BDGP Sequence Production Resources |
Search the DGRC for LD47989
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 479 |
Well: | 89 |
Vector: | pOT2 |
Associated Gene/Transcript | hyx-RA |
Protein status: | LD47989.pep: gold |
Preliminary Size: | 2154 |
Sequenced Size: | 2224 |
Gene | Date | Evidence |
---|---|---|
CG11990 | 2001-01-01 | Release 2 assignment |
CG11990 | 2001-10-10 | Blastp of sequenced clone |
CG11990 | 2003-01-01 | Sim4 clustering to Release 3 |
hyx | 2008-04-29 | Release 5.5 accounting |
hyx | 2008-08-15 | Release 5.9 accounting |
hyx | 2008-12-18 | 5.12 accounting |
2224 bp (2224 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061525
> LD47989.complete TCACACTCCACGCAACCTCTGGCAAAAAACTAAAAATATGCCATAAAAAG CGAGAATCGAAGTTGTTTATATATCTTTCGCGGATTACAAAGTGCGTAGC CGCCGCGCGCCTTCCAGAGCGACACCGACCACACACGCCCGCCGCCCGAA AACACACAGAAAACCGGCAGAAAAATGGCAGATCCGCTCAGCCTGCTTCG GCAGTACAACATAAACAAAAAGGAGATTGTCGAGCGAGACAGCCAGATTA TCTTCGGCGAGTTCTCCTGGCCGAAGAGCGTGAAGACCAACTATCTCAAA TATGGATCCGGTAAGAAGGGCGCTCCACGTGAGTACTACACGCTGGAGTG CCTGCTGTACCTGCTCAAGAATGTGATGCTGCAACACTCGGTCTACGTGC GACAGTGCGCCGCCGAGGATATACCCGCTGTGAATCGGCCGGATCGTAAA GAGCTCCTGGCCTATCTGAATGGCGAGACGCCAACGTGTGCCAGCATCGA CAAGAGTGCCCCGCTGGAAATCCCCACTCAGGTGAAGCGTGCCGCCGAGG GTGAACCTTCCAGCGTTGAGGTGGCTGCCAAGAAGGCCCGCTTCGAGGAG ACTCAAGTGCAGAAGGTGCGCGAGCAATTGGCCGCCCGATGGGATGTCAA CCAGAAGGAGACCGCTGTCAACATGGACAACATCAAGTCGCTGTCCGAGA CGATGTCCGTTGAGAAGATCGCCGCCATCAAGGCAAAGCGTCTGGCCAAC AAGCGAACGACCATTAAAAGGACGGACAATGACGAGGCCATGGGAACTGA TTTGCGTGCCATCCTGGACTATGATGTGGACTCCACAAAGGACATTATCA GCAGAGAACGGCAGTGGCGCACGCGAACTTCGATTCTGCAAAGCACGGGC AAGATCTTTGCCAAGAACATCTTTGCTATGCTTCAGGGCATCAAGGCGCG CGAGGAGGGACGCAATCGTCCACAGGTGCCCAATCCCATTAAGATGCCGG AGCCGGCTCGAATAGCCAAACCACAACCGCAGCTCTCGCAATACAACCGT TACGACCAGGAGCGCTTCAATCGGCAAAAGGAGGAGACCGAGGGCTTTAA GATCGACACGCTCGGCACATACCACGGTATGTCGCTGAAATCCGTGACGG AGGGCTCACTGGCTCAGCGTAAGGCGCAGGCTAACAACCTACCGGGAGCA CCGGGTGTAATAGCGGGAGCAGCCGCCGGGCGGCCCAAGGAATTGCTACC TGCGGCCCAAGCTCGGCAACTGCCCGCCAATGGTCCATCGAAGCGAACAT CTCGCACCCCCATTATTATCATACCGTCTGCCAACACAAGCCTCATTACC ATGCTCAACGCGAAGGATATCCTGCAGGAACTGCGCTTCATGTCCACCTC GGATAAAAAGCTGCAGGGCTGCCAGCGCGAATGCGAAGTGCTGTTACAGC GAAAACGCAACAATCAGACTGTGTCTTACCGGGTGATAGATAATCCCACC AAGCTCTCGCAACAGGAGTGGCAACGGGTGGTGGCCGTCTTCGTTATGGG ACCCCAGTGGCAGTTCAAGGGCTGGCCTTGGGAAGGCAATCCCGTCGATA TATTCTCAAAAATTTGCGCTTTTCATTTGTGCTTTAGCGAAATGAAATTG GACTCAAACGTGGAGCGCTGGTCAGTGACGCTACTCCGACTATCGCAAAA CAAGCGTCATATGGATCGGGCAGTGCTCAGCAAATTTTGGGAAACTTTGG ACAAATATATAGCCAAGTACAAGCCCGATTTACGATATTAACCCTCACCG CATTCTTAAACGTTCTGCTGAAACACGACACCTGCTGTTTTCAATCCCAC TCCCAAGTAGTTACCATTATTATAGACAGGCTGTACTACATTATGCAACA AACGACGCAAATAGTATGTTACAGTGTGCGCCCAACTTCCGTAGGAAAGA CACCAAGCCGAATCTGGGGCATTTGGCCAGTTCCAGTGCGAGTTTCCGAT TAGAGCCCGACCAGGATTATCTCGCTTTTGGCAACAGCATTATAAGTCGC AGGCCTGCGATCGTGCAAATAGGCCCAAATACGCAGTTAGTAGTTAAGAT AAAGTTTTTCGTTCAAATTGTACAATGTAAACTACAAAACACAAACATCT GAGAGCAAGTATCCTTTGTATTTTTAGTGATAATAAACAGTTAAAAGCCA AAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 4866048..4867192 | 305..1449 | 5710 | 99.9 | Plus |
chr3R | 27901430 | chr3R | 4867786..4868230 | 1755..2199 | 2165 | 99.1 | Plus |
chr3R | 27901430 | chr3R | 4865669..4865973 | 1..305 | 1525 | 100 | Plus |
chr3R | 27901430 | chr3R | 4867350..4867514 | 1448..1612 | 825 | 100 | Plus |
chr3R | 27901430 | chr3R | 4867582..4867723 | 1613..1754 | 710 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 9040167..9041311 | 305..1449 | 5725 | 100 | Plus |
3R | 32079331 | 3R | 9041905..9042350 | 1755..2200 | 2230 | 100 | Plus |
3R | 32079331 | 3R | 9039788..9040092 | 1..305 | 1525 | 100 | Plus |
3R | 32079331 | 3R | 9041469..9041633 | 1448..1612 | 825 | 100 | Plus |
3R | 32079331 | 3R | 9041701..9041842 | 1613..1754 | 710 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 8780998..8782142 | 305..1449 | 5725 | 100 | Plus |
3R | 31820162 | 3R | 8782736..8783181 | 1755..2200 | 2230 | 100 | Plus |
3R | 31820162 | 3R | 8780619..8780923 | 1..305 | 1525 | 100 | Plus |
3R | 31820162 | 3R | 8782300..8782464 | 1448..1612 | 825 | 100 | Plus |
3R | 31820162 | 3R | 8782532..8782673 | 1613..1754 | 710 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 4865669..4865973 | 1..305 | 100 | -> | Plus |
chr3R | 4866049..4867192 | 306..1449 | 99 | -> | Plus |
chr3R | 4867352..4867514 | 1450..1612 | 100 | -> | Plus |
chr3R | 4867582..4867723 | 1613..1754 | 100 | -> | Plus |
chr3R | 4867786..4868230 | 1755..2199 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
hyx-RB | 1..1617 | 175..1791 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
hyx-RB | 1..1617 | 175..1791 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
hyx-RA | 1..1617 | 175..1791 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
hyx-RA | 1..1617 | 175..1791 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
hyx-RA | 1..1617 | 175..1791 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
hyx-RB | 103..2301 | 1..2199 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
hyx-RB | 103..2301 | 1..2199 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
hyx-RA | 23..2221 | 1..2199 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
hyx-RA | 1..2199 | 1..2199 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
hyx-RA | 23..2221 | 1..2199 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9039788..9040092 | 1..305 | 100 | -> | Plus |
3R | 9040168..9041311 | 306..1449 | 100 | -> | Plus |
3R | 9041471..9041633 | 1450..1612 | 100 | -> | Plus |
3R | 9041701..9041842 | 1613..1754 | 100 | -> | Plus |
3R | 9041905..9042349 | 1755..2199 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9039788..9040092 | 1..305 | 100 | -> | Plus |
3R | 9040168..9041311 | 306..1449 | 100 | -> | Plus |
3R | 9041471..9041633 | 1450..1612 | 100 | -> | Plus |
3R | 9041701..9041842 | 1613..1754 | 100 | -> | Plus |
3R | 9041905..9042349 | 1755..2199 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9039788..9040092 | 1..305 | 100 | -> | Plus |
3R | 9040168..9041311 | 306..1449 | 100 | -> | Plus |
3R | 9041471..9041633 | 1450..1612 | 100 | -> | Plus |
3R | 9041701..9041842 | 1613..1754 | 100 | -> | Plus |
3R | 9041905..9042349 | 1755..2199 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 4865510..4865814 | 1..305 | 100 | -> | Plus |
arm_3R | 4865890..4867033 | 306..1449 | 100 | -> | Plus |
arm_3R | 4867193..4867355 | 1450..1612 | 100 | -> | Plus |
arm_3R | 4867423..4867564 | 1613..1754 | 100 | -> | Plus |
arm_3R | 4867627..4868071 | 1755..2199 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8782532..8782673 | 1613..1754 | 100 | -> | Plus |
3R | 8780619..8780923 | 1..305 | 100 | -> | Plus |
3R | 8780999..8782142 | 306..1449 | 100 | -> | Plus |
3R | 8782302..8782464 | 1450..1612 | 100 | -> | Plus |
3R | 8782736..8783180 | 1755..2199 | 100 | Plus |
Translation from 174 to 1790
> LD47989.pep MADPLSLLRQYNINKKEIVERDSQIIFGEFSWPKSVKTNYLKYGSGKKGA PREYYTLECLLYLLKNVMLQHSVYVRQCAAEDIPAVNRPDRKELLAYLNG ETPTCASIDKSAPLEIPTQVKRAAEGEPSSVEVAAKKARFEETQVQKVRE QLAARWDVNQKETAVNMDNIKSLSETMSVEKIAAIKAKRLANKRTTIKRT DNDEAMGTDLRAILDYDVDSTKDIISRERQWRTRTSILQSTGKIFAKNIF AMLQGIKAREEGRNRPQVPNPIKMPEPARIAKPQPQLSQYNRYDQERFNR QKEETEGFKIDTLGTYHGMSLKSVTEGSLAQRKAQANNLPGAPGVIAGAA AGRPKELLPAAQARQLPANGPSKRTSRTPIIIIPSANTSLITMLNAKDIL QELRFMSTSDKKLQGCQRECEVLLQRKRNNQTVSYRVIDNPTKLSQQEWQ RVVAVFVMGPQWQFKGWPWEGNPVDIFSKICAFHLCFSEMKLDSNVERWS VTLLRLSQNKRHMDRAVLSKFWETLDKYIAKYKPDLRY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16578-PA | 537 | GF16578-PA | 1..537 | 1..538 | 2742 | 94.6 | Plus |
Dana\GF11166-PA | 351 | GF11166-PA | 1..341 | 167..532 | 547 | 34.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14760-PA | 538 | GG14760-PA | 1..538 | 1..538 | 2798 | 96.5 | Plus |
Dere\GG22473-PA | 363 | GG22473-PA | 5..351 | 170..530 | 489 | 33.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19383-PA | 539 | GH19383-PA | 1..539 | 1..538 | 2620 | 90.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
hyx-PB | 538 | CG11990-PB | 1..538 | 1..538 | 2776 | 100 | Plus |
hyx-PA | 538 | CG11990-PA | 1..538 | 1..538 | 2776 | 100 | Plus |
CG6220-PA | 359 | CG6220-PA | 5..347 | 170..530 | 440 | 31.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22586-PA | 541 | GI22586-PA | 1..541 | 1..538 | 2629 | 90.6 | Plus |
Dmoj\GI20980-PA | 636 | GI20980-PA | 458..623 | 361..529 | 314 | 37.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12117-PA | 540 | GL12117-PA | 1..540 | 1..538 | 2619 | 90.7 | Plus |
Dper\GL17469-PA | 280 | GL17469-PA | 191..257 | 463..529 | 176 | 38.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11316-PA | 540 | GA11316-PA | 1..540 | 1..538 | 2619 | 90.7 | Plus |
Dpse\GA24204-PA | 352 | GA24204-PA | 179..334 | 375..529 | 373 | 41 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23781-PA | 538 | GM23781-PA | 1..538 | 1..538 | 2884 | 99.8 | Plus |
Dsec\GM20257-PA | 367 | GM20257-PA | 1..357 | 167..532 | 441 | 33.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18591-PA | 538 | GD18591-PA | 1..538 | 1..538 | 2879 | 99.6 | Plus |
Dsim\GD25743-PA | 367 | GD25743-PA | 1..357 | 167..532 | 459 | 33.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10306-PA | 540 | GJ10306-PA | 1..540 | 1..538 | 2654 | 91.5 | Plus |
Dvir\GJ20699-PA | 536 | GJ20699-PA | 368..524 | 374..530 | 312 | 36.9 | Plus |
Translation from 174 to 1790
> LD47989.hyp MADPLSLLRQYNINKKEIVERDSQIIFGEFSWPKSVKTNYLKYGSGKKGA PREYYTLECLLYLLKNVMLQHSVYVRQCAAEDIPAVNRPDRKELLAYLNG ETPTCASIDKSAPLEIPTQVKRAAEGEPSSVEVAAKKARFEETQVQKVRE QLAARWDVNQKETAVNMDNIKSLSETMSVEKIAAIKAKRLANKRTTIKRT DNDEAMGTDLRAILDYDVDSTKDIISRERQWRTRTSILQSTGKIFAKNIF AMLQGIKAREEGRNRPQVPNPIKMPEPARIAKPQPQLSQYNRYDQERFNR QKEETEGFKIDTLGTYHGMSLKSVTEGSLAQRKAQANNLPGAPGVIAGAA AGRPKELLPAAQARQLPANGPSKRTSRTPIIIIPSANTSLITMLNAKDIL QELRFMSTSDKKLQGCQRECEVLLQRKRNNQTVSYRVIDNPTKLSQQEWQ RVVAVFVMGPQWQFKGWPWEGNPVDIFSKICAFHLCFSEMKLDSNVERWS VTLLRLSQNKRHMDRAVLSKFWETLDKYIAKYKPDLRY*