Clone LD48089 Report

Search the DGRC for LD48089

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:480
Well:89
Vector:pOT2
Associated Gene/TranscriptB4-RA
Protein status:LD48089.pep: gold
Preliminary Size:3866
Sequenced Size:4359

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9239 2001-01-01 Release 2 assignment
CG15638 2001-01-01 Release 2 assignment
CG9260 2001-01-01 Release 2 assignment
CG9263 2001-01-01 Release 2 assignment
CG9239 2001-09-19 Blastp of sequenced clone
CG9239 2003-01-01 Sim4 clustering to Release 3
B4 2008-04-29 Release 5.5 accounting
B4 2008-08-15 Release 5.9 accounting
B4 2008-12-18 5.12 accounting

Clone Sequence Records

LD48089.complete Sequence

4359 bp (4359 high quality bases) assembled on 2001-09-19

GenBank Submission: AY060445

> LD48089.complete
AGTGTTGCTGCGGGTGGACGTGCTCGCTTTCTCTGTCCGTTACCGTTACC
TCGTGTCTGCGTTCACGTATCCGTGTGTCTGTCCGCGTTCCCCGTCCGTG
TGTGGGTGTAGGTGCGAATGTGTGTGTGCCTTTGGTCGCGTGTCGTCGCC
GCTTTCATGTAAACGAAGATTGTGCAAAAGACGAAGTGTTAATCGACAAA
CAACAACAGCAACAACGCCGGAGAAAACAACATGTGAGAGGCGGCTCAAA
AAGTTAATTTAGCCAGTCGAAAAGATGGCCGCCAGGATGTGCAGCATCGC
TTCCATCGTCATCATCTAGATTTTAGATGCAGCAACAGCAGCAGCAGCAG
CACTCACAGATACACACGCATACCAATGCCGCTGGCAGCCAGACACTCGC
ACACCAATACCAATGCCAGTCCCTCTTAAAGGCTGCATGGATCCCATGTC
AAATTCATTTATGAGTTTTAGCACTGCAACAGACGAAGCTCATTCGAAGC
CCACCAAAAAGCATTTGGCTGTTGTTCCACGAAGTCAACAAAGAGAGACA
GCAGCAGCAGCAACGATCGAGGAGGGCGCCGCTGCAGTCGGACAAGTCTG
CTCAGTTGGTCGCTGAAAATCGGCATCGCGAGACGTACCGAGTTGGAATA
CATTCGTTTCGACGGCGGCGACGCGTCCGCTCGTTGCAGTGGCGCATTCA
TTTTTTTTTTTCGGTTTGATTGATTGCGATTATGAACGAGACCTTAAAGC
TGTCCGGACTCGGAATGCAGCGCACCAATATCGAGCTCGAGCGGCAGAGG
CACCTGGCCAACTGGCTGATGAACAGTAGACCGCACATGCCCGGCGGACC
AGCAGCAGCAACAACAACATCAGCGGCAGCAGCAACAACACCCACTGCAT
CAGCCACAAAGGGCGCAACAACAACAACAGCTACAACTACAAATCCTGGC
TCCACAGTGGGTGGAGCAGGCGCTGGCCCAGTGGGCGGCAACGGGGTCGC
AACAGCAGCAGCAGCGGGCGCACCCAGCAACAGCGTCGCAGCTGCAGCAG
CAGCTGCATGTAACGGTGGAGCAGCCGTTGGCGCCCATCACGGCCACCAT
TCGGCGGCTGGGGCGCGCAAGCCCAAACTGCGGCGCTTCAACTCCCACGA
CACCAGTTCGAATATGTTCTCGGTGGCCGATTTCGAGAACGCCCGCCTAG
CTCGCCGCAACGAGATCGAGCTGAACCAGCGGAGGGCACGACGCGTGCGC
GGCAGTGCCAACAACAGCACCTACGGCCTGGGATCGGGCTCAGGATTGCT
GGGAGGTGCCCATTCTGGATACTGTGACGCACTCAATGGCAGCGGCGATT
ACTCCACCGGGGACAGCAAGGCCTCCAAGGGCAGCAGCGAAGGTGCGCTG
ACAGCCATTGAGTTCCTTGAGCGGAATTCCCTGCCACGAGTCGTCCGCAT
TCTGCATGCGAGCAAGAGCTCAAACGAAACGCTGCAGTCCAGCTCATCGC
ATGGCTCCTCCACGGCGGCATCGAGCAGCTCCTCGACGGGAGCGAATCCG
TTTGGTTCTGGTGGCAGTGGTGGTGGAAACATTTCCAGTGGCAACATTGA
CACCGGCACCCATTCATCGTCCAGCGGAGGCAGCGCCACCGGAAACGGAA
CTGGCTCTGGTCCTGGTCTTAGTTCGGGCTCGGGTTCTGGTTCTGGTTCT
GGTCACCAGAACAACAACGGTCGCCACAGCAGCAACGGTGGCACTCCACC
CGGCCACGATGAGCTTTTTCTGCTCTACAGGCTGGTGCGACAGCGCAACA
TCTACCACGGACACAACGCCAAGACTCAGGCATCGCAGCGCAAGAAGACT
CTGCTCATTCCACAGGAGTTTCCGGGTTACTTTTCGATGCTAAGCGAGAA
GGGTCTCCCCACGGCCACACAATACGGATCTCTGATACAGCTGGTTCGGG
AACGGGTTTACAAGTTTGTCTCAGTGGACAACATGCCGGCGTTTACGGAA
TCCTCGCCCAACAGTACGAGCAGTCCAACGCACGAGGGATGCCTGCCCAT
AAACAAGGGACGACCACAGTACGTGAAAACGACGGCAAGGGGCGGGCAGG
TATTCCGTCTGTTGGCCGTCTTCGAGGATGGCAAACAGGATCAGGTCAAT
ATGTCGCAACATGGCAACGGCAATGCGACCAGGTCCCATGGCAGTGGGTA
CATGGGAAGGGAGAAGGAAAAGAACCGGTATGCCCAGCTGCTTAATGAAA
ACCGGCAGGTGTTGTACGTCCCACTGTCCACCAAGGGCAAGTTCTACGAG
ATTGAACCGGGAATTCCTCAGCTGCTTCAGAAACTGGGCGATGCGCAGCG
CAAGCTGAATCCGGAGTGCGTGCATCGTTTGAGTGCTTTGGTGACGGCGG
CCAAGCAGTTACCGCTAACACTGCGCTATATCTCCGGTCCAGGCGGACCC
GACATTCCCGAGCAGCTATGTATTAGTCAAGTGAGCAAGGAGGATGTGGT
TGTTGGCTGTTCCATTGAGGACGTCGATACCCAGACGCCCTTGCAGCTGA
GGAAGTTCTATCCCAGTCGAGATATTCAGCTGGTAAAAAGTTATTTAGGA
TTTGACTCCGAACAACGGATGCTCGCTAACACGAATGTGCAGAATATGCT
AAAGTTTTGTCAATTTAATTGCGATCCATTCCTGAAGCTCGTGGAGATTG
AGTTAATTCAGCGCTCGGAACGTTCGGGAAGCAAGAATCGAGAGGGGCTA
CGAATCTTGAAGCCACTGCATTTTCCAAAGATCCTGAGACGCGAGAAGAG
CTCCATGGCAGCAGCGCACGAAAAGGAGGATTCCATTATTTTCCTCAGCA
AATCGGATCTGGAGAATCTGGAAGCCAAGGAAGCGGCAGCTTCTGCTGCA
GCTCACTCGGAATCCAGTTTGAATCGCATCTCTGAGCGCATGCGTGTATT
CCAGTCTACCAAGAAGAAGTGGTTCGGAAAGCATCATCCGCAGCAACAGC
AACCACAAATAGAGAAACATCAATCTGACTTAGATCTCGATGAGCAGGCC
AAGCGAATGAGCATGGAGCGCTATACGGATATGTCTAAGCTTCTGCAGGA
GCGTTTTGGCTCGAATCCCGAACAGCCAGAGCAAGATGCTATCTCCCTAA
ACAGCACAGCAGCGTCCGACACCGAAACAACGATGCTGACTACCATGGAG
CCGAGGTCTCTGGACACAATGATGCAAAAGTCCATGTCCCTGCAGGATAT
TGAGCTTCTCAATGGTCAATGCAAGCAACGACCTGATTTGCTGGCCAGCC
ACAATCACAATGACGCCATCAGTGAGGCAGGTACCGAGCTGGAAGATGTG
GAGAATCAGACCCCACCTCCACAGTCCTTCATCACGGAGAAGCTGTACAA
CGAGTTTCACGTGAAGACCAGGCAGTATAGCAAGTCATCGTCCAGTTTGC
ACCAGTTACCTCTGTTTAGCTTGCCGCAAAAGTTGCAACTTCACGAGGCT
GAAAAGGAGAAGCGACATCTGATGTTGCTAAAGGCGCAGCAACAGGCGCT
GACCAAGGAACCGGTCACTGGAAGAAGGGCAGCCGGTGGAGTTTCTCTGT
TGGGAGGAGGACTCAACCAACTGGCGATATCGCCCGCATCGCTGGTGGAA
GACGACTTGCCCTACTCCAGTGTGCGCGATTCGCTTGTGATTTCCGGCGG
GGACTGCCTGCGATCGGAGTCCGCCAGTAGACCAGTTCCCGCTGTGGACT
ATACCAAGGAGAATATATACGCCGAAATCTGTCCCTCGCACACAGTGGAC
ACCTTTTCGGGCGCCACTCAGTTCACTCATGTGCCCGACGATGATGGAGA
TTATGCATCGCTCAAGTATTCGGTCAATGGACCACAGTCGGTCAGTCGGA
TTGAGGTGAATGGAGCTACGGCGGCGGTGAAGAGCAGCGCAATCAGCTAC
CATACTGTGTACCTGGGCGAGGAACCGCTGGGCGAGAGGCACGCTGCCCA
CATCACCACCGTTGAATTGGCCGGAGAGGATAACATTTACAATACGCTCA
AATGATGACTCATGTGATTCCGGCGACGTAAGTTGGCCGGCGCCAAAGGC
CTGTTTTAAAAACGCCGATGGACAAAAGGGCAAGCAAAAGGGAATTCATG
TTACCCATGATCCTACCAAGGCCATCTTATAGTCTTGTACTCGAAAGAAA
TTGAAGTATTCTCCAATGAAGACTAATTTGTTAATTAACTCATTGAAAAC
ATACCTTACCCTACTTATTACCCACTGTTTTGACAGGACTTTATTTTCAT
GCCATTGGATTACTTTAATATAAACATACATTTTAATAGAAAAAAAAAAA
AAAAAAAAA

LD48089.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:16:44
Subject Length Description Subject Range Query Range Score Percent Strand
B4.c 6656 B4.c 68..4411 1..4344 21705 99.9 Plus
B4-RA 5972 B4-RA 68..4411 1..4344 21705 99.9 Plus
B4.d 7811 B4.d 68..4411 1..4344 21705 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:54:12
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 13502904..13505368 4339..1875 12310 100 Minus
chr2L 23010047 chr2L 13511642..13512161 1067..548 2600 100 Minus
chr2L 23010047 chr2L 13507303..13507788 1877..1392 2430 100 Minus
chr2L 23010047 chr2L 13508150..13508477 1392..1065 1640 100 Minus
chr2L 23010047 chr2L 13545591..13545844 432..179 1270 100 Minus
chr2L 23010047 chr2L 13547813..13547992 180..1 900 100 Minus
chr2L 23010047 chr2L 13533589..13533710 551..430 610 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:45:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:54:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13504215..13506684 4344..1875 12335 100 Minus
2L 23513712 2L 13512958..13513477 1067..548 2600 100 Minus
2L 23513712 2L 13508619..13509104 1877..1392 2430 100 Minus
2L 23513712 2L 13509466..13509793 1392..1065 1640 100 Minus
2L 23513712 2L 13546910..13547163 432..179 1270 100 Minus
2L 23513712 2L 13549132..13549311 180..1 900 100 Minus
2L 23513712 2L 13534907..13535028 551..430 610 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:40:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13504215..13506684 4344..1875 12335 99.9 Minus
2L 23513712 2L 13512958..13513477 1067..548 2600 100 Minus
2L 23513712 2L 13508619..13509104 1877..1392 2430 100 Minus
2L 23513712 2L 13509466..13509793 1392..1065 1640 100 Minus
2L 23513712 2L 13546910..13547163 432..179 1270 100 Minus
2L 23513712 2L 13549132..13549311 180..1 900 100 Minus
2L 23513712 2L 13534907..13535028 551..430 610 100 Minus
Blast to na_te.dros performed 2019-03-15 13:54:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6732..6944 848..1054 321 65.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6945 851..1076 320 63.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2516 850..1062 283 62.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2434..2673 851..1072 277 61.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2274..2554 772..1063 264 59.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2326..2539 848..1058 259 62.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6753..6917 848..1015 256 63.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6917 877..1075 250 60.7 Plus
roo 9092 roo DM_ROO 9092bp 1063..1158 846..941 246 72.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2494 768..941 238 65.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2476..2661 848..1034 229 62.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2779..2954 784..957 226 61.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6895 768..942 224 63.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6774..6861 848..941 223 73.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6831..6937 851..957 220 67.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1518..1603 856..943 219 75.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2383..2476 848..941 218 70.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2378..2474 846..942 215 69.1 Plus
roo 9092 roo DM_ROO 9092bp 1075..1174 846..945 212 68 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1539..1613 853..929 200 76.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2779..2971 848..1049 195 59.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2608..2849 848..1077 184 57.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6846..6923 848..925 183 70.5 Plus
roo 9092 roo DM_ROO 9092bp 1108..1163 846..901 172 78.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2805..2982 850..1034 170 60.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2910..2997 850..937 162 68.1 Plus
roo 9092 roo DM_ROO 9092bp 1049..1135 854..942 161 66.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2500..2546 848..894 154 80.9 Plus
TART-A 13424 TART-A 13424bp 117..156 848..887 146 85 Plus
TART-A 13424 TART-A 13424bp 11295..11334 848..887 146 85 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6877..6923 846..892 145 78.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1555..1600 848..895 145 81.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2747..2836 852..941 144 62.2 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3290..3389 846..943 144 63.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2632..2853 848..1075 142 55.7 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3240..3340 850..941 141 67.6 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 6050..6094 844..887 141 82.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6409..6583 870..1048 139 56.6 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 50..213 750..908 139 60.5 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9080..9243 750..908 139 60.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2477 892..1059 135 57.2 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7942..8018 855..928 135 66.2 Plus
TART-C 11124 TART-C TARTC 11124bp 7505..7546 844..884 135 83.3 Plus
TART-C 11124 TART-C TARTC 11124bp 9386..9462 855..928 135 66.2 Plus
BS 5142 BS BS 5142bp 2015..2091 877..954 135 65.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2879..2966 858..948 132 63.7 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 970..1022 854..906 130 71.7 Plus
TART-A 13424 TART-A 13424bp 910..942 853..885 129 87.9 Plus
TART-A 13424 TART-A 13424bp 12088..12120 853..885 129 87.9 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7384..7458 832..904 127 65.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 5619..5681 883..948 125 68.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6905..6999 850..941 125 62.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6901..7181 764..1054 123 56 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 120..196 854..930 123 65.4 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9150..9226 854..930 123 65.4 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 991..1033 851..892 122 79.1 Plus
Doc3-element 4740 Doc3-element DOC3 4740bp 484..586 857..956 121 59.2 Plus
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 2608..2685 860..937 120 61.5 Plus

LD48089.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:54:50 Download gff for LD48089.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 13502904..13505367 1876..4339 99 <- Minus
chr2L 13507305..13507476 1704..1875 100 == Minus
chr2L 13507528..13507788 1392..1652 100 <- Minus
chr2L 13508151..13508477 1065..1391 100 == Minus
chr2L 13511711..13512157 552..998 90 <- Minus
chr2L 13533589..13533708 432..551 100 <- Minus
chr2L 13545592..13545842 181..431 90 <- Minus
chr2L 13547813..13547992 1..180 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:22:38 Download gff for LD48089.complete
Subject Subject Range Query Range Percent Splice Strand
B4-RB 1..3324 732..4055 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:58:39 Download gff for LD48089.complete
Subject Subject Range Query Range Percent Splice Strand
B4-RB 1..3324 732..4055 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:16:23 Download gff for LD48089.complete
Subject Subject Range Query Range Percent Splice Strand
B4-RA 1..3324 732..4055 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:28:40 Download gff for LD48089.complete
Subject Subject Range Query Range Percent Splice Strand
B4-RB 1..3324 732..4055 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:44:29 Download gff for LD48089.complete
Subject Subject Range Query Range Percent Splice Strand
B4-RA 1..3324 732..4055 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:22:37 Download gff for LD48089.complete
Subject Subject Range Query Range Percent Splice Strand
B4-RA 13..4351 1..4339 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:58:39 Download gff for LD48089.complete
Subject Subject Range Query Range Percent Splice Strand
B4-RA 13..4351 1..4339 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:16:23 Download gff for LD48089.complete
Subject Subject Range Query Range Percent Splice Strand
B4-RA 18..4356 1..4339 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:28:40 Download gff for LD48089.complete
Subject Subject Range Query Range Percent Splice Strand
B4-RA 13..4351 1..4339 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:44:29 Download gff for LD48089.complete
Subject Subject Range Query Range Percent Splice Strand
B4-RA 18..4356 1..4339 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:54:50 Download gff for LD48089.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13504220..13506683 1876..4339 100 <- Minus
2L 13508621..13509104 1392..1875 100 <- Minus
2L 13509467..13509792 1066..1391 100 <- Minus
2L 13512960..13513473 552..1065 100 <- Minus
2L 13534907..13535026 432..551 100 <- Minus
2L 13546911..13547161 181..431 100 <- Minus
2L 13549132..13549311 1..180 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:54:50 Download gff for LD48089.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13504220..13506683 1876..4339 100 <- Minus
2L 13508621..13509104 1392..1875 100 <- Minus
2L 13509467..13509792 1066..1391 100 <- Minus
2L 13512960..13513473 552..1065 100 <- Minus
2L 13534907..13535026 432..551 100 <- Minus
2L 13546911..13547161 181..431 100 <- Minus
2L 13549132..13549311 1..180 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:54:50 Download gff for LD48089.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13504220..13506683 1876..4339 100 <- Minus
2L 13508621..13509104 1392..1875 100 <- Minus
2L 13509467..13509792 1066..1391 100 <- Minus
2L 13512960..13513473 552..1065 100 <- Minus
2L 13534907..13535026 432..551 100 <- Minus
2L 13546911..13547161 181..431 100 <- Minus
2L 13549132..13549311 1..180 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:16:23 Download gff for LD48089.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13504220..13506683 1876..4339 100 <- Minus
arm_2L 13508621..13509104 1392..1875 100 <- Minus
arm_2L 13509467..13509792 1066..1391 100 <- Minus
arm_2L 13512960..13513473 552..1065 100 <- Minus
arm_2L 13534907..13535026 432..551 100 <- Minus
arm_2L 13546911..13547161 181..431 100 <- Minus
arm_2L 13549132..13549311 1..180 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:05:17 Download gff for LD48089.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13549132..13549311 1..180 100   Minus
2L 13546911..13547161 181..431 100 <- Minus
2L 13504220..13506683 1876..4339 100 <- Minus
2L 13508621..13509104 1392..1875 100 <- Minus
2L 13509467..13509792 1066..1391 100 <- Minus
2L 13512960..13513473 552..1065 100 <- Minus
2L 13534907..13535026 432..551 100 <- Minus

LD48089.pep Sequence

Translation from 731 to 4054

> LD48089.pep
MNETLKLSGLGMQRTNIELERQRHLANWLMNSRPHMPGGPAAATTTSAAA
ATTPTASATKGATTTTATTTNPGSTVGGAGAGPVGGNGVATAAAAGAPSN
SVAAAAAAACNGGAAVGAHHGHHSAAGARKPKLRRFNSHDTSSNMFSVAD
FENARLARRNEIELNQRRARRVRGSANNSTYGLGSGSGLLGGAHSGYCDA
LNGSGDYSTGDSKASKGSSEGALTAIEFLERNSLPRVVRILHASKSSNET
LQSSSSHGSSTAASSSSSTGANPFGSGGSGGGNISSGNIDTGTHSSSSGG
SATGNGTGSGPGLSSGSGSGSGSGHQNNNGRHSSNGGTPPGHDELFLLYR
LVRQRNIYHGHNAKTQASQRKKTLLIPQEFPGYFSMLSEKGLPTATQYGS
LIQLVRERVYKFVSVDNMPAFTESSPNSTSSPTHEGCLPINKGRPQYVKT
TARGGQVFRLLAVFEDGKQDQVNMSQHGNGNATRSHGSGYMGREKEKNRY
AQLLNENRQVLYVPLSTKGKFYEIEPGIPQLLQKLGDAQRKLNPECVHRL
SALVTAAKQLPLTLRYISGPGGPDIPEQLCISQVSKEDVVVGCSIEDVDT
QTPLQLRKFYPSRDIQLVKSYLGFDSEQRMLANTNVQNMLKFCQFNCDPF
LKLVEIELIQRSERSGSKNREGLRILKPLHFPKILRREKSSMAAAHEKED
SIIFLSKSDLENLEAKEAAASAAAHSESSLNRISERMRVFQSTKKKWFGK
HHPQQQQPQIEKHQSDLDLDEQAKRMSMERYTDMSKLLQERFGSNPEQPE
QDAISLNSTAASDTETTMLTTMEPRSLDTMMQKSMSLQDIELLNGQCKQR
PDLLASHNHNDAISEAGTELEDVENQTPPPQSFITEKLYNEFHVKTRQYS
KSSSSLHQLPLFSLPQKLQLHEAEKEKRHLMLLKAQQQALTKEPVTGRRA
AGGVSLLGGGLNQLAISPASLVEDDLPYSSVRDSLVISGGDCLRSESASR
PVPAVDYTKENIYAEICPSHTVDTFSGATQFTHVPDDDGDYASLKYSVNG
PQSVSRIEVNGATAAVKSSAISYHTVYLGEEPLGERHAAHITTVELAGED
NIYNTLK*

LD48089.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:19:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21634-PA 1091 GF21634-PA 1..1091 1..1107 4058 78.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:19:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10194-PA 1109 GG10194-PA 1..1109 1..1107 5779 97.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:19:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH25078-PA 551 GH25078-PA 1..393 402..750 1150 65.4 Plus
Dgri\GH24091-PA 497 GH24091-PA 206..497 833..1107 959 70.5 Plus
Dgri\GH24091-PA 497 GH24091-PA 39..187 297..466 548 66.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:10:31
Subject Length Description Subject Range Query Range Score Percent Strand
B4-PC 1107 CG9239-PC 1..1107 1..1107 5681 100 Plus
B4-PB 1107 CG9239-PB 1..1107 1..1107 5681 100 Plus
B4-PA 1107 CG9239-PA 1..1107 1..1107 5681 100 Plus
sbb-PE 929 CG5580-PE 279..577 43..338 201 25.5 Plus
sbb-PC 929 CG5580-PC 279..577 43..338 201 25.5 Plus
sbb-PF 939 CG5580-PF 289..587 43..338 201 25.5 Plus
sbb-PH 2302 CG5580-PH 279..577 43..338 201 25.5 Plus
sbb-PD 2302 CG5580-PD 279..577 43..338 201 25.5 Plus
sbb-PG 2312 CG5580-PG 289..587 43..338 201 25.5 Plus
sbb-PJ 2330 CG5580-PJ 289..587 43..338 201 25.5 Plus
sgg-PA 575 CG2621-PA 345..565 121..337 177 26.2 Plus
sgg-PJ 575 CG2621-PJ 345..565 121..337 177 26.2 Plus
sgg-PR 597 CG2621-PR 367..587 121..337 177 26.2 Plus
sgg-PM 772 CG2621-PM 542..762 121..337 177 26.2 Plus
sgg-PQ 1168 CG2621-PQ 938..1158 121..337 177 26.2 Plus
sbb-PE 929 CG5580-PE 156..436 8..336 175 26 Plus
sbb-PC 929 CG5580-PC 156..436 8..336 175 26 Plus
sbb-PF 939 CG5580-PF 166..446 8..336 175 26 Plus
sbb-PH 2302 CG5580-PH 156..436 8..336 175 26 Plus
sbb-PD 2302 CG5580-PD 156..436 8..336 175 26 Plus
sbb-PG 2312 CG5580-PG 166..446 8..336 175 26 Plus
sbb-PJ 2330 CG5580-PJ 166..446 8..336 175 26 Plus
Mur89F-PC 2158 CG4090-PC 626..927 43..338 169 21.9 Plus
Mur89F-PB 2159 CG4090-PB 626..927 43..338 169 21.9 Plus
NAT1-PD 1488 CG3845-PD 88..373 38..341 166 23.1 Plus
Mur89F-PC 2158 CG4090-PC 663..963 44..338 162 21.9 Plus
Mur89F-PB 2159 CG4090-PB 663..963 44..338 162 21.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:19:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18215-PA 1063 GI18215-PA 40..1063 96..1107 3019 65 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:19:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20520-PA 123 GL20520-PA 6..123 992..1107 440 73.6 Plus
Dper\GL25698-PA 187 GL25698-PA 1..141 1..173 387 59.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:19:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21634-PA 1071 GA21634-PA 293..1071 341..1107 3193 81.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:19:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25466-PA 1109 GM25466-PA 1..1109 1..1107 5851 98.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:19:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22055-PA 1005 GD22055-PA 9..1005 113..1107 5298 99.2 Plus
Dsim\GD11972-PA 123 GD11972-PA 1..114 1..111 517 93.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:19:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14844-PA 1088 GJ14844-PA 267..1088 332..1107 2721 69.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:19:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14856-PA 1123 GK14856-PA 308..1123 339..1107 2818 73.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:19:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11558-PA 1116 GE11558-PA 1..1116 1..1107 5722 96.9 Plus

LD48089.hyp Sequence

Translation from 731 to 4054

> LD48089.hyp
MNETLKLSGLGMQRTNIELERQRHLANWLMNSRPHMPGGPAAATTTSAAA
ATTPTASATKGATTTTATTTNPGSTVGGAGAGPVGGNGVATAAAAGAPSN
SVAAAAAAACNGGAAVGAHHGHHSAAGARKPKLRRFNSHDTSSNMFSVAD
FENARLARRNEIELNQRRARRVRGSANNSTYGLGSGSGLLGGAHSGYCDA
LNGSGDYSTGDSKASKGSSEGALTAIEFLERNSLPRVVRILHASKSSNET
LQSSSSHGSSTAASSSSSTGANPFGSGGSGGGNISSGNIDTGTHSSSSGG
SATGNGTGSGPGLSSGSGSGSGSGHQNNNGRHSSNGGTPPGHDELFLLYR
LVRQRNIYHGHNAKTQASQRKKTLLIPQEFPGYFSMLSEKGLPTATQYGS
LIQLVRERVYKFVSVDNMPAFTESSPNSTSSPTHEGCLPINKGRPQYVKT
TARGGQVFRLLAVFEDGKQDQVNMSQHGNGNATRSHGSGYMGREKEKNRY
AQLLNENRQVLYVPLSTKGKFYEIEPGIPQLLQKLGDAQRKLNPECVHRL
SALVTAAKQLPLTLRYISGPGGPDIPEQLCISQVSKEDVVVGCSIEDVDT
QTPLQLRKFYPSRDIQLVKSYLGFDSEQRMLANTNVQNMLKFCQFNCDPF
LKLVEIELIQRSERSGSKNREGLRILKPLHFPKILRREKSSMAAAHEKED
SIIFLSKSDLENLEAKEAAASAAAHSESSLNRISERMRVFQSTKKKWFGK
HHPQQQQPQIEKHQSDLDLDEQAKRMSMERYTDMSKLLQERFGSNPEQPE
QDAISLNSTAASDTETTMLTTMEPRSLDTMMQKSMSLQDIELLNGQCKQR
PDLLASHNHNDAISEAGTELEDVENQTPPPQSFITEKLYNEFHVKTRQYS
KSSSSLHQLPLFSLPQKLQLHEAEKEKRHLMLLKAQQQALTKEPVTGRRA
AGGVSLLGGGLNQLAISPASLVEDDLPYSSVRDSLVISGGDCLRSESASR
PVPAVDYTKENIYAEICPSHTVDTFSGATQFTHVPDDDGDYASLKYSVNG
PQSVSRIEVNGATAAVKSSAISYHTVYLGEEPLGERHAAHITTVELAGED
NIYNTLK*

LD48089.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:18:06
Subject Length Description Subject Range Query Range Score Percent Strand
B4-PC 1107 CG9239-PC 1..1107 1..1107 5681 100 Plus
B4-PB 1107 CG9239-PB 1..1107 1..1107 5681 100 Plus
B4-PA 1107 CG9239-PA 1..1107 1..1107 5681 100 Plus
sbb-PE 929 CG5580-PE 279..577 43..338 201 25.5 Plus
sbb-PC 929 CG5580-PC 279..577 43..338 201 25.5 Plus
sbb-PE 929 CG5580-PE 156..436 8..336 175 26 Plus