BDGP Sequence Production Resources |
Search the DGRC for LD48048
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 480 |
Well: | 48 |
Vector: | pOT2 |
Associated Gene/Transcript | Herp-RB |
Protein status: | LD48048.pep: wuzgold |
Preliminary Size: | 2438 |
Sequenced Size: | 2384 |
Gene | Date | Evidence |
---|---|---|
CG14536 | 2001-01-01 | Release 2 assignment |
CG14536 | 2001-11-09 | Blastp of sequenced clone |
CG14536 | 2003-01-01 | Sim4 clustering to Release 3 |
Herp | 2008-04-29 | Release 5.5 accounting |
Herp | 2008-08-15 | Release 5.9 accounting |
Herp | 2008-12-18 | 5.12 accounting |
2384 bp (2384 high quality bases) assembled on 2001-11-09
GenBank Submission: AY069709
> LD48048.complete TCATGCACTTGGTCTATGCCAAATCGATGGGTCGGAACTGGGAACTGGGA TTAATTTGGTTACGGTTAGAAAGTGATAAGATTTTTGGACATATTCACGC TCCACTCATGTGCCAAGTTTTTTATGTACATATGTACATCCCACATATCA ATATCACTGATATATACTAAAGATTCAGATCATTGCAGGCAGAAAAAATA CATTAGCACTCTTTATTTCCAGAGCAAATCAAGTAGAATTTATAAAAATT TATTTAGTTTCAAGTATCATTTCCATAAAGTCAACTGACAAGTACAAGTT GTTATCTCTTGGAGTGTGCAAATAAATAGATTTAGGCACTGTTTGATAGT ATAAATTTCGCGCGGAGGTAAAAGCAACAATGAGTTATCTCTAGGTTCCC TCTGAATACCTATAATGTGAAATTTTATGTTTTATGTTTTGACCACTATA ACTATTTCTTTCCATTTTTTCTGTAGTTAATCCAGGACCAGAAACTTATT TACTCGGGCAAGCTATTAGATGACTCCCAAAAGATATCTGAGGTGATACG CAGCTACAAGGATGTCTACCAACAGCACCACATATTTCACTTGGTGTGTG CCAGCAAGCAAGTGATAAGGCCGGCTGCCAAAGCCCCCACTGTTCCGCAG AAGGATGCGGTTCCAGCTGGGCCCGAGGTCACTGGGAATGCAAATGAGCT GCGACAACGTCATGCTCCACATCAGCAGCAGGCACAGCAGGGCAACGCTG GACCACACGTGACGGGTGACATCGGTTTGGCCAATCCCTGGACACACTTC TGGCAGCAGAGCCAGGGAGCAGCACCTGCTGCCAATGCCAGTGCCAGTCC CCATGCTTTGTTCCAGCAGCAGGCGCTCATCTACAACGCCTGGATGCAGC AGGCTTACGCGCAGTACATGCAGCAGTTGACTCTACGTTCTACGTTGCCC GGTTCGAACCAATCTGGCTTGCCGCCACCGACTCAACCCCTGTTGCCCTC AGTCCCACTGATTGCTGGGCGAAACTTCGGGGAGGTACAACAAGTGGCAG GAGCAGCTGCTGCCCCAGCGGCACAGGTACCTGCTGATCCTCAGATTAAT GGAGCGCCGCAGAACAGAAATTTTCCCAACATTCAGGAGGAACCGGAAAT GCACGACTGGCTGGATAGTTTCTTTAGCTTTACGCGATTGGCCATTTTTG TGACTGTCCTGTACTTTAACTCCTCAGCGCTGCGTTGTTTACTGGTGGTG CTCATCGCGGGTGCGATTTATCTATATCACATTGGTGTCCTTCGACGTCG CCGCGAGCGGAACAATAACAACATAAATCGTAACAATAATGCTGGCGATG CGGCCGCCTTTGCTGCAGTGCAGCAAATTCAGCGCATGATGGATGCGGCC GTGCAGCGGGAGAACAACGATCCCCAGGCGGCCAATGAGCCTGGTGCAGT GCCAGCGGCTGGACCTGCTGCTGCTGGTGAACAAGATGCAATCGATGCAC CTCCGGCTGGGGCTCCCGTTGCTCCAGCATCCGCTGCTAATCCAGAACCG ACTGACGTTTCCGCGGAAGCTGTGGAACCACCAAATGCCAATAATTCTGT GATTTCCGTTGTGCGCACCTTTGTCATCACGTTCTTCACCTCGCTGCTGC CCGAGGCGCCGGCGCTCTAGAGGATCGAACTGTACGTTATACAGAGGGAC GTGTTTGACCATCCACAAACCAGCTTTACAGCTTTACGGCTTTCCTCTTT TAAAACTCCCATAATCAAACTGTTATTCCGTTTTCCTTTTGAGTTTTGTG CATACCTGAGAATGTAGCAAAAACAAACAATTTGTTTTACTAGCTGTAAT AATCATGTATATTTATTTCCGAGTGTTAGCCAAGTTACAACATGGTGACT GCTGCCTCAATAGCTCGTAGAATTTTAGATATCTAAGAACGTACTCTGTT TTTGATGTGAATAGTAGAATGTTTATAATCTGCACTGCAATCTGTGCTAG AGACGAACCTATGAAACCAAGATGCAATTAAAATAAAACGTATGCTTTAA CACCAAAAACCGAAATCGAAAAGTGGTGTTTACAAGGTGCAATTTTATCT ATAAAAAATATATCTACGATTTAAATGAAGAACATACTGTTTTTAAATGT TTTCAACATCATTGGCATTGTTTTTAAAATCTTAAAAGAATCTTTAATTT AATAACATATAGACATATGAACATATGCATAGACACATATTGACTATTAA AAAATATATTTTTAAAATTTAAAATGTTATTATTTTAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 7795398..7796403 | 2286..1274 | 4820 | 98.6 | Minus |
chr2L | 23010047 | chr2L | 7797240..7798177 | 937..1 | 4640 | 99.9 | Minus |
chr2L | 23010047 | chr2L | 7796474..7796810 | 1273..937 | 1640 | 99.1 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 7796311..7797326 | 2289..1274 | 5080 | 100 | Minus |
2L | 23513712 | 2L | 7798163..7799099 | 937..1 | 4685 | 100 | Minus |
2L | 23513712 | 2L | 7797397..7797733 | 1273..937 | 1685 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 7796311..7797326 | 2289..1274 | 5080 | 100 | Minus |
2L | 23513712 | 2L | 7798163..7799099 | 937..1 | 4685 | 100 | Minus |
2L | 23513712 | 2L | 7797397..7797733 | 1273..937 | 1685 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\Paris | 1730 | Dvir\Paris TV1 1730bp Derived from Z49253. | 49..109 | 422..481 | 140 | 72.1 | Plus |
Dvir\Paris | 1730 | Dvir\Paris TV1 1730bp Derived from Z49253. | 1622..1682 | 481..422 | 140 | 72.1 | Minus |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 581..722 | 1404..1545 | 124 | 56.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2419 | 1538..1466 | 122 | 63 | Minus |
Juan | 4236 | Juan JUAN 4236bp | 3709..3801 | 334..243 | 120 | 60.2 | Minus |
17.6 | 7439 | 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). | 2607..2673 | 328..393 | 116 | 67.6 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 7795440..7796403 | 1274..2244 | 98 | <- | Minus |
chr2L | 7796474..7796809 | 938..1273 | 99 | <- | Minus |
chr2L | 7797240..7798177 | 1..937 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Herp-RA | 204..1398 | 476..1670 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Herp-RA | 204..1398 | 476..1670 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Herp-RA | 204..1398 | 476..1670 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Herp-RA | 204..1398 | 476..1670 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Herp-RB | 1..2284 | 3..2286 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Herp-RB | 1..2284 | 3..2286 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Herp-RC | 750..2560 | 476..2286 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Herp-RB | 1..2284 | 3..2286 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Herp-RC | 750..2560 | 476..2286 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 7796314..7797326 | 1274..2286 | 100 | <- | Minus |
2L | 7797397..7797732 | 938..1273 | 100 | <- | Minus |
2L | 7798163..7799099 | 1..937 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 7796314..7797326 | 1274..2286 | 100 | <- | Minus |
2L | 7797397..7797732 | 938..1273 | 100 | <- | Minus |
2L | 7798163..7799099 | 1..937 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 7796314..7797326 | 1274..2286 | 100 | <- | Minus |
2L | 7797397..7797732 | 938..1273 | 100 | <- | Minus |
2L | 7798163..7799099 | 1..937 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 7796314..7797326 | 1274..2286 | 100 | <- | Minus |
arm_2L | 7797397..7797732 | 938..1273 | 100 | <- | Minus |
arm_2L | 7798163..7799099 | 1..937 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 7796314..7797326 | 1274..2286 | 100 | <- | Minus |
2L | 7797397..7797732 | 938..1273 | 100 | <- | Minus |
2L | 7798163..7799099 | 1..937 | 100 | Minus |
Translation from 893 to 1669
> LD48048.pep MQQAYAQYMQQLTLRSTLPGSNQSGLPPPTQPLLPSVPLIAGRNFGEVQQ VAGAAAAPAAQVPADPQINGAPQNRNFPNIQEEPEMHDWLDSFFSFTRLA IFVTVLYFNSSALRCLLVVLIAGAIYLYHIGVLRRRRERNNNNINRNNNA GDAAAFAAVQQIQRMMDAAVQRENNDPQAANEPGAVPAAGPAAAGEQDAI DAPPAGAPVAPASAANPEPTDVSAEAVEPPNANNSVISVVRTFVITFFTS LLPEAPAL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22841-PA | 487 | GF22841-PA | 230..487 | 1..258 | 570 | 69.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23506-PA | 472 | GG23506-PA | 219..472 | 12..258 | 811 | 88.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11381-PA | 496 | GH11381-PA | 221..496 | 1..258 | 400 | 51.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Herp-PC | 465 | CG14536-PC | 208..465 | 1..258 | 1317 | 100 | Plus |
Herp-PA | 465 | CG14536-PA | 208..465 | 1..258 | 1317 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18085-PA | 528 | GI18085-PA | 260..528 | 1..258 | 423 | 51.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18849-PA | 478 | GL18849-PA | 285..478 | 76..258 | 470 | 70.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA13061-PA | 478 | GA13061-PA | 285..478 | 76..258 | 470 | 70.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13309-PA | 465 | GM13309-PA | 219..465 | 12..258 | 823 | 95.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22467-PA | 465 | GD22467-PA | 208..465 | 1..258 | 1276 | 96.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16764-PA | 491 | GJ16764-PA | 235..491 | 1..258 | 427 | 52.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15302-PA | 482 | GK15302-PA | 304..482 | 73..258 | 513 | 69.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE18333-PA | 462 | GE18333-PA | 221..462 | 12..258 | 736 | 85.1 | Plus |
Translation from 893 to 1669
> LD48048.hyp MQQAYAQYMQQLTLRSTLPGSNQSGLPPPTQPLLPSVPLIAGRNFGEVQQ VAGAAAAPAAQVPADPQINGAPQNRNFPNIQEEPEMHDWLDSFFSFTRLA IFVTVLYFNSSALRCLLVVLIAGAIYLYHIGVLRRRRERNNNNINRNNNA GDAAAFAAVQQIQRMMDAAVQRENNDPQAANEPGAVPAAGPAAAGEQDAI DAPPAGAPVAPASAANPEPTDVSAEAVEPPNANNSVISVVRTFVITFFTS LLPEAPAL*