Clone LD47990 Report

Search the DGRC for LD47990

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:479
Well:90
Vector:pOT2
Associated Gene/TranscriptCG9821-RA
Protein status:LD47990.pep: gold
Preliminary Size:2475
Sequenced Size:2351

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9821 2001-01-01 Release 2 assignment
CG9821 2001-10-10 Blastp of sequenced clone
CG9821 2003-01-01 Sim4 clustering to Release 3
CG9821 2008-04-29 Release 5.5 accounting
CG9821 2008-08-15 Release 5.9 accounting
CG9821 2008-12-18 5.12 accounting

Clone Sequence Records

LD47990.complete Sequence

2351 bp (2351 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061526

> LD47990.complete
AGGCAAGCGTACCGATGCGCAAAGAACAAGCATAAGCGAAGAAGATAAAG
ATATCGATTAAAATTTCTGCTACAAAAATAAATATATATGTAACGCATAT
TGTAAATGTTCTAAGTTAAGTGACATAAATCAAATATTTGTGTAAAGTTT
AATATTTTAATACGCGTCGAAGTACAACGAGTGAGGCTACAGAAGAGCAC
ACACTAAAGTGGAGTACTTGGCGAGCGCAAATAACGGAAATCAAATTCGA
AATAAACGCTGCGCAATAGACGGTGGTGTACATAAGAGTTTAACAAAATC
CGAATCAGAATCAGTTGAAAGTGTGATTTTTTTGAGCCTTTGTCTGTAAG
TGAAGAGAAAGCTTTAAGCGGAATTACATCTATATATATATATATAAATA
TATAAATACGAAGCCAGCCCGTCGCCATTTTGAAAGTGATTTTACAAAAC
ACACACACACACATATATATACACAGCTGCGAACACATCCACATATAACC
CCAAATAAAATCCGAAGAAAAGAGCAAAAAAAAAAAAACGCAAAACAAAC
CAATTTCCGCAACATTTTAAAGTGAAACATCCAAATCAAGGCAACTTTTA
ACCCAAACTCAACCCATTTTGTATATAACGCTTGTCGAAATATCGAAATC
TGTATAACGAAGTGGCTGAGAAAACTGCGACACACACACGCACGCAAGCA
CACTCGTTGGTGTGAGGTCTACGGCAAAAAAGATCAGCACGGCTTGGAAT
GCGAAAGCAGCAGTTAAATCAGCGAAGAACAGAGAGTTTGCGAAATTATA
GCTAAGGATAGCTTAACCGGAGTAAAAAAAAAATAAATCAACAGACTGAT
AAACAATACATAACGTTACAAGTAAAACTAAAAGTAAAGTAAACAACAGC
TGTACATAAAACATAAAGGAGAAGTGGAAAAGCAGCTACGTGCTCAGCCG
CCCGTCGCCCTTTTCGTTTCCATTTTGGAGGTCATCTCAACTTCGGCGAC
TATCAGCTACCAAAGAAAATAGAGCGGCGCAGCTAGATCAACATCTCAAT
AGCAATAGCAGCAGAAGCAGAATCAGAATCAGAATCAGAAGGCGTTTGGT
TTCGATTTATAAAGAATTGATTTAAGTGCGTGTGATATTTAACGTTAAGC
ATTAATTTAGCGAATTAACCAAAAACAAAAAGGGAAAACAGCAGAAATTT
TAATAAGAGAAAGAGAAGAGGAGATCGGAGAGAGAGAGATATCGATCCAG
AGATCGGAAAGCGACGAAATTACTATGACATACTCGCACAATAGCGTTAG
AAACAACATCAGAATGACAACCGCATCGGCCACCAAGTCCATACGATTAA
AAAAGGGAGCAGCATCAGCGACCTCCGCATCCAACTCATCCACCCCCTCG
CCCACATCCGCACCCGTCTCCCCCACATCCGTATCCGCATCCGCACCAGC
AACGCCCTTGGTAACTGCACATTCCAACAGTATTGCCAGCAGTACAAATA
ACGCCCAATTCCTGAGCTCCTCGCCCACGAGTCTCGGTTTTGGCCTGGGT
CTATCCGCTCTTGCCACGCCCCCGAACCAGAGGCAACGGCAACTGCAGTC
CCAGTCGACCGGATCCAAGAACAAGTATCAGCAGTCGCAGCAGCAGCGCC
AGTCGCCGCAGCAGCAGCAGGGATCCTCTGTAGGCGGTGGAGGCTTCTTC
TTTGCCAACAACAACCGAAGGAACGGAGGAGGACGTTCGCCCCAGGGAGC
TATGCAGGTTCGGCAGTCACCAGCCACCATTTTGGGTGGAGGTTTCTCGC
CGGGAATCGTCGGAGGATCGGCTCGCAAGCAGAGGAAGAGCCCTTCGTTG
GGCGGAAAGATATCGCCCCAGCACCAGATGCAGCAGCACCCACTCATACC
CACCGCACTGACGCATTTCGCGGGCAGCAAGTGCTTTGATGCACCAGCTC
CAACGGCGCTGCCCAAGCCACCGCAGCACTGGACGTTGTCCAGGTCGGAG
GGTAAGCTTCCCATGATGATGCCGTCGATGCCCAAGTTCCAGGTGCCGAT
GCAGACAGGCCGCTCGAAGCGGAATCTCCTCGATGACTTCGACACGCACA
ACCTAAAGTTGCTGCTCAATGTGCAGTCGTAACCACACTGGTGCTGGAGG
ATCAGTGTCTGGAGTAGGAAAGCAGGAACAGGATCTGGATCTAGAGCTGG
ATCTGAAGATGGATCTGGAGGACCGACATGAATGGCAAGAACACCCGGTG
GACCCCGAACCCGTCAATGAGTTGCAAAAAAAAATCGATATGAACATAAA
ACCAACAAAAAAAAATTAACAAAAACATAAAACAAAAAAAAAAAAAAAAA
A

LD47990.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:04:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG9821.g 4935 CG9821.g 64..2400 1..2339 11640 99.9 Plus
CG9821.a 5493 CG9821.a 64..2400 1..2339 11640 99.9 Plus
CG9821.c 5501 CG9821.c 64..2400 1..2339 11640 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:17:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 4643626..4645223 2333..732 7765 99.4 Minus
chr3R 27901430 chr3R 4645887..4646615 732..1 3565 99.5 Minus
chrX 22417052 chrX 2319130..2319431 2004..1706 800 85.1 Minus
chrX 22417052 chrX 6844670..6844878 1754..1959 500 83.7 Plus
chrX 22417052 chrX 2319682..2319796 666..552 470 93.9 Minus
chrX 22417052 chrX 2318887..2319130 2315..2049 465 80.9 Minus
chrX 22417052 chrX 6844887..6845089 2113..2333 295 78.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:45:23 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:17:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8817656..8819263 2339..732 8040 100 Minus
3R 32079331 3R 8819927..8820656 732..1 3595 99.7 Minus
X 23542271 X 2425258..2425559 2004..1706 815 85.4 Minus
X 23542271 X 6952515..6952723 1754..1959 500 83.7 Plus
X 23542271 X 2425810..2425924 666..552 470 93.9 Minus
X 23542271 X 2425015..2425258 2315..2049 465 80.9 Minus
X 23542271 X 6952732..6952940 2113..2339 325 79.3 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:28:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 8558487..8560094 2339..732 8040 100 Minus
3R 31820162 3R 8560758..8561487 732..1 3605 99.7 Minus
X 23527363 X 2433356..2433657 2004..1706 825 85.4 Minus
X 23527363 X 6960613..6960821 1754..1959 510 83.7 Plus
X 23527363 X 2433908..2434022 666..552 470 93.9 Minus
X 23527363 X 2433113..2433251 2315..2175 350 84.3 Minus
X 23527363 X 6960878..6961038 2175..2339 315 82.4 Plus
X 23527363 X 6960830..6960886 2113..2169 225 92.9 Plus
X 23527363 X 2433303..2433356 2102..2049 210 92.5 Minus
X 23527363 X 2433243..2433299 2169..2113 210 91.2 Minus
X 23527363 X 6960476..6960554 1575..1647 190 84.8 Plus
X 23527363 X 2433683..2433761 1647..1575 190 84.8 Minus
X 23527363 X 6960414..6960457 1294..1337 160 90.9 Plus
X 23527363 X 2433780..2433823 1337..1294 160 90.9 Minus
Blast to na_te.dros performed 2019-03-15 19:17:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dtei\I-element 5386 Dtei\I-element DTEII 5386bp 390..484 821..917 128 64.6 Plus
gypsy2 6841 gypsy2 GYPSY2 6841bp 424..623 504..708 120 57.1 Plus
roo 9092 roo DM_ROO 9092bp 1076..1120 1047..1091 117 73.3 Plus
gypsy2 6841 gypsy2 GYPSY2 6841bp 394..432 512..550 114 76.9 Plus

LD47990.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:18:18 Download gff for LD47990.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 4643685..4645223 732..2275 96 <- Minus
chr3R 4645888..4646615 1..731 95   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:32:29 Download gff for LD47990.complete
Subject Subject Range Query Range Percent Splice Strand
CG9821-RA 1..858 1275..2132 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:39:05 Download gff for LD47990.complete
Subject Subject Range Query Range Percent Splice Strand
CG9821-RA 1..858 1275..2132 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:47:26 Download gff for LD47990.complete
Subject Subject Range Query Range Percent Splice Strand
CG9821-RA 1..858 1275..2132 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:07:53 Download gff for LD47990.complete
Subject Subject Range Query Range Percent Splice Strand
CG9821-RA 1..858 1275..2132 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:14:50 Download gff for LD47990.complete
Subject Subject Range Query Range Percent Splice Strand
CG9821-RA 1..858 1275..2132 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:20:19 Download gff for LD47990.complete
Subject Subject Range Query Range Percent Splice Strand
CG9821-RA 1..2331 1..2333 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:39:04 Download gff for LD47990.complete
Subject Subject Range Query Range Percent Splice Strand
CG9821-RA 1..2331 1..2333 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:47:26 Download gff for LD47990.complete
Subject Subject Range Query Range Percent Splice Strand
CG9821-RA 27..2357 1..2333 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:07:53 Download gff for LD47990.complete
Subject Subject Range Query Range Percent Splice Strand
CG9821-RA 1..2331 1..2333 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:14:50 Download gff for LD47990.complete
Subject Subject Range Query Range Percent Splice Strand
CG9821-RA 27..2357 1..2333 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:18:18 Download gff for LD47990.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8817662..8819263 732..2333 100 <- Minus
3R 8819928..8820656 1..731 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:18:18 Download gff for LD47990.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8817662..8819263 732..2333 100 <- Minus
3R 8819928..8820656 1..731 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:18:18 Download gff for LD47990.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8817662..8819263 732..2333 100 <- Minus
3R 8819928..8820656 1..731 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:47:26 Download gff for LD47990.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4643384..4644985 732..2333 100 <- Minus
arm_3R 4645650..4646378 1..731 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:44:06 Download gff for LD47990.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8558493..8560094 732..2333 100 <- Minus
3R 8560759..8561487 1..731 99   Minus

LD47990.pep Sequence

Translation from 1274 to 2131

> LD47990.pep
MTYSHNSVRNNIRMTTASATKSIRLKKGAASATSASNSSTPSPTSAPVSP
TSVSASAPATPLVTAHSNSIASSTNNAQFLSSSPTSLGFGLGLSALATPP
NQRQRQLQSQSTGSKNKYQQSQQQRQSPQQQQGSSVGGGGFFFANNNRRN
GGGRSPQGAMQVRQSPATILGGGFSPGIVGGSARKQRKSPSLGGKISPQH
QMQQHPLIPTALTHFAGSKCFDAPAPTALPKPPQHWTLSRSEGKLPMMMP
SMPKFQVPMQTGRSKRNLLDDFDTHNLKLLLNVQS*

LD47990.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:42:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16827-PA 291 GF16827-PA 1..291 1..285 647 66.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:42:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17415-PA 272 GG17415-PA 1..272 14..285 842 89.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:42:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19331-PA 328 GH19331-PA 1..328 1..285 541 50.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:06:44
Subject Length Description Subject Range Query Range Score Percent Strand
aqz-PD 285 CG9821-PD 1..285 1..285 1462 100 Plus
aqz-PC 285 CG9821-PC 1..285 1..285 1462 100 Plus
aqz-PA 285 CG9821-PA 1..285 1..285 1462 100 Plus
aqz-PB 285 CG9821-PB 1..285 1..285 1462 100 Plus
CG32797-PA 202 CG32797-PA 15..167 101..276 518 65.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:42:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23941-PA 303 GI23941-PA 1..303 1..285 592 51.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:42:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12120-PA 309 GL12120-PA 159..309 148..285 467 68.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:42:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22058-PA 309 GA22058-PA 159..309 148..285 467 68.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:42:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26301-PA 277 GM26301-PA 1..277 14..285 1346 97.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:42:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23730-PA 299 GJ23730-PA 154..299 162..285 417 61.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:42:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11819-PA 311 GK11819-PA 1..311 1..285 537 50.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:42:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24815-PA 284 GE24815-PA 1..284 1..285 1350 95.2 Plus

LD47990.hyp Sequence

Translation from 1274 to 2131

> LD47990.hyp
MTYSHNSVRNNIRMTTASATKSIRLKKGAASATSASNSSTPSPTSAPVSP
TSVSASAPATPLVTAHSNSIASSTNNAQFLSSSPTSLGFGLGLSALATPP
NQRQRQLQSQSTGSKNKYQQSQQQRQSPQQQQGSSVGGGGFFFANNNRRN
GGGRSPQGAMQVRQSPATILGGGFSPGIVGGSARKQRKSPSLGGKISPQH
QMQQHPLIPTALTHFAGSKCFDAPAPTALPKPPQHWTLSRSEGKLPMMMP
SMPKFQVPMQTGRSKRNLLDDFDTHNLKLLLNVQS*

LD47990.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG9821-PD 285 CG9821-PD 1..285 1..285 1462 100 Plus
CG9821-PC 285 CG9821-PC 1..285 1..285 1462 100 Plus
CG9821-PA 285 CG9821-PA 1..285 1..285 1462 100 Plus
CG9821-PB 285 CG9821-PB 1..285 1..285 1462 100 Plus
CG32797-PA 202 CG32797-PA 15..167 101..276 518 65.4 Plus