Clone LP01144 Report

Search the DGRC for LP01144

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:11
Well:44
Vector:pOT2
Associated Gene/TranscriptCG12003-RA
Protein status:LP01144.pep: gold
Preliminary Size:1532
Sequenced Size:1825

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12003 2002-01-01 Sim4 clustering to Release 2
CG12003 2002-05-18 Blastp of sequenced clone
CG12003 2003-01-01 Sim4 clustering to Release 3
CG12003 2008-04-29 Release 5.5 accounting
CG12003 2008-08-15 Release 5.9 accounting
CG12003 2008-12-18 5.12 accounting

Clone Sequence Records

LP01144.complete Sequence

1825 bp (1825 high quality bases) assembled on 2002-05-18

GenBank Submission: AY118973

> LP01144.complete
TTCGAATTGACCGCGTTACCGTCACCGTCACCGTCTCCTTGCCCGCCGCA
GTCGGCCGTCATTGATCCTCGTCACAATTATCATCGCATCGCATTGCTCA
TTTCATCGTTAAACGATCGGATCATTTGATTGATCGATCGCATGTGCGAA
GGATTAAAGCGATGAGAAGATCGAAAATTGCCCGCTTTCACACAATGGCC
GCGTTGGGCCTACTGCTGCTGGTGGGCGTGCATGGAGCCACGATAATCAG
CATCAAGTACCCGGATAAGCCCGCCGTGGAGCCGCAGCCGGCCAAGAGGG
ATCTCAGCCTGAGCTACGCAGCCACCAACATCGACTCCAAGGAGGGTACC
CGCGTGAAGACCATCACGGTGATCAAGAATGTGGGAGGCATTTCGGCGCC
CGAAGAAGCTGCGGCCTTGGGATCCTCCATCGCCAGCAGCCACAACCACA
AGCAGCAGCCGAAACTGATCATTGATCCCAGTCTGCACAAGAGCGAGGAG
TGGGCAAGTGCTTTCCGAGACAACTTTGACTCCTACGGAGCACTGCCCGA
TGTGCCCGACATAGATGACCTATTCGAGTTTGTCAATCGCAAGAAGCCCG
AGGGTGAAAAGAAACCGGAGGAGGTGCCCAGCCAGAAGGAGGAAAGGGTG
CCGAAGGAGTTGCAAAAGCCGGCGGAGGAGACCACCACCAAGAAAGCCGG
AGCCAGTGAGCAAAGCGAGGGCGGGATCGTACCCAGTGGCAACATCGATA
GCGACGAGGCTGTGGTCGAGAAGATAAAGGGTGATGCCGAACTGTTGCCG
CACATTAAGCAGGCCAACATCCTGCGCCTCCAGGCGGCCCACGCCCAAGC
CCGCTCGGGAGTACGAACCAAGGAGTCGCTGATCGCCGTCAACTACTCCA
CGCCCATGCATCAGGTGAGCCAGTACTTCGACAACTATGTCCAAGCGGTG
CCAAATGGCTACGACTACCCAAAGCCCTGTGGCATGCAGCCTGGCAACAG
TATCCAAGTGACCACGCCTTCAGGCCGCACCTACGACATTCCGCAGAGCA
ACAGCAGTGGCACTGGTGGTGGCAACCACCCGTACTTGGCTCCAGCGCTC
ACAAAGAAGACGCAGATTCCGCCGATCACGGTGCAGCCTCCGGTGCAACA
GCAGCAGCCTCAGCCTCCCAATTACTCCTCCGTGAACTCGATTGTGCCGC
CTATAGTGCAACCGCAGCCTCAGGGCAATGCAAATCTTCCACAGCAGCCG
CAACAGCCTCCGGTGGTGAATCCTCCAAACGGAGGTATCCTGCCGCCTCT
GGGAACGGGCGGTATCTCCACCAGCCAGCGTCCCTATGTGGCGCCCAGGC
TGCGAAACAACGGCCTAGGCATCAGCAGGGCGCCCAGCACTCCGGGCCCG
ATTCAGATTCCCGGGCAACCTGGCCTCGTGGGTAACAACAATCCACAGCA
GACCCCGAACTTCCGCACGAGCATTTTTGGCGGTGGCTCAAATCGTCCCA
ACACGCTGCGATCGCGTGGTCTAAAGTATTGAAAACTTAAACTAAGTGTA
CACTCTTAAAAACAGTCGAAATTATAGTTCTTAGAGGGAGATTACCATCA
AAATTGCCAATCGAAGCCAGCATTGTGGCTGCATTTATCCATATATCATT
TATAATTATAGAAATATATTTTAAAAATTGTTTGATAGCCTTAAAGTTAT
GTACCAATATGAAATAGTGGTATGTTTTCCGATCAAACAGCTATTAAGAC
TATTTAATGGTAAGCGCTATAAAACCCAATTGATATGTTGCCTTGGCAAT
GCTAAACAAAAAAAAAAAAAAAAAA

LP01144.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:02:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG12003-RA 1996 CG12003-RA 190..1996 1..1807 9035 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:11:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 1565680..1567306 177..1807 7775 98.6 Plus
chr3L 24539361 chr3L 1564903..1565076 1..174 870 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:45:41 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:11:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1566172..1567805 177..1810 8170 100 Plus
3L 28110227 3L 1565392..1565567 1..176 880 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:34:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 1566172..1567805 177..1810 8170 100 Plus
3L 28103327 3L 1565392..1565567 1..176 880 100 Plus
Blast to na_te.dros performed on 2019-03-16 18:11:27 has no hits.

LP01144.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:12:06 Download gff for LP01144.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 1564903..1565078 1..176 99 -> Plus
chr3L 1565680..1567306 177..1807 96   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:32:44 Download gff for LP01144.complete
Subject Subject Range Query Range Percent Splice Strand
CG12003-RA 1..1371 162..1532 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:43:55 Download gff for LP01144.complete
Subject Subject Range Query Range Percent Splice Strand
CG12003-RA 1..1371 162..1532 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:11:00 Download gff for LP01144.complete
Subject Subject Range Query Range Percent Splice Strand
CG12003-RA 1..1371 162..1532 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:36:03 Download gff for LP01144.complete
Subject Subject Range Query Range Percent Splice Strand
CG12003-RA 1..1371 162..1532 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:32:59 Download gff for LP01144.complete
Subject Subject Range Query Range Percent Splice Strand
CG12003-RA 1..1371 162..1532 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:18:38 Download gff for LP01144.complete
Subject Subject Range Query Range Percent Splice Strand
CG12003-RA 1..1807 1..1807 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:43:54 Download gff for LP01144.complete
Subject Subject Range Query Range Percent Splice Strand
CG12003-RA 1..1807 1..1807 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:11:00 Download gff for LP01144.complete
Subject Subject Range Query Range Percent Splice Strand
CG12003-RA 1..1807 1..1807 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:36:03 Download gff for LP01144.complete
Subject Subject Range Query Range Percent Splice Strand
CG12003-RA 1..1807 1..1807 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:32:59 Download gff for LP01144.complete
Subject Subject Range Query Range Percent Splice Strand
CG12003-RA 1..1807 1..1807 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:12:06 Download gff for LP01144.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1565392..1565567 1..176 100 -> Plus
3L 1566172..1567802 177..1807 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:12:06 Download gff for LP01144.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1565392..1565567 1..176 100 -> Plus
3L 1566172..1567802 177..1807 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:12:06 Download gff for LP01144.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1565392..1565567 1..176 100 -> Plus
3L 1566172..1567802 177..1807 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:11:00 Download gff for LP01144.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1565392..1565567 1..176 100 -> Plus
arm_3L 1566172..1567802 177..1807 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:08:28 Download gff for LP01144.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1566172..1567802 177..1807 100   Plus
3L 1565392..1565567 1..176 100 -> Plus

LP01144.pep Sequence

Translation from 161 to 1531

> LP01144.pep
MRRSKIARFHTMAALGLLLLVGVHGATIISIKYPDKPAVEPQPAKRDLSL
SYAATNIDSKEGTRVKTITVIKNVGGISAPEEAAALGSSIASSHNHKQQP
KLIIDPSLHKSEEWASAFRDNFDSYGALPDVPDIDDLFEFVNRKKPEGEK
KPEEVPSQKEERVPKELQKPAEETTTKKAGASEQSEGGIVPSGNIDSDEA
VVEKIKGDAELLPHIKQANILRLQAAHAQARSGVRTKESLIAVNYSTPMH
QVSQYFDNYVQAVPNGYDYPKPCGMQPGNSIQVTTPSGRTYDIPQSNSSG
TGGGNHPYLAPALTKKTQIPPITVQPPVQQQQPQPPNYSSVNSIVPPIVQ
PQPQGNANLPQQPQQPPVVNPPNGGILPPLGTGGISTSQRPYVAPRLRNN
GLGISRAPSTPGPIQIPGQPGLVGNNNPQQTPNFRTSIFGGGSNRPNTLR
SRGLKY*

LP01144.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:09:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24776-PA 477 GF24776-PA 13..477 24..456 1425 70.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:09:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14800-PA 455 GG14800-PA 1..455 1..456 2035 95 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:09:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17053-PA 428 GH17053-PA 1..428 12..456 999 55.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:26:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG12003-PA 456 CG12003-PA 1..456 1..456 2384 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:09:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12058-PA 467 GI12058-PA 1..467 12..456 996 54.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:09:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17119-PA 443 GL17119-PA 1..443 12..456 1201 65.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:09:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11326-PA 449 GA11326-PA 1..449 12..456 1216 66 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:09:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14422-PA 455 GM14422-PA 1..455 1..456 2275 96.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:09:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13626-PA 364 GD13626-PA 171..364 262..456 969 96.9 Plus
Dsim\GD13626-PA 364 GD13626-PA 1..171 1..171 736 96.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:09:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13328-PA 451 GJ13328-PA 1..451 12..456 978 56.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:09:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12571-PA 449 GK12571-PA 14..449 22..456 1063 55.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:09:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21162-PA 457 GE21162-PA 1..457 1..456 1980 94.5 Plus

LP01144.hyp Sequence

Translation from 161 to 1531

> LP01144.hyp
MRRSKIARFHTMAALGLLLLVGVHGATIISIKYPDKPAVEPQPAKRDLSL
SYAATNIDSKEGTRVKTITVIKNVGGISAPEEAAALGSSIASSHNHKQQP
KLIIDPSLHKSEEWASAFRDNFDSYGALPDVPDIDDLFEFVNRKKPEGEK
KPEEVPSQKEERVPKELQKPAEETTTKKAGASEQSEGGIVPSGNIDSDEA
VVEKIKGDAELLPHIKQANILRLQAAHAQARSGVRTKESLIAVNYSTPMH
QVSQYFDNYVQAVPNGYDYPKPCGMQPGNSIQVTTPSGRTYDIPQSNSSG
TGGGNHPYLAPALTKKTQIPPITVQPPVQQQQPQPPNYSSVNSIVPPIVQ
PQPQGNANLPQQPQQPPVVNPPNGGILPPLGTGGISTSQRPYVAPRLRNN
GLGISRAPSTPGPIQIPGQPGLVGNNNPQQTPNFRTSIFGGGSNRPNTLR
SRGLKY*

LP01144.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:28:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG12003-PA 456 CG12003-PA 1..456 1..456 2384 100 Plus