BDGP Sequence Production Resources |
Search the DGRC for LD47990
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 479 |
Well: | 90 |
Vector: | pOT2 |
Associated Gene/Transcript | CG9821-RA |
Protein status: | LD47990.pep: gold |
Preliminary Size: | 2475 |
Sequenced Size: | 2351 |
Gene | Date | Evidence |
---|---|---|
CG9821 | 2001-01-01 | Release 2 assignment |
CG9821 | 2001-10-10 | Blastp of sequenced clone |
CG9821 | 2003-01-01 | Sim4 clustering to Release 3 |
CG9821 | 2008-04-29 | Release 5.5 accounting |
CG9821 | 2008-08-15 | Release 5.9 accounting |
CG9821 | 2008-12-18 | 5.12 accounting |
2351 bp (2351 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061526
> LD47990.complete AGGCAAGCGTACCGATGCGCAAAGAACAAGCATAAGCGAAGAAGATAAAG ATATCGATTAAAATTTCTGCTACAAAAATAAATATATATGTAACGCATAT TGTAAATGTTCTAAGTTAAGTGACATAAATCAAATATTTGTGTAAAGTTT AATATTTTAATACGCGTCGAAGTACAACGAGTGAGGCTACAGAAGAGCAC ACACTAAAGTGGAGTACTTGGCGAGCGCAAATAACGGAAATCAAATTCGA AATAAACGCTGCGCAATAGACGGTGGTGTACATAAGAGTTTAACAAAATC CGAATCAGAATCAGTTGAAAGTGTGATTTTTTTGAGCCTTTGTCTGTAAG TGAAGAGAAAGCTTTAAGCGGAATTACATCTATATATATATATATAAATA TATAAATACGAAGCCAGCCCGTCGCCATTTTGAAAGTGATTTTACAAAAC ACACACACACACATATATATACACAGCTGCGAACACATCCACATATAACC CCAAATAAAATCCGAAGAAAAGAGCAAAAAAAAAAAAACGCAAAACAAAC CAATTTCCGCAACATTTTAAAGTGAAACATCCAAATCAAGGCAACTTTTA ACCCAAACTCAACCCATTTTGTATATAACGCTTGTCGAAATATCGAAATC TGTATAACGAAGTGGCTGAGAAAACTGCGACACACACACGCACGCAAGCA CACTCGTTGGTGTGAGGTCTACGGCAAAAAAGATCAGCACGGCTTGGAAT GCGAAAGCAGCAGTTAAATCAGCGAAGAACAGAGAGTTTGCGAAATTATA GCTAAGGATAGCTTAACCGGAGTAAAAAAAAAATAAATCAACAGACTGAT AAACAATACATAACGTTACAAGTAAAACTAAAAGTAAAGTAAACAACAGC TGTACATAAAACATAAAGGAGAAGTGGAAAAGCAGCTACGTGCTCAGCCG CCCGTCGCCCTTTTCGTTTCCATTTTGGAGGTCATCTCAACTTCGGCGAC TATCAGCTACCAAAGAAAATAGAGCGGCGCAGCTAGATCAACATCTCAAT AGCAATAGCAGCAGAAGCAGAATCAGAATCAGAATCAGAAGGCGTTTGGT TTCGATTTATAAAGAATTGATTTAAGTGCGTGTGATATTTAACGTTAAGC ATTAATTTAGCGAATTAACCAAAAACAAAAAGGGAAAACAGCAGAAATTT TAATAAGAGAAAGAGAAGAGGAGATCGGAGAGAGAGAGATATCGATCCAG AGATCGGAAAGCGACGAAATTACTATGACATACTCGCACAATAGCGTTAG AAACAACATCAGAATGACAACCGCATCGGCCACCAAGTCCATACGATTAA AAAAGGGAGCAGCATCAGCGACCTCCGCATCCAACTCATCCACCCCCTCG CCCACATCCGCACCCGTCTCCCCCACATCCGTATCCGCATCCGCACCAGC AACGCCCTTGGTAACTGCACATTCCAACAGTATTGCCAGCAGTACAAATA ACGCCCAATTCCTGAGCTCCTCGCCCACGAGTCTCGGTTTTGGCCTGGGT CTATCCGCTCTTGCCACGCCCCCGAACCAGAGGCAACGGCAACTGCAGTC CCAGTCGACCGGATCCAAGAACAAGTATCAGCAGTCGCAGCAGCAGCGCC AGTCGCCGCAGCAGCAGCAGGGATCCTCTGTAGGCGGTGGAGGCTTCTTC TTTGCCAACAACAACCGAAGGAACGGAGGAGGACGTTCGCCCCAGGGAGC TATGCAGGTTCGGCAGTCACCAGCCACCATTTTGGGTGGAGGTTTCTCGC CGGGAATCGTCGGAGGATCGGCTCGCAAGCAGAGGAAGAGCCCTTCGTTG GGCGGAAAGATATCGCCCCAGCACCAGATGCAGCAGCACCCACTCATACC CACCGCACTGACGCATTTCGCGGGCAGCAAGTGCTTTGATGCACCAGCTC CAACGGCGCTGCCCAAGCCACCGCAGCACTGGACGTTGTCCAGGTCGGAG GGTAAGCTTCCCATGATGATGCCGTCGATGCCCAAGTTCCAGGTGCCGAT GCAGACAGGCCGCTCGAAGCGGAATCTCCTCGATGACTTCGACACGCACA ACCTAAAGTTGCTGCTCAATGTGCAGTCGTAACCACACTGGTGCTGGAGG ATCAGTGTCTGGAGTAGGAAAGCAGGAACAGGATCTGGATCTAGAGCTGG ATCTGAAGATGGATCTGGAGGACCGACATGAATGGCAAGAACACCCGGTG GACCCCGAACCCGTCAATGAGTTGCAAAAAAAAATCGATATGAACATAAA ACCAACAAAAAAAAATTAACAAAAACATAAAACAAAAAAAAAAAAAAAAA A
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 4643626..4645223 | 2333..732 | 7765 | 99.4 | Minus |
chr3R | 27901430 | chr3R | 4645887..4646615 | 732..1 | 3565 | 99.5 | Minus |
chrX | 22417052 | chrX | 2319130..2319431 | 2004..1706 | 800 | 85.1 | Minus |
chrX | 22417052 | chrX | 6844670..6844878 | 1754..1959 | 500 | 83.7 | Plus |
chrX | 22417052 | chrX | 2319682..2319796 | 666..552 | 470 | 93.9 | Minus |
chrX | 22417052 | chrX | 2318887..2319130 | 2315..2049 | 465 | 80.9 | Minus |
chrX | 22417052 | chrX | 6844887..6845089 | 2113..2333 | 295 | 78.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 8817656..8819263 | 2339..732 | 8040 | 100 | Minus |
3R | 32079331 | 3R | 8819927..8820656 | 732..1 | 3595 | 99.7 | Minus |
X | 23542271 | X | 2425258..2425559 | 2004..1706 | 815 | 85.4 | Minus |
X | 23542271 | X | 6952515..6952723 | 1754..1959 | 500 | 83.7 | Plus |
X | 23542271 | X | 2425810..2425924 | 666..552 | 470 | 93.9 | Minus |
X | 23542271 | X | 2425015..2425258 | 2315..2049 | 465 | 80.9 | Minus |
X | 23542271 | X | 6952732..6952940 | 2113..2339 | 325 | 79.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 8558487..8560094 | 2339..732 | 8040 | 100 | Minus |
3R | 31820162 | 3R | 8560758..8561487 | 732..1 | 3605 | 99.7 | Minus |
X | 23527363 | X | 2433356..2433657 | 2004..1706 | 825 | 85.4 | Minus |
X | 23527363 | X | 6960613..6960821 | 1754..1959 | 510 | 83.7 | Plus |
X | 23527363 | X | 2433908..2434022 | 666..552 | 470 | 93.9 | Minus |
X | 23527363 | X | 2433113..2433251 | 2315..2175 | 350 | 84.3 | Minus |
X | 23527363 | X | 6960878..6961038 | 2175..2339 | 315 | 82.4 | Plus |
X | 23527363 | X | 6960830..6960886 | 2113..2169 | 225 | 92.9 | Plus |
X | 23527363 | X | 2433303..2433356 | 2102..2049 | 210 | 92.5 | Minus |
X | 23527363 | X | 2433243..2433299 | 2169..2113 | 210 | 91.2 | Minus |
X | 23527363 | X | 6960476..6960554 | 1575..1647 | 190 | 84.8 | Plus |
X | 23527363 | X | 2433683..2433761 | 1647..1575 | 190 | 84.8 | Minus |
X | 23527363 | X | 6960414..6960457 | 1294..1337 | 160 | 90.9 | Plus |
X | 23527363 | X | 2433780..2433823 | 1337..1294 | 160 | 90.9 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dtei\I-element | 5386 | Dtei\I-element DTEII 5386bp | 390..484 | 821..917 | 128 | 64.6 | Plus |
gypsy2 | 6841 | gypsy2 GYPSY2 6841bp | 424..623 | 504..708 | 120 | 57.1 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1076..1120 | 1047..1091 | 117 | 73.3 | Plus |
gypsy2 | 6841 | gypsy2 GYPSY2 6841bp | 394..432 | 512..550 | 114 | 76.9 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 4643685..4645223 | 732..2275 | 96 | <- | Minus |
chr3R | 4645888..4646615 | 1..731 | 95 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9821-RA | 1..858 | 1275..2132 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9821-RA | 1..858 | 1275..2132 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9821-RA | 1..858 | 1275..2132 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9821-RA | 1..858 | 1275..2132 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9821-RA | 1..858 | 1275..2132 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9821-RA | 1..2331 | 1..2333 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9821-RA | 1..2331 | 1..2333 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9821-RA | 27..2357 | 1..2333 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9821-RA | 1..2331 | 1..2333 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9821-RA | 27..2357 | 1..2333 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8817662..8819263 | 732..2333 | 100 | <- | Minus |
3R | 8819928..8820656 | 1..731 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8817662..8819263 | 732..2333 | 100 | <- | Minus |
3R | 8819928..8820656 | 1..731 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8817662..8819263 | 732..2333 | 100 | <- | Minus |
3R | 8819928..8820656 | 1..731 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 4643384..4644985 | 732..2333 | 100 | <- | Minus |
arm_3R | 4645650..4646378 | 1..731 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8558493..8560094 | 732..2333 | 100 | <- | Minus |
3R | 8560759..8561487 | 1..731 | 99 | Minus |
Translation from 1274 to 2131
> LD47990.pep MTYSHNSVRNNIRMTTASATKSIRLKKGAASATSASNSSTPSPTSAPVSP TSVSASAPATPLVTAHSNSIASSTNNAQFLSSSPTSLGFGLGLSALATPP NQRQRQLQSQSTGSKNKYQQSQQQRQSPQQQQGSSVGGGGFFFANNNRRN GGGRSPQGAMQVRQSPATILGGGFSPGIVGGSARKQRKSPSLGGKISPQH QMQQHPLIPTALTHFAGSKCFDAPAPTALPKPPQHWTLSRSEGKLPMMMP SMPKFQVPMQTGRSKRNLLDDFDTHNLKLLLNVQS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16827-PA | 291 | GF16827-PA | 1..291 | 1..285 | 647 | 66.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17415-PA | 272 | GG17415-PA | 1..272 | 14..285 | 842 | 89.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19331-PA | 328 | GH19331-PA | 1..328 | 1..285 | 541 | 50.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
aqz-PD | 285 | CG9821-PD | 1..285 | 1..285 | 1462 | 100 | Plus |
aqz-PC | 285 | CG9821-PC | 1..285 | 1..285 | 1462 | 100 | Plus |
aqz-PA | 285 | CG9821-PA | 1..285 | 1..285 | 1462 | 100 | Plus |
aqz-PB | 285 | CG9821-PB | 1..285 | 1..285 | 1462 | 100 | Plus |
CG32797-PA | 202 | CG32797-PA | 15..167 | 101..276 | 518 | 65.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23941-PA | 303 | GI23941-PA | 1..303 | 1..285 | 592 | 51.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12120-PA | 309 | GL12120-PA | 159..309 | 148..285 | 467 | 68.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA22058-PA | 309 | GA22058-PA | 159..309 | 148..285 | 467 | 68.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26301-PA | 277 | GM26301-PA | 1..277 | 14..285 | 1346 | 97.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23730-PA | 299 | GJ23730-PA | 154..299 | 162..285 | 417 | 61.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11819-PA | 311 | GK11819-PA | 1..311 | 1..285 | 537 | 50.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24815-PA | 284 | GE24815-PA | 1..284 | 1..285 | 1350 | 95.2 | Plus |
Translation from 1274 to 2131
> LD47990.hyp MTYSHNSVRNNIRMTTASATKSIRLKKGAASATSASNSSTPSPTSAPVSP TSVSASAPATPLVTAHSNSIASSTNNAQFLSSSPTSLGFGLGLSALATPP NQRQRQLQSQSTGSKNKYQQSQQQRQSPQQQQGSSVGGGGFFFANNNRRN GGGRSPQGAMQVRQSPATILGGGFSPGIVGGSARKQRKSPSLGGKISPQH QMQQHPLIPTALTHFAGSKCFDAPAPTALPKPPQHWTLSRSEGKLPMMMP SMPKFQVPMQTGRSKRNLLDDFDTHNLKLLLNVQS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG9821-PD | 285 | CG9821-PD | 1..285 | 1..285 | 1462 | 100 | Plus |
CG9821-PC | 285 | CG9821-PC | 1..285 | 1..285 | 1462 | 100 | Plus |
CG9821-PA | 285 | CG9821-PA | 1..285 | 1..285 | 1462 | 100 | Plus |
CG9821-PB | 285 | CG9821-PB | 1..285 | 1..285 | 1462 | 100 | Plus |
CG32797-PA | 202 | CG32797-PA | 15..167 | 101..276 | 518 | 65.4 | Plus |