAGTTCATGAAGCAGTTTAGCGGCCCGGTGATGTATCCAG ACGAGGTCACATCACTTTGGACAGTGCCACCATGGAACAGCAAAGTAACG CCTGTCGAAAAGTCGGTGCGTAATCTGACCTTGAACTTCGGCCCACAACA TCCCGCCGCCCACGGAGTCCTTCGTCTTGTGCTGGAGCTGGATGGAGAGA CCGTTATGCGTGCCGATCCGCATATTGGGCTGCTGCACCGTGGGACCGAA AAGCTCATAGAGTACAAGACATACACCCAGGCATTGCCGTATTTTGACCG GCTGGACTACGTCTCGATGATGTGCAACGAGCAATGCTACTCTCTGGCTG TAGAAAAACTCCTTAATATTGATGTGCCTCTCCGTGCTAAGTACATTCGA ACTCTCTTTGCCGAGATTACTCGTATTCTCAATCACATTATGGCCGTCGG AACACATGCCTTAGATGTTGGTGCTCTAACGCCATTTTTTTGGCTATTCG AGGAGCGAGAGAAAATGATGGAATTCTATGAGCGAGTTTCTGGTGCCCGA ATGCATGCTGCCTACATACGTCCTGGCGGGGTGTCATTGGATATGCCTCT TGGTCTTATGGACGATATCTATGAGTTTGCATCAAAGTTTGCTGAGCGGT TGGACGAAGTGGAGGATGTGTTAACTACAAATCGAATCTGGGTGCAGCGG ACCGAGGACATTGGGATCGTAACTGCAGAAGAAGCTTTGAACTATGGCTT CAGTGGAGTTATGTTGCGTGGATCTGGCATAAAATGGGATCTTCGAAAGC AGCAGCCGTACGATGCCTATAATTTGGTAAACTTTGATGTTCCCATCGGC ACCAAAGGGGACTGCTACGACCGATATCTTTGCCGGGTCGAGGAAATGCG CCAGTCATTACGAATTATTGATCAATGCCTAAACCAAATGCCTGCTGGAG AAATTAAAACGGATGATGCCAAGGTGGCGCCTCCGTCACGGTCCGAAATG AAGACATCCATGGAGGCACTTATTCACCACTTCAAGTTATTTACCCAAGG ATATCAAGTTCCACCCGGGGCAACATACACGGCAATAGAGGCTCCGAAGG GCGAGTTTGGAGTTTACCTTATATCAGATGGGTCCAGTCGTCCATACCGG TGCAAAATCAAAGCTCCAGGGTTTGCTCACTTGGCAGCTTTAGAGAAGAT TGGAAAGCAGCACATGCTAGCCGACGTCGTTGCAATAATTGGAACTTTGG ATGTCGTATTTGGGGAGATAGACCGTTAGTTGTTTTTAGAGAATGTGTGT CTTCTCTGTACGAAACTGCTTAAATATATAAATATAAATACGTTCAAAAT AAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr4 | 1351717 | chr4 | 588845..589606 | 1550..789 | 3795 | 99.9 | Minus |
chr4 | 1351717 | chr4 | 590524..590727 | 601..398 | 1020 | 100 | Minus |
chr4 | 1351717 | chr4 | 589662..589850 | 790..602 | 945 | 100 | Minus |
chr4 | 1351717 | chr4 | 591153..591316 | 164..1 | 820 | 100 | Minus |
chr4 | 1351717 | chr4 | 590957..591082 | 290..165 | 630 | 100 | Minus |
chr4 | 1351717 | chr4 | 590783..590892 | 399..290 | 550 | 100 | Minus |
chr3R | 27901430 | chr3R | 21181905..21182065 | 349..509 | 265 | 77.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
4 | 1348131 | 4 | 568288..569057 | 1558..789 | 3835 | 99.9 | Minus |
4 | 1348131 | 4 | 569975..570178 | 601..398 | 1020 | 100 | Minus |
4 | 1348131 | 4 | 569113..569301 | 790..602 | 945 | 100 | Minus |
4 | 1348131 | 4 | 570604..570767 | 164..1 | 820 | 100 | Minus |
4 | 1348131 | 4 | 570408..570533 | 290..165 | 630 | 100 | Minus |
4 | 1348131 | 4 | 570234..570343 | 399..290 | 550 | 100 | Minus |
3R | 32079331 | 3R | 25358799..25358959 | 349..509 | 250 | 77 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
4 | 1331231 | 4 | 568288..569057 | 1558..789 | 3835 | 99.8 | Minus |
4 | 1331231 | 4 | 569975..570178 | 601..398 | 1020 | 100 | Minus |
4 | 1331231 | 4 | 569113..569301 | 790..602 | 945 | 100 | Minus |
4 | 1331231 | 4 | 570604..570767 | 164..1 | 820 | 100 | Minus |
4 | 1331231 | 4 | 570408..570533 | 290..165 | 630 | 100 | Minus |
4 | 1331231 | 4 | 570234..570343 | 399..290 | 550 | 100 | Minus |
3R | 31820162 | 3R | 25099630..25099790 | 349..509 | 250 | 77 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr4 | 588878..589605 | 790..1517 | 99 | <- | Minus |
chr4 | 589663..589850 | 602..789 | 100 | <- | Minus |
chr4 | 590524..590725 | 400..601 | 100 | <- | Minus |
chr4 | 590783..590892 | 290..399 | 100 | <- | Minus |
chr4 | 590958..591082 | 165..289 | 100 | <- | Minus |
chr4 | 591153..591316 | 1..164 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1970-RA | 1..1407 | 73..1479 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1970-RA | 1..1407 | 73..1479 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1970-RA | 1..1407 | 73..1479 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1970-RA | 1..1407 | 73..1479 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1970-RA | 1..1407 | 73..1479 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1970-RA | 28..1577 | 1..1550 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1970-RA | 28..1577 | 1..1550 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1970-RA | 24..1573 | 1..1550 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1970-RA | 28..1577 | 1..1550 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1970-RA | 24..1573 | 1..1550 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
4 | 570409..570533 | 165..289 | 100 | <- | Minus |
4 | 570604..570767 | 1..164 | 100 | Minus | |
4 | 569975..570176 | 400..601 | 100 | <- | Minus |
4 | 570234..570343 | 290..399 | 100 | <- | Minus |
4 | 568296..569056 | 790..1550 | 100 | <- | Minus |
4 | 569114..569301 | 602..789 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
4 | 570409..570533 | 165..289 | 100 | <- | Minus |
4 | 570604..570767 | 1..164 | 100 | Minus | |
4 | 569975..570176 | 400..601 | 100 | <- | Minus |
4 | 570234..570343 | 290..399 | 100 | <- | Minus |
4 | 568296..569056 | 790..1550 | 100 | <- | Minus |
4 | 569114..569301 | 602..789 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
4 | 570409..570533 | 165..289 | 100 | <- | Minus |
4 | 570604..570767 | 1..164 | 100 | Minus | |
4 | 569975..570176 | 400..601 | 100 | <- | Minus |
4 | 570234..570343 | 290..399 | 100 | <- | Minus |
4 | 568296..569056 | 790..1550 | 100 | <- | Minus |
4 | 569114..569301 | 602..789 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_4 | 589740..589927 | 602..789 | 100 | <- | Minus |
arm_4 | 590601..590802 | 400..601 | 100 | <- | Minus |
arm_4 | 590860..590969 | 290..399 | 100 | <- | Minus |
arm_4 | 591035..591159 | 165..289 | 100 | <- | Minus |
arm_4 | 591230..591393 | 1..164 | 100 | Minus | |
arm_4 | 588922..589682 | 790..1550 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
4 | 568296..569056 | 790..1550 | 100 | <- | Minus |
4 | 569114..569301 | 602..789 | 100 | <- | Minus |
4 | 569975..570176 | 400..601 | 100 | <- | Minus |
4 | 570234..570343 | 290..399 | 100 | <- | Minus |
4 | 570409..570533 | 165..289 | 100 | <- | Minus |
4 | 570604..570767 | 1..164 | 100 | Minus |
Translation from 72 to 1478
> LD47962.pep MANIMRRTLIPGLSHLRLRPQLVAAGSAALTSQETRRGAAKWYPDPEFMK QFSGPVMYPDEVTSLWTVPPWNSKVTPVEKSVRNLTLNFGPQHPAAHGVL RLVLELDGETVMRADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM CNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRILNHIMAVGTHALDVG ALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIY EFASKFAERLDEVEDVLTTNRIWVQRTEDIGIVTAEEALNYGFSGVMLRG SGIKWDLRKQQPYDAYNLVNFDVPIGTKGDCYDRYLCRVEEMRQSLRIID QCLNQMPAGEIKTDDAKVAPPSRSEMKTSMEALIHHFKLFTQGYQVPPGA TYTAIEAPKGEFGVYLISDGSSRPYRCKIKAPGFAHLAALEKIGKQHMLA DVVAIIGTLDVVFGEIDR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF19015-PA | 470 | GF19015-PA | 3..470 | 1..468 | 2310 | 91.2 | Plus |
Dana\GF16933-PA | 519 | GF16933-PA | 93..519 | 42..468 | 1551 | 65.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16443-PA | 468 | GG16443-PA | 1..468 | 1..468 | 2498 | 98.9 | Plus |
Dere\GG11402-PA | 523 | GG11402-PA | 92..523 | 37..468 | 1574 | 65.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH23924-PA | 469 | GH23924-PA | 1..469 | 1..468 | 2314 | 90.8 | Plus |
Dgri\GH18233-PA | 529 | GH18233-PA | 98..529 | 37..468 | 1585 | 67.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ND-49-PB | 468 | CG1970-PB | 1..468 | 1..468 | 2454 | 100 | Plus |
ND-49-PA | 468 | CG1970-PA | 1..468 | 1..468 | 2454 | 100 | Plus |
ND-49L-PB | 523 | CG11913-PB | 97..523 | 42..468 | 1537 | 65.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14091-PA | 449 | GI14091-PA | 12..449 | 31..468 | 2289 | 96.1 | Plus |
Dmoj\GI10189-PA | 478 | GI10189-PA | 47..478 | 37..468 | 1589 | 67.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18172-PA | 452 | GL18172-PA | 1..452 | 17..468 | 2343 | 95.1 | Plus |
Dper\GL12099-PA | 495 | GL12099-PA | 64..495 | 37..468 | 1566 | 65.7 | Plus |
Dper\GL16671-PA | 127 | GL16671-PA | 4..123 | 2..118 | 446 | 70 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA25154-PA | 440 | GA25154-PA | 4..440 | 32..468 | 2309 | 96.8 | Plus |
Dpse\GA11278-PA | 517 | GA11278-PA | 86..517 | 37..468 | 1558 | 65.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26777-PA | 468 | GM26777-PA | 1..468 | 1..468 | 2491 | 98.5 | Plus |
Dsec\GM17844-PA | 502 | GM17844-PA | 76..502 | 42..468 | 1571 | 65.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21215-PA | 194 | GD21215-PA | 2..194 | 276..468 | 727 | 64.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13840-PA | 468 | GJ13840-PA | 6..468 | 5..468 | 2312 | 91.6 | Plus |
Dvir\GJ23477-PA | 501 | GJ23477-PA | 70..501 | 37..468 | 1566 | 66.4 | Plus |
Translation from 72 to 1478
> LD47962.hyp MANIMRRTLIPGLSHLRLRPQLVAAGSAALTSQETRRGAAKWYPDPEFMK QFSGPVMYPDEVTSLWTVPPWNSKVTPVEKSVRNLTLNFGPQHPAAHGVL RLVLELDGETVMRADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM CNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRILNHIMAVGTHALDVG ALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIY EFASKFAERLDEVEDVLTTNRIWVQRTEDIGIVTAEEALNYGFSGVMLRG SGIKWDLRKQQPYDAYNLVNFDVPIGTKGDCYDRYLCRVEEMRQSLRIID QCLNQMPAGEIKTDDAKVAPPSRSEMKTSMEALIHHFKLFTQGYQVPPGA TYTAIEAPKGEFGVYLISDGSSRPYRCKIKAPGFAHLAALEKIGKQHMLA DVVAIIGTLDVVFGEIDR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG1970-PB | 468 | CG1970-PB | 1..468 | 1..468 | 2454 | 100 | Plus |
CG1970-PA | 468 | CG1970-PA | 1..468 | 1..468 | 2454 | 100 | Plus |
CG11913-PB | 523 | CG11913-PB | 97..523 | 42..468 | 1537 | 65.5 | Plus |