Clone LD48048 Report

Search the DGRC for LD48048

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:480
Well:48
Vector:pOT2
Associated Gene/TranscriptHerp-RB
Protein status:LD48048.pep: wuzgold
Preliminary Size:2438
Sequenced Size:2384

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14536 2001-01-01 Release 2 assignment
CG14536 2001-11-09 Blastp of sequenced clone
CG14536 2003-01-01 Sim4 clustering to Release 3
Herp 2008-04-29 Release 5.5 accounting
Herp 2008-08-15 Release 5.9 accounting
Herp 2008-12-18 5.12 accounting

Clone Sequence Records

LD48048.complete Sequence

2384 bp (2384 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069709

> LD48048.complete
TCATGCACTTGGTCTATGCCAAATCGATGGGTCGGAACTGGGAACTGGGA
TTAATTTGGTTACGGTTAGAAAGTGATAAGATTTTTGGACATATTCACGC
TCCACTCATGTGCCAAGTTTTTTATGTACATATGTACATCCCACATATCA
ATATCACTGATATATACTAAAGATTCAGATCATTGCAGGCAGAAAAAATA
CATTAGCACTCTTTATTTCCAGAGCAAATCAAGTAGAATTTATAAAAATT
TATTTAGTTTCAAGTATCATTTCCATAAAGTCAACTGACAAGTACAAGTT
GTTATCTCTTGGAGTGTGCAAATAAATAGATTTAGGCACTGTTTGATAGT
ATAAATTTCGCGCGGAGGTAAAAGCAACAATGAGTTATCTCTAGGTTCCC
TCTGAATACCTATAATGTGAAATTTTATGTTTTATGTTTTGACCACTATA
ACTATTTCTTTCCATTTTTTCTGTAGTTAATCCAGGACCAGAAACTTATT
TACTCGGGCAAGCTATTAGATGACTCCCAAAAGATATCTGAGGTGATACG
CAGCTACAAGGATGTCTACCAACAGCACCACATATTTCACTTGGTGTGTG
CCAGCAAGCAAGTGATAAGGCCGGCTGCCAAAGCCCCCACTGTTCCGCAG
AAGGATGCGGTTCCAGCTGGGCCCGAGGTCACTGGGAATGCAAATGAGCT
GCGACAACGTCATGCTCCACATCAGCAGCAGGCACAGCAGGGCAACGCTG
GACCACACGTGACGGGTGACATCGGTTTGGCCAATCCCTGGACACACTTC
TGGCAGCAGAGCCAGGGAGCAGCACCTGCTGCCAATGCCAGTGCCAGTCC
CCATGCTTTGTTCCAGCAGCAGGCGCTCATCTACAACGCCTGGATGCAGC
AGGCTTACGCGCAGTACATGCAGCAGTTGACTCTACGTTCTACGTTGCCC
GGTTCGAACCAATCTGGCTTGCCGCCACCGACTCAACCCCTGTTGCCCTC
AGTCCCACTGATTGCTGGGCGAAACTTCGGGGAGGTACAACAAGTGGCAG
GAGCAGCTGCTGCCCCAGCGGCACAGGTACCTGCTGATCCTCAGATTAAT
GGAGCGCCGCAGAACAGAAATTTTCCCAACATTCAGGAGGAACCGGAAAT
GCACGACTGGCTGGATAGTTTCTTTAGCTTTACGCGATTGGCCATTTTTG
TGACTGTCCTGTACTTTAACTCCTCAGCGCTGCGTTGTTTACTGGTGGTG
CTCATCGCGGGTGCGATTTATCTATATCACATTGGTGTCCTTCGACGTCG
CCGCGAGCGGAACAATAACAACATAAATCGTAACAATAATGCTGGCGATG
CGGCCGCCTTTGCTGCAGTGCAGCAAATTCAGCGCATGATGGATGCGGCC
GTGCAGCGGGAGAACAACGATCCCCAGGCGGCCAATGAGCCTGGTGCAGT
GCCAGCGGCTGGACCTGCTGCTGCTGGTGAACAAGATGCAATCGATGCAC
CTCCGGCTGGGGCTCCCGTTGCTCCAGCATCCGCTGCTAATCCAGAACCG
ACTGACGTTTCCGCGGAAGCTGTGGAACCACCAAATGCCAATAATTCTGT
GATTTCCGTTGTGCGCACCTTTGTCATCACGTTCTTCACCTCGCTGCTGC
CCGAGGCGCCGGCGCTCTAGAGGATCGAACTGTACGTTATACAGAGGGAC
GTGTTTGACCATCCACAAACCAGCTTTACAGCTTTACGGCTTTCCTCTTT
TAAAACTCCCATAATCAAACTGTTATTCCGTTTTCCTTTTGAGTTTTGTG
CATACCTGAGAATGTAGCAAAAACAAACAATTTGTTTTACTAGCTGTAAT
AATCATGTATATTTATTTCCGAGTGTTAGCCAAGTTACAACATGGTGACT
GCTGCCTCAATAGCTCGTAGAATTTTAGATATCTAAGAACGTACTCTGTT
TTTGATGTGAATAGTAGAATGTTTATAATCTGCACTGCAATCTGTGCTAG
AGACGAACCTATGAAACCAAGATGCAATTAAAATAAAACGTATGCTTTAA
CACCAAAAACCGAAATCGAAAAGTGGTGTTTACAAGGTGCAATTTTATCT
ATAAAAAATATATCTACGATTTAAATGAAGAACATACTGTTTTTAAATGT
TTTCAACATCATTGGCATTGTTTTTAAAATCTTAAAAGAATCTTTAATTT
AATAACATATAGACATATGAACATATGCATAGACACATATTGACTATTAA
AAAATATATTTTTAAAATTTAAAATGTTATTATTTTAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD48048.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:59:40
Subject Length Description Subject Range Query Range Score Percent Strand
Herp-RB 2423 Herp-RB 92..2380 1..2289 11445 100 Plus
Herp-RA 2614 Herp-RA 758..2571 476..2289 9070 100 Plus
Herp.a 2345 Herp.a 538..2342 485..2289 9025 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:53:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 7795398..7796403 2286..1274 4820 98.6 Minus
chr2L 23010047 chr2L 7797240..7798177 937..1 4640 99.9 Minus
chr2L 23010047 chr2L 7796474..7796810 1273..937 1640 99.1 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:45:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:53:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7796311..7797326 2289..1274 5080 100 Minus
2L 23513712 2L 7798163..7799099 937..1 4685 100 Minus
2L 23513712 2L 7797397..7797733 1273..937 1685 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:24:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7796311..7797326 2289..1274 5080 100 Minus
2L 23513712 2L 7798163..7799099 937..1 4685 100 Minus
2L 23513712 2L 7797397..7797733 1273..937 1685 100 Minus
Blast to na_te.dros performed 2019-03-15 13:53:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Paris 1730 Dvir\Paris TV1 1730bp Derived from Z49253. 49..109 422..481 140 72.1 Plus
Dvir\Paris 1730 Dvir\Paris TV1 1730bp Derived from Z49253. 1622..1682 481..422 140 72.1 Minus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 581..722 1404..1545 124 56.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2347..2419 1538..1466 122 63 Minus
Juan 4236 Juan JUAN 4236bp 3709..3801 334..243 120 60.2 Minus
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 2607..2673 328..393 116 67.6 Plus

LD48048.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:54:41 Download gff for LD48048.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 7795440..7796403 1274..2244 98 <- Minus
chr2L 7796474..7796809 938..1273 99 <- Minus
chr2L 7797240..7798177 1..937 99   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:32:32 Download gff for LD48048.complete
Subject Subject Range Query Range Percent Splice Strand
Herp-RA 204..1398 476..1670 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:16:05 Download gff for LD48048.complete
Subject Subject Range Query Range Percent Splice Strand
Herp-RA 204..1398 476..1670 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:00:12 Download gff for LD48048.complete
Subject Subject Range Query Range Percent Splice Strand
Herp-RA 204..1398 476..1670 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:44:14 Download gff for LD48048.complete
Subject Subject Range Query Range Percent Splice Strand
Herp-RA 204..1398 476..1670 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:11:19 Download gff for LD48048.complete
Subject Subject Range Query Range Percent Splice Strand
Herp-RB 1..2284 3..2286 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:32:32 Download gff for LD48048.complete
Subject Subject Range Query Range Percent Splice Strand
Herp-RB 1..2284 3..2286 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:16:05 Download gff for LD48048.complete
Subject Subject Range Query Range Percent Splice Strand
Herp-RC 750..2560 476..2286 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:00:12 Download gff for LD48048.complete
Subject Subject Range Query Range Percent Splice Strand
Herp-RB 1..2284 3..2286 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:44:14 Download gff for LD48048.complete
Subject Subject Range Query Range Percent Splice Strand
Herp-RC 750..2560 476..2286 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:54:41 Download gff for LD48048.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7796314..7797326 1274..2286 100 <- Minus
2L 7797397..7797732 938..1273 100 <- Minus
2L 7798163..7799099 1..937 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:54:41 Download gff for LD48048.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7796314..7797326 1274..2286 100 <- Minus
2L 7797397..7797732 938..1273 100 <- Minus
2L 7798163..7799099 1..937 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:54:41 Download gff for LD48048.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7796314..7797326 1274..2286 100 <- Minus
2L 7797397..7797732 938..1273 100 <- Minus
2L 7798163..7799099 1..937 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:16:05 Download gff for LD48048.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7796314..7797326 1274..2286 100 <- Minus
arm_2L 7797397..7797732 938..1273 100 <- Minus
arm_2L 7798163..7799099 1..937 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:36:50 Download gff for LD48048.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7796314..7797326 1274..2286 100 <- Minus
2L 7797397..7797732 938..1273 100 <- Minus
2L 7798163..7799099 1..937 100   Minus

LD48048.pep Sequence

Translation from 893 to 1669

> LD48048.pep
MQQAYAQYMQQLTLRSTLPGSNQSGLPPPTQPLLPSVPLIAGRNFGEVQQ
VAGAAAAPAAQVPADPQINGAPQNRNFPNIQEEPEMHDWLDSFFSFTRLA
IFVTVLYFNSSALRCLLVVLIAGAIYLYHIGVLRRRRERNNNNINRNNNA
GDAAAFAAVQQIQRMMDAAVQRENNDPQAANEPGAVPAAGPAAAGEQDAI
DAPPAGAPVAPASAANPEPTDVSAEAVEPPNANNSVISVVRTFVITFFTS
LLPEAPAL*

LD48048.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:22:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22841-PA 487 GF22841-PA 230..487 1..258 570 69.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:22:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23506-PA 472 GG23506-PA 219..472 12..258 811 88.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:22:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11381-PA 496 GH11381-PA 221..496 1..258 400 51.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:39:16
Subject Length Description Subject Range Query Range Score Percent Strand
Herp-PC 465 CG14536-PC 208..465 1..258 1317 100 Plus
Herp-PA 465 CG14536-PA 208..465 1..258 1317 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:22:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18085-PA 528 GI18085-PA 260..528 1..258 423 51.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:22:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18849-PA 478 GL18849-PA 285..478 76..258 470 70.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:22:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13061-PA 478 GA13061-PA 285..478 76..258 470 70.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:22:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13309-PA 465 GM13309-PA 219..465 12..258 823 95.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:22:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22467-PA 465 GD22467-PA 208..465 1..258 1276 96.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:22:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16764-PA 491 GJ16764-PA 235..491 1..258 427 52.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:22:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15302-PA 482 GK15302-PA 304..482 73..258 513 69.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:22:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18333-PA 462 GE18333-PA 221..462 12..258 736 85.1 Plus

LD48048.hyp Sequence

Translation from 893 to 1669

> LD48048.hyp
MQQAYAQYMQQLTLRSTLPGSNQSGLPPPTQPLLPSVPLIAGRNFGEVQQ
VAGAAAAPAAQVPADPQINGAPQNRNFPNIQEEPEMHDWLDSFFSFTRLA
IFVTVLYFNSSALRCLLVVLIAGAIYLYHIGVLRRRRERNNNNINRNNNA
GDAAAFAAVQQIQRMMDAAVQRENNDPQAANEPGAVPAAGPAAAGEQDAI
DAPPAGAPVAPASAANPEPTDVSAEAVEPPNANNSVISVVRTFVITFFTS
LLPEAPAL*

LD48048.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:55:40
Subject Length Description Subject Range Query Range Score Percent Strand
Herp-PC 465 CG14536-PC 208..465 1..258 1317 100 Plus
Herp-PA 465 CG14536-PA 208..465 1..258 1317 100 Plus