Clone LD47989 Report

Search the DGRC for LD47989

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:479
Well:89
Vector:pOT2
Associated Gene/Transcripthyx-RA
Protein status:LD47989.pep: gold
Preliminary Size:2154
Sequenced Size:2224

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11990 2001-01-01 Release 2 assignment
CG11990 2001-10-10 Blastp of sequenced clone
CG11990 2003-01-01 Sim4 clustering to Release 3
hyx 2008-04-29 Release 5.5 accounting
hyx 2008-08-15 Release 5.9 accounting
hyx 2008-12-18 5.12 accounting

Clone Sequence Records

LD47989.complete Sequence

2224 bp (2224 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061525

> LD47989.complete
TCACACTCCACGCAACCTCTGGCAAAAAACTAAAAATATGCCATAAAAAG
CGAGAATCGAAGTTGTTTATATATCTTTCGCGGATTACAAAGTGCGTAGC
CGCCGCGCGCCTTCCAGAGCGACACCGACCACACACGCCCGCCGCCCGAA
AACACACAGAAAACCGGCAGAAAAATGGCAGATCCGCTCAGCCTGCTTCG
GCAGTACAACATAAACAAAAAGGAGATTGTCGAGCGAGACAGCCAGATTA
TCTTCGGCGAGTTCTCCTGGCCGAAGAGCGTGAAGACCAACTATCTCAAA
TATGGATCCGGTAAGAAGGGCGCTCCACGTGAGTACTACACGCTGGAGTG
CCTGCTGTACCTGCTCAAGAATGTGATGCTGCAACACTCGGTCTACGTGC
GACAGTGCGCCGCCGAGGATATACCCGCTGTGAATCGGCCGGATCGTAAA
GAGCTCCTGGCCTATCTGAATGGCGAGACGCCAACGTGTGCCAGCATCGA
CAAGAGTGCCCCGCTGGAAATCCCCACTCAGGTGAAGCGTGCCGCCGAGG
GTGAACCTTCCAGCGTTGAGGTGGCTGCCAAGAAGGCCCGCTTCGAGGAG
ACTCAAGTGCAGAAGGTGCGCGAGCAATTGGCCGCCCGATGGGATGTCAA
CCAGAAGGAGACCGCTGTCAACATGGACAACATCAAGTCGCTGTCCGAGA
CGATGTCCGTTGAGAAGATCGCCGCCATCAAGGCAAAGCGTCTGGCCAAC
AAGCGAACGACCATTAAAAGGACGGACAATGACGAGGCCATGGGAACTGA
TTTGCGTGCCATCCTGGACTATGATGTGGACTCCACAAAGGACATTATCA
GCAGAGAACGGCAGTGGCGCACGCGAACTTCGATTCTGCAAAGCACGGGC
AAGATCTTTGCCAAGAACATCTTTGCTATGCTTCAGGGCATCAAGGCGCG
CGAGGAGGGACGCAATCGTCCACAGGTGCCCAATCCCATTAAGATGCCGG
AGCCGGCTCGAATAGCCAAACCACAACCGCAGCTCTCGCAATACAACCGT
TACGACCAGGAGCGCTTCAATCGGCAAAAGGAGGAGACCGAGGGCTTTAA
GATCGACACGCTCGGCACATACCACGGTATGTCGCTGAAATCCGTGACGG
AGGGCTCACTGGCTCAGCGTAAGGCGCAGGCTAACAACCTACCGGGAGCA
CCGGGTGTAATAGCGGGAGCAGCCGCCGGGCGGCCCAAGGAATTGCTACC
TGCGGCCCAAGCTCGGCAACTGCCCGCCAATGGTCCATCGAAGCGAACAT
CTCGCACCCCCATTATTATCATACCGTCTGCCAACACAAGCCTCATTACC
ATGCTCAACGCGAAGGATATCCTGCAGGAACTGCGCTTCATGTCCACCTC
GGATAAAAAGCTGCAGGGCTGCCAGCGCGAATGCGAAGTGCTGTTACAGC
GAAAACGCAACAATCAGACTGTGTCTTACCGGGTGATAGATAATCCCACC
AAGCTCTCGCAACAGGAGTGGCAACGGGTGGTGGCCGTCTTCGTTATGGG
ACCCCAGTGGCAGTTCAAGGGCTGGCCTTGGGAAGGCAATCCCGTCGATA
TATTCTCAAAAATTTGCGCTTTTCATTTGTGCTTTAGCGAAATGAAATTG
GACTCAAACGTGGAGCGCTGGTCAGTGACGCTACTCCGACTATCGCAAAA
CAAGCGTCATATGGATCGGGCAGTGCTCAGCAAATTTTGGGAAACTTTGG
ACAAATATATAGCCAAGTACAAGCCCGATTTACGATATTAACCCTCACCG
CATTCTTAAACGTTCTGCTGAAACACGACACCTGCTGTTTTCAATCCCAC
TCCCAAGTAGTTACCATTATTATAGACAGGCTGTACTACATTATGCAACA
AACGACGCAAATAGTATGTTACAGTGTGCGCCCAACTTCCGTAGGAAAGA
CACCAAGCCGAATCTGGGGCATTTGGCCAGTTCCAGTGCGAGTTTCCGAT
TAGAGCCCGACCAGGATTATCTCGCTTTTGGCAACAGCATTATAAGTCGC
AGGCCTGCGATCGTGCAAATAGGCCCAAATACGCAGTTAGTAGTTAAGAT
AAAGTTTTTCGTTCAAATTGTACAATGTAAACTACAAAACACAAACATCT
GAGAGCAAGTATCCTTTGTATTTTTAGTGATAATAAACAGTTAAAAGCCA
AAAAAAAAAAAAAAAAAAAAAAAA

LD47989.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:58:39
Subject Length Description Subject Range Query Range Score Percent Strand
hyx.a 2403 hyx.a 203..2402 1..2200 11000 100 Plus
hyx-RA 2495 hyx-RA 203..2402 1..2200 11000 100 Plus
hyx-RB 2423 hyx-RB 131..2330 1..2200 11000 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:13:28
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 4866048..4867192 305..1449 5710 99.9 Plus
chr3R 27901430 chr3R 4867786..4868230 1755..2199 2165 99.1 Plus
chr3R 27901430 chr3R 4865669..4865973 1..305 1525 100 Plus
chr3R 27901430 chr3R 4867350..4867514 1448..1612 825 100 Plus
chr3R 27901430 chr3R 4867582..4867723 1613..1754 710 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:45:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:13:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9040167..9041311 305..1449 5725 100 Plus
3R 32079331 3R 9041905..9042350 1755..2200 2230 100 Plus
3R 32079331 3R 9039788..9040092 1..305 1525 100 Plus
3R 32079331 3R 9041469..9041633 1448..1612 825 100 Plus
3R 32079331 3R 9041701..9041842 1613..1754 710 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:17:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 8780998..8782142 305..1449 5725 100 Plus
3R 31820162 3R 8782736..8783181 1755..2200 2230 100 Plus
3R 31820162 3R 8780619..8780923 1..305 1525 100 Plus
3R 31820162 3R 8782300..8782464 1448..1612 825 100 Plus
3R 31820162 3R 8782532..8782673 1613..1754 710 100 Plus
Blast to na_te.dros performed on 2019-03-15 16:13:26 has no hits.

LD47989.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:14:09 Download gff for LD47989.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 4865669..4865973 1..305 100 -> Plus
chr3R 4866049..4867192 306..1449 99 -> Plus
chr3R 4867352..4867514 1450..1612 100 -> Plus
chr3R 4867582..4867723 1613..1754 100 -> Plus
chr3R 4867786..4868230 1755..2199 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:32:27 Download gff for LD47989.complete
Subject Subject Range Query Range Percent Splice Strand
hyx-RB 1..1617 175..1791 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:57:51 Download gff for LD47989.complete
Subject Subject Range Query Range Percent Splice Strand
hyx-RB 1..1617 175..1791 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:56:13 Download gff for LD47989.complete
Subject Subject Range Query Range Percent Splice Strand
hyx-RA 1..1617 175..1791 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:40:52 Download gff for LD47989.complete
Subject Subject Range Query Range Percent Splice Strand
hyx-RA 1..1617 175..1791 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:29:49 Download gff for LD47989.complete
Subject Subject Range Query Range Percent Splice Strand
hyx-RA 1..1617 175..1791 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:12:06 Download gff for LD47989.complete
Subject Subject Range Query Range Percent Splice Strand
hyx-RB 103..2301 1..2199 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:57:51 Download gff for LD47989.complete
Subject Subject Range Query Range Percent Splice Strand
hyx-RB 103..2301 1..2199 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:56:13 Download gff for LD47989.complete
Subject Subject Range Query Range Percent Splice Strand
hyx-RA 23..2221 1..2199 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:40:53 Download gff for LD47989.complete
Subject Subject Range Query Range Percent Splice Strand
hyx-RA 1..2199 1..2199 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:29:49 Download gff for LD47989.complete
Subject Subject Range Query Range Percent Splice Strand
hyx-RA 23..2221 1..2199 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:14:09 Download gff for LD47989.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9039788..9040092 1..305 100 -> Plus
3R 9040168..9041311 306..1449 100 -> Plus
3R 9041471..9041633 1450..1612 100 -> Plus
3R 9041701..9041842 1613..1754 100 -> Plus
3R 9041905..9042349 1755..2199 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:14:09 Download gff for LD47989.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9039788..9040092 1..305 100 -> Plus
3R 9040168..9041311 306..1449 100 -> Plus
3R 9041471..9041633 1450..1612 100 -> Plus
3R 9041701..9041842 1613..1754 100 -> Plus
3R 9041905..9042349 1755..2199 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:14:09 Download gff for LD47989.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9039788..9040092 1..305 100 -> Plus
3R 9040168..9041311 306..1449 100 -> Plus
3R 9041471..9041633 1450..1612 100 -> Plus
3R 9041701..9041842 1613..1754 100 -> Plus
3R 9041905..9042349 1755..2199 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:56:13 Download gff for LD47989.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4865510..4865814 1..305 100 -> Plus
arm_3R 4865890..4867033 306..1449 100 -> Plus
arm_3R 4867193..4867355 1450..1612 100 -> Plus
arm_3R 4867423..4867564 1613..1754 100 -> Plus
arm_3R 4867627..4868071 1755..2199 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:24:00 Download gff for LD47989.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8782532..8782673 1613..1754 100 -> Plus
3R 8780619..8780923 1..305 100 -> Plus
3R 8780999..8782142 306..1449 100 -> Plus
3R 8782302..8782464 1450..1612 100 -> Plus
3R 8782736..8783180 1755..2199 100   Plus

LD47989.pep Sequence

Translation from 174 to 1790

> LD47989.pep
MADPLSLLRQYNINKKEIVERDSQIIFGEFSWPKSVKTNYLKYGSGKKGA
PREYYTLECLLYLLKNVMLQHSVYVRQCAAEDIPAVNRPDRKELLAYLNG
ETPTCASIDKSAPLEIPTQVKRAAEGEPSSVEVAAKKARFEETQVQKVRE
QLAARWDVNQKETAVNMDNIKSLSETMSVEKIAAIKAKRLANKRTTIKRT
DNDEAMGTDLRAILDYDVDSTKDIISRERQWRTRTSILQSTGKIFAKNIF
AMLQGIKAREEGRNRPQVPNPIKMPEPARIAKPQPQLSQYNRYDQERFNR
QKEETEGFKIDTLGTYHGMSLKSVTEGSLAQRKAQANNLPGAPGVIAGAA
AGRPKELLPAAQARQLPANGPSKRTSRTPIIIIPSANTSLITMLNAKDIL
QELRFMSTSDKKLQGCQRECEVLLQRKRNNQTVSYRVIDNPTKLSQQEWQ
RVVAVFVMGPQWQFKGWPWEGNPVDIFSKICAFHLCFSEMKLDSNVERWS
VTLLRLSQNKRHMDRAVLSKFWETLDKYIAKYKPDLRY*

LD47989.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:46:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16578-PA 537 GF16578-PA 1..537 1..538 2742 94.6 Plus
Dana\GF11166-PA 351 GF11166-PA 1..341 167..532 547 34.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:46:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14760-PA 538 GG14760-PA 1..538 1..538 2798 96.5 Plus
Dere\GG22473-PA 363 GG22473-PA 5..351 170..530 489 33.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:46:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19383-PA 539 GH19383-PA 1..539 1..538 2620 90.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:24:01
Subject Length Description Subject Range Query Range Score Percent Strand
hyx-PB 538 CG11990-PB 1..538 1..538 2776 100 Plus
hyx-PA 538 CG11990-PA 1..538 1..538 2776 100 Plus
CG6220-PA 359 CG6220-PA 5..347 170..530 440 31.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:46:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22586-PA 541 GI22586-PA 1..541 1..538 2629 90.6 Plus
Dmoj\GI20980-PA 636 GI20980-PA 458..623 361..529 314 37.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:46:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12117-PA 540 GL12117-PA 1..540 1..538 2619 90.7 Plus
Dper\GL17469-PA 280 GL17469-PA 191..257 463..529 176 38.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:47:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11316-PA 540 GA11316-PA 1..540 1..538 2619 90.7 Plus
Dpse\GA24204-PA 352 GA24204-PA 179..334 375..529 373 41 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:47:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23781-PA 538 GM23781-PA 1..538 1..538 2884 99.8 Plus
Dsec\GM20257-PA 367 GM20257-PA 1..357 167..532 441 33.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:47:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18591-PA 538 GD18591-PA 1..538 1..538 2879 99.6 Plus
Dsim\GD25743-PA 367 GD25743-PA 1..357 167..532 459 33.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:47:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10306-PA 540 GJ10306-PA 1..540 1..538 2654 91.5 Plus
Dvir\GJ20699-PA 536 GJ20699-PA 368..524 374..530 312 36.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:47:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11679-PA 545 GK11679-PA 1..545 1..538 2442 85.9 Plus
Dwil\GK17947-PA 362 GK17947-PA 8..350 171..530 459 31.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:47:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25925-PA 538 GE25925-PA 1..538 1..538 2798 96.7 Plus
Dyak\GE13343-PA 368 GE13343-PA 1..356 167..530 497 33.3 Plus

LD47989.hyp Sequence

Translation from 174 to 1790

> LD47989.hyp
MADPLSLLRQYNINKKEIVERDSQIIFGEFSWPKSVKTNYLKYGSGKKGA
PREYYTLECLLYLLKNVMLQHSVYVRQCAAEDIPAVNRPDRKELLAYLNG
ETPTCASIDKSAPLEIPTQVKRAAEGEPSSVEVAAKKARFEETQVQKVRE
QLAARWDVNQKETAVNMDNIKSLSETMSVEKIAAIKAKRLANKRTTIKRT
DNDEAMGTDLRAILDYDVDSTKDIISRERQWRTRTSILQSTGKIFAKNIF
AMLQGIKAREEGRNRPQVPNPIKMPEPARIAKPQPQLSQYNRYDQERFNR
QKEETEGFKIDTLGTYHGMSLKSVTEGSLAQRKAQANNLPGAPGVIAGAA
AGRPKELLPAAQARQLPANGPSKRTSRTPIIIIPSANTSLITMLNAKDIL
QELRFMSTSDKKLQGCQRECEVLLQRKRNNQTVSYRVIDNPTKLSQQEWQ
RVVAVFVMGPQWQFKGWPWEGNPVDIFSKICAFHLCFSEMKLDSNVERWS
VTLLRLSQNKRHMDRAVLSKFWETLDKYIAKYKPDLRY*

LD47989.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:15:43
Subject Length Description Subject Range Query Range Score Percent Strand
hyx-PB 538 CG11990-PB 1..538 1..538 2776 100 Plus
hyx-PA 538 CG11990-PA 1..538 1..538 2776 100 Plus
CG6220-PA 359 CG6220-PA 5..347 170..530 440 31.3 Plus