Clone LP01149 Report

Search the DGRC for LP01149

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:11
Well:49
Vector:pOT2
Associated Gene/TranscriptCG12237-RA
Protein status:LP01149.pep: gold
Preliminary Size:1931
Sequenced Size:1669

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12237 2001-01-01 Release 2 assignment
CG12237 2001-10-10 Blastp of sequenced clone
CG12237 2003-01-01 Sim4 clustering to Release 3
CG12237 2008-04-29 Release 5.5 accounting
CG12237 2008-08-15 Release 5.9 accounting
CG12237 2008-12-18 5.12 accounting

Clone Sequence Records

LP01149.complete Sequence

1669 bp (1669 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061529

> LP01149.complete
CACAACGGTGTTTGCGCCCAGGCGACCTGGCATTTAGCATCGTGGGCGGC
GCGGACACACTGGTCCTCGCACAAAACTCGCACTCGAACTTGCTCTCCGC
GCGCTCTGAGCGCATCCATAGCCGGAGCAGGAGCGGAGCACACGATGTCC
TCGAACCAGGAGCAGTCACCCGCCGCAGTGGCCGCGGCCGTGGCCAGCTG
CAGGCTAAGGAAACAGCAGCGCCGTCGACTGGCGGCCTTCGACTTCGACC
ACACGATCGTTTCCCAGAACACGGACACCGTGGTGCGCGACCTGCTGCCC
ACGGAGGTGACGAGCGCCAAGGTCAACGAGCTGGTTGAAAACGACTGCTG
GACGGAGTACATGGCCGAGGTGTTTCGCTTGCTGCACGAGCAACAGGTGT
CGGAGGCGCGCATTAGGGACACCATTCGTGGCATACCCGAGGTGCCCGGA
TTCGTGCGCCTGATCAAGCATCTGGCCAAGCGGCTGCACTACGACCTGAT
CATCATCAGTGACTCGAACAGCGTCTTTATCGACGAGTGGCTGCGGGCAC
ATAACTTGGCCGATTGCTTTGTGGCCATCTTTACCAATCCGGCGGAATTC
GATGCCTCCGGACGGCTTATGGTCCGCGCCCACCACCAGCAGTCGGATTG
CAAGCTGAGCGCCAGCAATTTGTGCAAGGGCCGCGTGCTGGAGCACTTTG
TCATCGAGCAGGACCTGCGGCGCAGCATACGCTATGACCACGTCTTCTAT
GTGGGCGACGGCAACAACGACATCTGCCCCGTGCTGCGGCAGCGGGCGTG
CGACTTTGCCTGCGCCCGCAAGGGGTTCGCAATGGAGAAGCACCTGCTCC
GCAATCGCAGCAAATTGAAGCTGCGCGCCCAGCTGCTGATCTGGAAGAGC
GGCTTCGATCTGATGGACCAGATGCTGGCCCTGCCGCAGCTGAAGACCCC
CCAGGTGCAGGGCGATGGGGATCAGCCGGATCAGGATGCGGATACGGATG
GCAAAGTACCGGAGGTGGCACGTCGGGCATCGGCAGTTGCCGGGCCGACC
AAGTCGCCCAACTAAGGTGGCATGTGCTCGCATTTGGCACCGGCACGAGT
AAGTAGAACGGGTAATCCTCGAGAGTGACGATTGCCCAGCTGCAGGATGG
CCATCGCATAGGAAACTGCTACTTTGGAGCACGATATGGTATTTCATGGT
ATCGAAAGATACCGTTCCTTGTTCCTTGTTTTGGACTATGCTGTGCGATA
GCAATCATGCGGTTCTACGATGCCAGGAGTACTCGTGAGGGTCTCAAATG
CGAAACCATCCATCCCGATCCCATCATCCCCATCCAGTTGTTGGTTGCAT
CATGTGGTCTGGTCTGGTTCTTTATTTGATCCGCTCGCCACTTCGCTGCA
CTGGCCGTGCCAAGTGTACTGGGTGGATCTGTATTTATATCTGTGTGCCG
GGACTTTACCTGCAAAACAATTTGTGGAAATCCAAACAGTACAACTTCGG
AGGTGTGCCCAGGACTTGAGGCGTCAATTTGTGCTGCGGCTGTTAGTGTT
TATTCCATGTGTCTATATTTAAACCTGTTGTAATTGAAGCTATTGCAAGC
GCTGTATATGAGTGTCCATATTATATGCATTTGAATGTGTGTTTTGCCGT
TAAAAAAAAAAAAAAAAAA

LP01149.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:04:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG12237-RA 1677 CG12237-RA 26..1677 1..1652 8260 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:13:09
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 19529983..19531633 1651..1 8240 99.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:45:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:13:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19641190..19642841 1652..1 8260 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:28:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 19649288..19650939 1652..1 8260 100 Minus
Blast to na_te.dros performed 2019-03-16 11:13:07
Subject Length Description Subject Range Query Range Score Percent Strand
S2 1735 S2 S2 1735bp 297..362 1578..1648 118 67.6 Plus

LP01149.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:13:53 Download gff for LP01149.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 19529983..19531633 1..1651 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:32:45 Download gff for LP01149.complete
Subject Subject Range Query Range Percent Splice Strand
CG12237-RA 1..921 145..1065 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:38:51 Download gff for LP01149.complete
Subject Subject Range Query Range Percent Splice Strand
CG12237-RA 1..921 145..1065 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:05:38 Download gff for LP01149.complete
Subject Subject Range Query Range Percent Splice Strand
CG12237-RA 1..921 145..1065 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:07:42 Download gff for LP01149.complete
Subject Subject Range Query Range Percent Splice Strand
CG12237-RA 1..921 145..1065 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:30:21 Download gff for LP01149.complete
Subject Subject Range Query Range Percent Splice Strand
CG12237-RA 1..921 145..1065 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:20:00 Download gff for LP01149.complete
Subject Subject Range Query Range Percent Splice Strand
CG12237-RA 26..1676 1..1651 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:38:51 Download gff for LP01149.complete
Subject Subject Range Query Range Percent Splice Strand
CG12237-RA 26..1676 1..1651 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:05:38 Download gff for LP01149.complete
Subject Subject Range Query Range Percent Splice Strand
CG12237-RA 29..1679 1..1651 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:07:42 Download gff for LP01149.complete
Subject Subject Range Query Range Percent Splice Strand
CG12237-RA 26..1676 1..1651 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:30:21 Download gff for LP01149.complete
Subject Subject Range Query Range Percent Splice Strand
CG12237-RA 29..1679 1..1651 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:13:53 Download gff for LP01149.complete
Subject Subject Range Query Range Percent Splice Strand
X 19641191..19642841 1..1651 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:13:53 Download gff for LP01149.complete
Subject Subject Range Query Range Percent Splice Strand
X 19641191..19642841 1..1651 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:13:53 Download gff for LP01149.complete
Subject Subject Range Query Range Percent Splice Strand
X 19641191..19642841 1..1651 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:05:38 Download gff for LP01149.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19535224..19536874 1..1651 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:43:51 Download gff for LP01149.complete
Subject Subject Range Query Range Percent Splice Strand
X 19649289..19650939 1..1651 100   Minus

LP01149.hyp Sequence

Translation from 0 to 1064

> LP01149.hyp
HNGVCAQATWHLASWAARTHWSSHKTRTRTCSPRALSASIAGAGAEHTMS
SNQEQSPAAVAAAVASCRLRKQQRRRLAAFDFDHTIVSQNTDTVVRDLLP
TEVTSAKVNELVENDCWTEYMAEVFRLLHEQQVSEARIRDTIRGIPEVPG
FVRLIKHLAKRLHYDLIIISDSNSVFIDEWLRAHNLADCFVAIFTNPAEF
DASGRLMVRAHHQQSDCKLSASNLCKGRVLEHFVIEQDLRRSIRYDHVFY
VGDGNNDICPVLRQRACDFACARKGFAMEKHLLRNRSKLKLRAQLLIWKS
GFDLMDQMLALPQLKTPQVQGDGDQPDQDADTDGKVPEVARRASAVAGPT
KSPN*

LP01149.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:24:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG12237-PA 306 CG12237-PA 1..306 49..354 1588 100 Plus
CG14212-PA 262 CG14212-PA 30..257 75..309 394 37.1 Plus

LP01149.pep Sequence

Translation from 144 to 1064

> LP01149.pep
MSSNQEQSPAAVAAAVASCRLRKQQRRRLAAFDFDHTIVSQNTDTVVRDL
LPTEVTSAKVNELVENDCWTEYMAEVFRLLHEQQVSEARIRDTIRGIPEV
PGFVRLIKHLAKRLHYDLIIISDSNSVFIDEWLRAHNLADCFVAIFTNPA
EFDASGRLMVRAHHQQSDCKLSASNLCKGRVLEHFVIEQDLRRSIRYDHV
FYVGDGNNDICPVLRQRACDFACARKGFAMEKHLLRNRSKLKLRAQLLIW
KSGFDLMDQMLALPQLKTPQVQGDGDQPDQDADTDGKVPEVARRASAVAG
PTKSPN*

LP01149.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:41:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20415-PA 298 GF20415-PA 17..298 19..306 1322 86.2 Plus
Dana\GF20414-PA 268 GF20414-PA 21..265 1..263 439 37.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:41:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18039-PA 307 GG18039-PA 1..307 1..306 1475 93.2 Plus
Dere\GG19240-PA 262 GG19240-PA 30..260 27..266 407 37.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:41:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24805-PA 299 GH24805-PA 15..294 18..301 1151 75.4 Plus
Dgri\GH24804-PA 256 GH24804-PA 5..250 10..262 382 33.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG12237-PA 306 CG12237-PA 1..306 1..306 1588 100 Plus
CG14212-PA 262 CG14212-PA 30..257 27..261 394 37.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:41:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21532-PA 296 GI21532-PA 16..283 19..296 1130 76.3 Plus
Dmoj\GI21530-PA 265 GI21530-PA 19..257 23..260 334 35.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:41:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27061-PA 294 GL27061-PA 15..294 19..306 1265 81.7 Plus
Dper\GL27060-PA 265 GL27060-PA 32..261 27..261 395 37 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:41:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11499-PA 294 GA11499-PA 15..294 19..306 1268 82.4 Plus
Dpse\GA12827-PA 265 GA12827-PA 32..261 27..261 389 36.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:41:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22723-PA 306 GM22723-PA 1..306 1..306 1598 97.7 Plus
Dsec\GM22975-PA 262 GM22975-PA 30..260 27..266 412 37.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:41:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24455-PA 148 GD24455-PA 1..148 159..306 778 97.3 Plus
Dsim\GD17453-PA 262 GD17453-PA 30..260 27..266 408 37 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:41:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16005-PA 308 GJ16005-PA 24..291 21..294 1117 76 Plus
Dvir\GJ16003-PA 259 GJ16003-PA 19..254 23..262 382 35.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16224-PA 305 GK16224-PA 10..256 23..267 1124 83.4 Plus
Dwil\GK25726-PA 256 GK25726-PA 23..254 27..260 449 38.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:41:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17368-PA 308 GE17368-PA 1..308 1..306 1516 93.8 Plus
Dyak\GE15859-PA 262 GE15859-PA 30..260 27..266 413 38.3 Plus