Clone LD47962 Report

Search the DGRC for LD47962

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:479
Well:62
Vector:pOT2
Associated Gene/TranscriptCG1970-RA
Protein status:LD47962.pep: gold
Sequenced Size:1574

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1970 2008-04-29 Picked prior to 5.5
CG1970 2008-08-15 Release 5.9 accounting
CG1970 2008-12-18 5.12 accounting

Clone Sequence Records

LD47962.complete Sequence

1574 bp assembled on 2008-05-14

GenBank Submission: BT032847

> LD47962.complete
ATAACTATTTGGTTGTATTAGATTCCTGAATTGTTACTAAAGAAACATAA
ATAGAGGAATTTGACTATCAGGATGGCCAATATAATGAGAAGAACGTTGA
TTCCTGGACTTTCACACTTGAGGCTGCGGCCACAACTTGTTGCAGCTGGA
TCGGCCGCGTTAACTTCTCAGGAGACGCGACGGGGAGCAGCCAAGTGGTA
TCCAGACCCTGAGTTCATGAAGCAGTTTAGCGGCCCGGTGATGTATCCAG
ACGAGGTCACATCACTTTGGACAGTGCCACCATGGAACAGCAAAGTAACG
CCTGTCGAAAAGTCGGTGCGTAATCTGACCTTGAACTTCGGCCCACAACA
TCCCGCCGCCCACGGAGTCCTTCGTCTTGTGCTGGAGCTGGATGGAGAGA
CCGTTATGCGTGCCGATCCGCATATTGGGCTGCTGCACCGTGGGACCGAA
AAGCTCATAGAGTACAAGACATACACCCAGGCATTGCCGTATTTTGACCG
GCTGGACTACGTCTCGATGATGTGCAACGAGCAATGCTACTCTCTGGCTG
TAGAAAAACTCCTTAATATTGATGTGCCTCTCCGTGCTAAGTACATTCGA
ACTCTCTTTGCCGAGATTACTCGTATTCTCAATCACATTATGGCCGTCGG
AACACATGCCTTAGATGTTGGTGCTCTAACGCCATTTTTTTGGCTATTCG
AGGAGCGAGAGAAAATGATGGAATTCTATGAGCGAGTTTCTGGTGCCCGA
ATGCATGCTGCCTACATACGTCCTGGCGGGGTGTCATTGGATATGCCTCT
TGGTCTTATGGACGATATCTATGAGTTTGCATCAAAGTTTGCTGAGCGGT
TGGACGAAGTGGAGGATGTGTTAACTACAAATCGAATCTGGGTGCAGCGG
ACCGAGGACATTGGGATCGTAACTGCAGAAGAAGCTTTGAACTATGGCTT
CAGTGGAGTTATGTTGCGTGGATCTGGCATAAAATGGGATCTTCGAAAGC
AGCAGCCGTACGATGCCTATAATTTGGTAAACTTTGATGTTCCCATCGGC
ACCAAAGGGGACTGCTACGACCGATATCTTTGCCGGGTCGAGGAAATGCG
CCAGTCATTACGAATTATTGATCAATGCCTAAACCAAATGCCTGCTGGAG
AAATTAAAACGGATGATGCCAAGGTGGCGCCTCCGTCACGGTCCGAAATG
AAGACATCCATGGAGGCACTTATTCACCACTTCAAGTTATTTACCCAAGG
ATATCAAGTTCCACCCGGGGCAACATACACGGCAATAGAGGCTCCGAAGG
GCGAGTTTGGAGTTTACCTTATATCAGATGGGTCCAGTCGTCCATACCGG
TGCAAAATCAAAGCTCCAGGGTTTGCTCACTTGGCAGCTTTAGAGAAGAT
TGGAAAGCAGCACATGCTAGCCGACGTCGTTGCAATAATTGGAACTTTGG
ATGTCGTATTTGGGGAGATAGACCGTTAGTTGTTTTTAGAGAATGTGTGT
CTTCTCTGTACGAAACTGCTTAAATATATAAATATAAATACGTTCAAAAT
AAAAAAAAAAAAAAAAAAAAAAAA

LD47962.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:59:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG1970-RA 1663 CG1970-RA 104..1661 1..1558 7775 99.9 Plus
CG11913-RB 1865 CG11913-RB 551..711 349..509 250 77 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:17:14
Subject Length Description Subject Range Query Range Score Percent Strand
chr4 1351717 chr4 588845..589606 1550..789 3795 99.9 Minus
chr4 1351717 chr4 590524..590727 601..398 1020 100 Minus
chr4 1351717 chr4 589662..589850 790..602 945 100 Minus
chr4 1351717 chr4 591153..591316 164..1 820 100 Minus
chr4 1351717 chr4 590957..591082 290..165 630 100 Minus
chr4 1351717 chr4 590783..590892 399..290 550 100 Minus
chr3R 27901430 chr3R 21181905..21182065 349..509 265 77.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:45:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:17:11
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 568288..569057 1558..789 3835 99.9 Minus
4 1348131 4 569975..570178 601..398 1020 100 Minus
4 1348131 4 569113..569301 790..602 945 100 Minus
4 1348131 4 570604..570767 164..1 820 100 Minus
4 1348131 4 570408..570533 290..165 630 100 Minus
4 1348131 4 570234..570343 399..290 550 100 Minus
3R 32079331 3R 25358799..25358959 349..509 250 77 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:55:49
Subject Length Description Subject Range Query Range Score Percent Strand
4 1331231 4 568288..569057 1558..789 3835 99.8 Minus
4 1331231 4 569975..570178 601..398 1020 100 Minus
4 1331231 4 569113..569301 790..602 945 100 Minus
4 1331231 4 570604..570767 164..1 820 100 Minus
4 1331231 4 570408..570533 290..165 630 100 Minus
4 1331231 4 570234..570343 399..290 550 100 Minus
3R 31820162 3R 25099630..25099790 349..509 250 77 Plus
Blast to na_te.dros performed on 2019-03-16 01:17:12 has no hits.

LD47962.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:18:24 Download gff for LD47962.complete
Subject Subject Range Query Range Percent Splice Strand
chr4 588878..589605 790..1517 99 <- Minus
chr4 589663..589850 602..789 100 <- Minus
chr4 590524..590725 400..601 100 <- Minus
chr4 590783..590892 290..399 100 <- Minus
chr4 590958..591082 165..289 100 <- Minus
chr4 591153..591316 1..164 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:32:26 Download gff for LD47962.complete
Subject Subject Range Query Range Percent Splice Strand
CG1970-RA 1..1407 73..1479 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:55:18 Download gff for LD47962.complete
Subject Subject Range Query Range Percent Splice Strand
CG1970-RA 1..1407 73..1479 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:04:25 Download gff for LD47962.complete
Subject Subject Range Query Range Percent Splice Strand
CG1970-RA 1..1407 73..1479 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:54:25 Download gff for LD47962.complete
Subject Subject Range Query Range Percent Splice Strand
CG1970-RA 1..1407 73..1479 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:29:44 Download gff for LD47962.complete
Subject Subject Range Query Range Percent Splice Strand
CG1970-RA 1..1407 73..1479 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:19:11 Download gff for LD47962.complete
Subject Subject Range Query Range Percent Splice Strand
CG1970-RA 28..1577 1..1550 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:55:18 Download gff for LD47962.complete
Subject Subject Range Query Range Percent Splice Strand
CG1970-RA 28..1577 1..1550 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:04:25 Download gff for LD47962.complete
Subject Subject Range Query Range Percent Splice Strand
CG1970-RA 24..1573 1..1550 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:54:25 Download gff for LD47962.complete
Subject Subject Range Query Range Percent Splice Strand
CG1970-RA 28..1577 1..1550 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:29:44 Download gff for LD47962.complete
Subject Subject Range Query Range Percent Splice Strand
CG1970-RA 24..1573 1..1550 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:18:24 Download gff for LD47962.complete
Subject Subject Range Query Range Percent Splice Strand
4 570409..570533 165..289 100 <- Minus
4 570604..570767 1..164 100   Minus
4 569975..570176 400..601 100 <- Minus
4 570234..570343 290..399 100 <- Minus
4 568296..569056 790..1550 100 <- Minus
4 569114..569301 602..789 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:18:24 Download gff for LD47962.complete
Subject Subject Range Query Range Percent Splice Strand
4 570409..570533 165..289 100 <- Minus
4 570604..570767 1..164 100   Minus
4 569975..570176 400..601 100 <- Minus
4 570234..570343 290..399 100 <- Minus
4 568296..569056 790..1550 100 <- Minus
4 569114..569301 602..789 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:18:24 Download gff for LD47962.complete
Subject Subject Range Query Range Percent Splice Strand
4 570409..570533 165..289 100 <- Minus
4 570604..570767 1..164 100   Minus
4 569975..570176 400..601 100 <- Minus
4 570234..570343 290..399 100 <- Minus
4 568296..569056 790..1550 100 <- Minus
4 569114..569301 602..789 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:04:25 Download gff for LD47962.complete
Subject Subject Range Query Range Percent Splice Strand
arm_4 589740..589927 602..789 100 <- Minus
arm_4 590601..590802 400..601 100 <- Minus
arm_4 590860..590969 290..399 100 <- Minus
arm_4 591035..591159 165..289 100 <- Minus
arm_4 591230..591393 1..164 100   Minus
arm_4 588922..589682 790..1550 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:32:22 Download gff for LD47962.complete
Subject Subject Range Query Range Percent Splice Strand
4 568296..569056 790..1550 100 <- Minus
4 569114..569301 602..789 100 <- Minus
4 569975..570176 400..601 100 <- Minus
4 570234..570343 290..399 100 <- Minus
4 570409..570533 165..289 100 <- Minus
4 570604..570767 1..164 100   Minus

LD47962.pep Sequence

Translation from 72 to 1478

> LD47962.pep
MANIMRRTLIPGLSHLRLRPQLVAAGSAALTSQETRRGAAKWYPDPEFMK
QFSGPVMYPDEVTSLWTVPPWNSKVTPVEKSVRNLTLNFGPQHPAAHGVL
RLVLELDGETVMRADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM
CNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRILNHIMAVGTHALDVG
ALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIY
EFASKFAERLDEVEDVLTTNRIWVQRTEDIGIVTAEEALNYGFSGVMLRG
SGIKWDLRKQQPYDAYNLVNFDVPIGTKGDCYDRYLCRVEEMRQSLRIID
QCLNQMPAGEIKTDDAKVAPPSRSEMKTSMEALIHHFKLFTQGYQVPPGA
TYTAIEAPKGEFGVYLISDGSSRPYRCKIKAPGFAHLAALEKIGKQHMLA
DVVAIIGTLDVVFGEIDR*

LD47962.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:02:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19015-PA 470 GF19015-PA 3..470 1..468 2310 91.2 Plus
Dana\GF16933-PA 519 GF16933-PA 93..519 42..468 1551 65.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:02:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16443-PA 468 GG16443-PA 1..468 1..468 2498 98.9 Plus
Dere\GG11402-PA 523 GG11402-PA 92..523 37..468 1574 65.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:02:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23924-PA 469 GH23924-PA 1..469 1..468 2314 90.8 Plus
Dgri\GH18233-PA 529 GH18233-PA 98..529 37..468 1585 67.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:33
Subject Length Description Subject Range Query Range Score Percent Strand
ND-49-PB 468 CG1970-PB 1..468 1..468 2454 100 Plus
ND-49-PA 468 CG1970-PA 1..468 1..468 2454 100 Plus
ND-49L-PB 523 CG11913-PB 97..523 42..468 1537 65.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:02:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14091-PA 449 GI14091-PA 12..449 31..468 2289 96.1 Plus
Dmoj\GI10189-PA 478 GI10189-PA 47..478 37..468 1589 67.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:02:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18172-PA 452 GL18172-PA 1..452 17..468 2343 95.1 Plus
Dper\GL12099-PA 495 GL12099-PA 64..495 37..468 1566 65.7 Plus
Dper\GL16671-PA 127 GL16671-PA 4..123 2..118 446 70 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:02:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25154-PA 440 GA25154-PA 4..440 32..468 2309 96.8 Plus
Dpse\GA11278-PA 517 GA11278-PA 86..517 37..468 1558 65.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:02:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26777-PA 468 GM26777-PA 1..468 1..468 2491 98.5 Plus
Dsec\GM17844-PA 502 GM17844-PA 76..502 42..468 1571 65.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:02:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21215-PA 194 GD21215-PA 2..194 276..468 727 64.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:02:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13840-PA 468 GJ13840-PA 6..468 5..468 2312 91.6 Plus
Dvir\GJ23477-PA 501 GJ23477-PA 70..501 37..468 1566 66.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:02:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13585-PA 469 GK13585-PA 3..469 1..468 2362 93.6 Plus
Dwil\GK11092-PA 510 GK11092-PA 84..510 42..468 1587 68.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:02:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14510-PA 468 GE14510-PA 1..468 1..468 2487 98.5 Plus
Dyak\GE23599-PA 523 GE23599-PA 97..523 42..468 1566 65.3 Plus

LD47962.hyp Sequence

Translation from 72 to 1478

> LD47962.hyp
MANIMRRTLIPGLSHLRLRPQLVAAGSAALTSQETRRGAAKWYPDPEFMK
QFSGPVMYPDEVTSLWTVPPWNSKVTPVEKSVRNLTLNFGPQHPAAHGVL
RLVLELDGETVMRADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM
CNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRILNHIMAVGTHALDVG
ALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIY
EFASKFAERLDEVEDVLTTNRIWVQRTEDIGIVTAEEALNYGFSGVMLRG
SGIKWDLRKQQPYDAYNLVNFDVPIGTKGDCYDRYLCRVEEMRQSLRIID
QCLNQMPAGEIKTDDAKVAPPSRSEMKTSMEALIHHFKLFTQGYQVPPGA
TYTAIEAPKGEFGVYLISDGSSRPYRCKIKAPGFAHLAALEKIGKQHMLA
DVVAIIGTLDVVFGEIDR*

LD47962.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:01:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG1970-PB 468 CG1970-PB 1..468 1..468 2454 100 Plus
CG1970-PA 468 CG1970-PA 1..468 1..468 2454 100 Plus
CG11913-PB 523 CG11913-PB 97..523 42..468 1537 65.5 Plus