Clone LD48066 Report

Search the DGRC for LD48066

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:480
Well:66
Vector:pOT2
Associated Gene/TranscriptCG13604-RB
Protein status:LD48066.pep: gold
Preliminary Size:3047
Sequenced Size:2557

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13604 2002-11-17 Blastp of sequenced clone
CG13604 2008-04-29 Release 5.5 accounting
CG13604 2008-08-15 Release 5.9 accounting
CG13604 2008-12-18 5.12 accounting

Clone Sequence Records

LD48066.complete Sequence

2557 bp (2557 high quality bases) assembled on 2002-11-17

GenBank Submission: BT003239

> LD48066.complete
TCCTTCTGTTGGTTGCACTCTCTTTGGGTTGTTTTGGTTTACCTTTCTCA
CGTTCTGTTCGATTCGGTTGATGGTTTTCCATTTTTCGGAGTGGCTTACA
CGGTTATGTTGTTCTCCTCTCTTCCTGCACACTTCTGGATAATCTGGGAT
ATGCTGCACAGTCATTAGCGATACCTATGAGCAGTTGGACGCCATTGTGG
CCTGCTTTCCCTGGTGCGGTGCTGTCTCCTCGGGCACCCGCTGCATTCCG
CGCAGCAGTCGATCCATCTCACTCGAGCCACACGTTAAGAGCCTGCACCT
GACGCTTGCCTACCAGTTCCCGCAGGCACAGTTTAATGCACTGAAAGCAC
TCGTGGAGACCTTAGACGCCAGCTGCGCTTCCAATTGGGAACTTCGTCTA
TATTCCCGCGATCCTCGGCTCGCCACCAAACAAGTTCAAAAGGTAGTTTA
TCCACACAACCCGCACGAGACGGATGAACTGGAGCTCCGAATCGGCGATT
ACATCTATTTGAATACCGAGGTAGTAGACAGTTCCAGTGACGGTTGGGCC
GAAGGCATATCTTGGTTGACCGGAAGCACCGGTCATTTGCCCGTCAATTA
CACCGAACGCACCGCAGAATCGGACGCCTGGACCCTGCATCGTGTGGTCC
AGCTCTCCAAGAGCGTAGCTTCATCATTAACTTCCGCCGAGGACTTGGAC
ATTGTGGACGGACGCAGTATATCAACGGAGCCCGACGATCGTCAGAACAC
AGCACATCCTGATATAATTGAAGGCTCTTCGTTTGAGGAATCCGAACAGA
GCGTGGAGAAGTATTTGAGACAGACTTTGAAGCCCTGCCTGGAACTACCC
TCAGTGCAATTGCTAAACAGCCACAACTTGACCCATCAGCATAACCCTAA
CACGCCTACGATCGAGATAACGACCAATATGTCTTCTTCCTCCACCTCCA
TGTCCAAGCAACCGGTGGACGAGATCTTGGTGGAACCACCGGCAGCCCAG
CCTCCGCGTCCAGATGACACACTTAGTGTACACTCGGACCACTCCTTGCA
TCCCGGATCCCTTGACGCCTCGCATGCCAAGAACAGAAAGATCTACATTA
TGCGGCATGGCGAGCGAGTCGACTTTACTTTTGGAACATGGATTCCATAT
TGCTTCGATGAGTTTGGAAATTACATGAGGAAGGATTTAAACATGCCGAA
GACGCTGCCTCGTCGGAAGAACAGTCCGGAGGGCTGGCAGAATGATTCTC
CGCTGACAAATGTGGGTGTCTATCAGGCCAATCTTATTGGTCAAGCTTTG
CTGGAGGCTCAAGTGCAGATCGACCATGTTTACTGTTCGCCCTCGTATCG
CTGCATCCAGACTTGCACCAGTGCGCTTGAGGGGCTGAAGCTTACGGGCA
AGCAAAAAATCAAACTGGAGCCGGGCCTGTTTGAGTGGATGGCCTGGTAT
CCGAGCGGTGTACCCGACTGGCTGACTAAGAACGAGCTGACCGAGGCCAA
GTTCGACGTTGATTTGGATTATGAGCCGGTGCAGCCAGCGTCTGAGCTAA
CTGCTCGCCTAAAGGAGTCCACCGAGCAGTTTTATGAACGTAACCATGAC
GTTATCCTCCAGCTATTGGAGCAGACAACTGGAAATATTTTGGTTGTTGC
CCATGCCACCACACTGGACACTTGTTCCCGTCAACTGACCGGTGGAGTTC
CACGCAGCACGAACGAATTGCGCCAAGTCATCCACAAGATCCCCTACTGC
AGCCTGGCAACGGTGGAACAGGTGGACGGCGTCTGGAAGCTGGTTGAACC
CGAATGTCTTCCGGTGACGCACTCAAAGAATCCGCGGTTCGAGTGGAACG
CCTTGTCGGCCACCTAGTGCCAGTGCTTAGAGCAGTTTCTCTGCAAGCAT
TGAGACTGAGACTCAACTCGATTGGGACGGACCTGGAGGTGAATCACACG
CTGAAGAAACTATACGTAAATTTTTTGTTCGCTTAGCTATTTAAAGTACG
TATTGATTTACTGTTTAGAAATTGGCGCCGCATTAAGTTGATTGTACTGC
CATACAAATTTTAAAGTAATTTATATGTACACTTATGATGCAAACCGATG
GAATGCGATTTTGCTGCGGTGTATAAACAATCCATCTATTATAATTGCAC
TGCTTATTGAGAAGCCAGCGCGACGGACTCATACTTTATTGCAATCAATG
CGATCTATTGACTATATATATTGAATATATACATTTATACCGTATGCCAG
TAATTATACTAATTGAGCGCTAGCTCGCCGCTTTAGCCATAGACTAACTT
GCCCTGTTACTAGCTTAGTTGTTAGATTGTTTGATTAGCCTTGCTGCGTA
ACGCAGTTTTTTTGTAGCCATTTATCCAAGAGGCAGACTTTTCTTAGCAA
CTTGTTGAGACTACTCCGTACGTAAAGCCCAAACATATATCGATATTATC
GACTAGATTTAGAAGTACAAAACCATGTAACAACGCACAACATAATGGAA
CAATAAACAGTATACATTGAACACGTGTAATGCCAAAAAAAAAAAAAAAA
AAAAAAA

LD48066.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:32:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG13604-RB 2683 CG13604-RB 74..2610 1..2538 12650 99.9 Plus
CG13604-RA 3119 CG13604-RA 671..3046 162..2538 11845 99.9 Plus
CG13604-RC 2453 CG13604-RC 107..2380 264..2538 11335 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:46:10
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 19812181..19813085 2534..1629 4405 99.3 Minus
chr3R 27901430 chr3R 19813146..19814027 1628..747 4350 99.5 Minus
chr3R 27901430 chr3R 19814090..19814402 746..434 1565 100 Minus
chr3R 27901430 chr3R 19815149..19815411 263..1 1300 99.6 Minus
chr3R 27901430 chr3R 19814458..19814630 436..264 865 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:45:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:46:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23988802..23989710 2538..1629 4500 99.9 Minus
3R 32079331 3R 23989771..23990652 1628..747 4410 100 Minus
3R 32079331 3R 23990715..23991027 746..434 1565 100 Minus
3R 32079331 3R 23991774..23992036 263..1 1315 100 Minus
3R 32079331 3R 23991083..23991255 436..264 865 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:08:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 23729633..23730541 2538..1629 4510 99.8 Minus
3R 31820162 3R 23730602..23731483 1628..747 4410 100 Minus
3R 31820162 3R 23731546..23731858 746..434 1565 100 Minus
3R 31820162 3R 23732605..23732867 263..1 1315 100 Minus
3R 31820162 3R 23731914..23732086 436..264 865 100 Minus
Blast to na_te.dros performed on 2019-03-16 20:46:08 has no hits.

LD48066.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:47:16 Download gff for LD48066.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 19812181..19813085 1629..2534 99 <- Minus
chr3R 19813146..19814027 747..1628 99 <- Minus
chr3R 19814090..19814402 434..746 100 <- Minus
chr3R 19814461..19814630 264..433 100 <- Minus
chr3R 19815149..19815411 1..263 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:32:40 Download gff for LD48066.complete
Subject Subject Range Query Range Percent Splice Strand
CG13604-RA 546..2256 154..1867 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:03:48 Download gff for LD48066.complete
Subject Subject Range Query Range Percent Splice Strand
CG13604-RA 546..2256 154..1867 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:27:47 Download gff for LD48066.complete
Subject Subject Range Query Range Percent Splice Strand
CG13604-RE 546..2292 154..1903 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:54:02 Download gff for LD48066.complete
Subject Subject Range Query Range Percent Splice Strand
CG13604-RA 546..2256 154..1867 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:52:57 Download gff for LD48066.complete
Subject Subject Range Query Range Percent Splice Strand
CG13604-RE 546..2292 154..1903 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:22:32 Download gff for LD48066.complete
Subject Subject Range Query Range Percent Splice Strand
CG13604-RB 1..2533 1..2534 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:03:48 Download gff for LD48066.complete
Subject Subject Range Query Range Percent Splice Strand
CG13604-RB 1..2533 1..2534 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:47 Download gff for LD48066.complete
Subject Subject Range Query Range Percent Splice Strand
CG13604-RB 1..2533 1..2534 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 17:07:52 Download gff for LD48066.complete
Subject Subject Range Query Range Percent Splice Strand
CG13604-RB 1..2533 1..2534 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:52:57 Download gff for LD48066.complete
Subject Subject Range Query Range Percent Splice Strand
CG13604-RB 1..2533 1..2534 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:47:16 Download gff for LD48066.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23988806..23989710 1629..2534 99 <- Minus
3R 23989771..23990652 747..1628 100 <- Minus
3R 23990715..23991027 434..746 100 <- Minus
3R 23991086..23991255 264..433 100 <- Minus
3R 23991774..23992036 1..263 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:47:16 Download gff for LD48066.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23988806..23989710 1629..2534 99 <- Minus
3R 23989771..23990652 747..1628 100 <- Minus
3R 23990715..23991027 434..746 100 <- Minus
3R 23991086..23991255 264..433 100 <- Minus
3R 23991774..23992036 1..263 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:47:16 Download gff for LD48066.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23988806..23989710 1629..2534 99 <- Minus
3R 23989771..23990652 747..1628 100 <- Minus
3R 23990715..23991027 434..746 100 <- Minus
3R 23991086..23991255 264..433 100 <- Minus
3R 23991774..23992036 1..263 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:47 Download gff for LD48066.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19816808..19816977 264..433 100 <- Minus
arm_3R 19817496..19817758 1..263 100   Minus
arm_3R 19815493..19816374 747..1628 100 <- Minus
arm_3R 19814528..19815432 1629..2534 99 <- Minus
arm_3R 19816437..19816749 434..746 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:26:17 Download gff for LD48066.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23729637..23730541 1629..2534 99 <- Minus
3R 23730602..23731483 747..1628 100 <- Minus
3R 23731546..23731858 434..746 100 <- Minus
3R 23731917..23732086 264..433 100 <- Minus
3R 23732605..23732867 1..263 100   Minus

LD48066.pep Sequence

Translation from 928 to 1866

> LD48066.pep
MSSSSTSMSKQPVDEILVEPPAAQPPRPDDTLSVHSDHSLHPGSLDASHA
KNRKIYIMRHGERVDFTFGTWIPYCFDEFGNYMRKDLNMPKTLPRRKNSP
EGWQNDSPLTNVGVYQANLIGQALLEAQVQIDHVYCSPSYRCIQTCTSAL
EGLKLTGKQKIKLEPGLFEWMAWYPSGVPDWLTKNELTEAKFDVDLDYEP
VQPASELTARLKESTEQFYERNHDVILQLLEQTTGNILVVAHATTLDTCS
RQLTGGVPRSTNELRQVIHKIPYCSLATVEQVDGVWKLVEPECLPVTHSK
NPRFEWNALSAT*

LD48066.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:47:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17972-PA 756 GF17972-PA 445..756 1..312 1543 93.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:47:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12383-PA 751 GG12383-PA 440..751 1..312 1658 97.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:47:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23562-PA 1040 GH23562-PA 726..1040 1..312 1459 82.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:06:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG13604-PE 763 CG13604-PE 440..751 1..312 1674 100 Plus
CG13604-PD 717 CG13604-PD 406..717 1..312 1674 100 Plus
CG13604-PC 312 CG13604-PC 1..312 1..312 1674 100 Plus
CG13604-PB 312 CG13604-PB 1..312 1..312 1674 100 Plus
CG13604-PA 751 CG13604-PA 440..751 1..312 1674 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:47:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23455-PA 757 GI23455-PA 447..757 4..312 1406 81.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:47:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24157-PA 753 GL24157-PA 442..753 1..312 1556 90.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:47:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12397-PB 719 GA12397-PB 408..719 1..312 1558 90.4 Plus
Dpse\GA12397-PA 753 GA12397-PA 442..753 1..312 1556 90.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:47:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23521-PA 653 GM23521-PA 342..653 1..312 1687 99 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:47:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18330-PA 709 GD18330-PA 398..709 1..312 1684 99 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:47:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22576-PA 758 GJ22576-PA 457..758 13..312 1403 82.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:47:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11599-PA 752 GK11599-PA 443..752 1..312 1448 86.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:47:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10837-PA 751 GE10837-PA 440..751 1..312 1667 98.1 Plus

LD48066.hyp Sequence

Translation from 928 to 1866

> LD48066.hyp
MSSSSTSMSKQPVDEILVEPPAAQPPRPDDTLSVHSDHSLHPGSLDASHA
KNRKIYIMRHGERVDFTFGTWIPYCFDEFGNYMRKDLNMPKTLPRRKNSP
EGWQNDSPLTNVGVYQANLIGQALLEAQVQIDHVYCSPSYRCIQTCTSAL
EGLKLTGKQKIKLEPGLFEWMAWYPSGVPDWLTKNELTEAKFDVDLDYEP
VQPASELTARLKESTEQFYERNHDVILQLLEQTTGNILVVAHATTLDTCS
RQLTGGVPRSTNELRQVIHKIPYCSLATVEQVDGVWKLVEPECLPVTHSK
NPRFEWNALSAT*

LD48066.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:52:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG13604-PC 312 CG13604-PC 1..312 1..312 1674 100 Plus
CG13604-PB 312 CG13604-PB 1..312 1..312 1674 100 Plus
CG13604-PD 717 CG13604-PD 406..717 1..312 1674 100 Plus
CG13604-PA 751 CG13604-PA 440..751 1..312 1674 100 Plus
CG13604-PE 763 CG13604-PE 440..751 1..312 1674 100 Plus