Clone LP01162 Report

Search the DGRC for LP01162

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:11
Well:62
Vector:pOT2
Associated Gene/TranscriptCG9186-RA
Protein status:LP01162.pep: gold
Preliminary Size:1683
Sequenced Size:1484

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9186 2001-01-01 Release 2 assignment
CG9186 2001-10-10 Blastp of sequenced clone
CG9186 2003-01-01 Sim4 clustering to Release 3
CG9186 2008-04-29 Release 5.5 accounting
CG9186 2008-08-15 Release 5.9 accounting
CG9186 2008-12-18 5.12 accounting

Clone Sequence Records

LP01162.complete Sequence

1484 bp (1484 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061530

> LP01162.complete
AATAGGTTGACAAATAATAATTTACGCCATAGTATTTTTTTTAAAGTTAA
TGCATTTTGGTTTTTTTCTTTTTTAAACAAAATTATCTACACTTTTTCTC
TGTCTGAGCAATCGTTATCATGCAGTGTTTATCAGAGCTATCAACCCTGG
GGATAAACCGCGCCAATCCTCAAGATTTGAAACTCGTGAAAGGCTGCAGC
CGAGGTGGTTGGACAAAGGAAAACCGGTTGCCACGGGGATTAGACAACTC
ATCGCGTGTGAAAAGAGTGGGATCAACACAGGTGCCGATTGATTTTCAGC
GCAGTTTGCCACGCCAACAGCAGCGGAAAATATGCAGGAGGCCTACGTCA
ACATCAACTCCATTCCCACCCACATATTCACATGGGGCAGGTGGATTGAG
GAGACCATAACCGAGAAGGAGATCGTCATCTGCATAACTGGCAATCCCGG
TTTGCCAGGTTTCTACACAGAGTTCGCAGGCACTTTGCAAAAGGAGTTGG
GCGATCTTCCAGTTTGGGTGATAGGGCACGCTGGCCATGATGATCCGCCA
GAGGCCAGTATTCGGGAGGTTCCTCAACTCAGCGGCAACGAGGAGCTCTT
CAATTTGGACGGACAAATCCGGCATAAAATCGCCTTCATCGAGAAATACG
TGCCAAGTGATGTCAAGATCCACTTGATTGGGCACTCCATCGGAGCGTGG
ATGATCCTGCAGCTGCTGGAAAACGAGCGGATACGGAGTCGCATCCAAAA
GTGCTATATGCTGTTCCCCACCGTCGAGCGGATGATGGAGTCGCCCAATG
GATGGGTGTTCACCAAGGTGGCCATGCCCCTGTACTCCGTGTTTGGCTAC
ATTTTCTTCAGCTTCTTCAACTTTCTGCCCGTGTGGTTGCGCCTGATGCT
GATACAGATCTACTTCTTGATTTTCTCCATTCCACGACAGTTTCTGGGCA
CCGCCCTAAAGTACTCCAAACCATCGGTAGCGGAGAAGGTGGTCTTCCTG
GCCGACGATGAGATGGCCAGGGTTCGCGGGATTCAAAGGGAGATTGTAGA
GCAGAACCTGGACCTCCTCAAGTTTTACTACGGCACTACCGACGGATGGG
TACCAATCTCCTACTATGACCAGCTCAAAAAAGACTACCCCAAGGTGGAC
GCCCAGCTGGACACCAAGAAGATCGACCACGCTTTCGTCCTGCGCCACTC
GCAGCCTATGGCTGTAATCGTAAGAGACATGATCCAGCAGCACAGACGTG
TTTGAAGTCGATTGTTGACCTGGCCCAGACAATCAGCCCTGTCCATTACC
TAATCCATCCATGCCAATAGACTTGGGAATCCGGATTACGGTTGAACAGC
AAACCAATAGCAATTACTCCACTGCCTTTGTGTGGCAATTAGTTCGTTTT
TATTAGTATCTTTTTGCAGCTCTCGAAGACAACTCTAAATATAGTCAAAA
GTGATTTAACACGGTTAAAAAAAAAAAAAAAAAA

LP01162.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:04:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG9186-RB 1466 CG9186-RB 1..1466 1..1466 7330 100 Plus
CG9186-RA 1586 CG9186-RA 214..1558 122..1466 6725 100 Plus
CG2469-RA 3779 CG2469-RA 3663..3779 1466..1350 585 100 Minus
CG9186-RA 1586 CG9186-RA 1..80 43..122 400 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:32:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 1311207..1312150 1466..523 4660 99.6 Minus
chr3L 24539361 chr3L 1312207..1312610 525..122 1945 98.8 Minus
chr3L 24539361 chr3L 1312744..1312865 122..1 595 99.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:45:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1311719..1312662 1466..523 4720 100 Minus
3L 28110227 3L 1312719..1313122 525..122 2020 100 Minus
3L 28110227 3L 1313256..1313377 122..1 610 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:28:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 1311719..1312662 1466..523 4720 100 Minus
3L 28103327 3L 1312719..1313122 525..122 2020 100 Minus
3L 28103327 3L 1313256..1313377 122..1 610 100 Minus
Blast to na_te.dros performed 2019-03-15 22:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Uvir 6564 Dvir\Uvir VIRUVIR 6564bp 4576..4636 316..382 114 68.7 Plus

LP01162.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:33:43 Download gff for LP01162.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 1311207..1312148 525..1466 99 <- Minus
chr3L 1312208..1312609 123..524 98 <- Minus
chr3L 1312744..1312865 1..122 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:32:47 Download gff for LP01162.complete
Subject Subject Range Query Range Percent Splice Strand
CG9186-RA 1..924 332..1255 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:38:52 Download gff for LP01162.complete
Subject Subject Range Query Range Percent Splice Strand
CG9186-RA 1..924 332..1255 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:24:25 Download gff for LP01162.complete
Subject Subject Range Query Range Percent Splice Strand
CG9186-RB 1..924 332..1255 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:07:43 Download gff for LP01162.complete
Subject Subject Range Query Range Percent Splice Strand
CG9186-RA 1..924 332..1255 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:27:23 Download gff for LP01162.complete
Subject Subject Range Query Range Percent Splice Strand
CG9186-RB 1..924 332..1255 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:20:02 Download gff for LP01162.complete
Subject Subject Range Query Range Percent Splice Strand
CG9186-RB 1..1466 1..1466 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:38:52 Download gff for LP01162.complete
Subject Subject Range Query Range Percent Splice Strand
CG9186-RB 1..1466 1..1466 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:24:25 Download gff for LP01162.complete
Subject Subject Range Query Range Percent Splice Strand
CG9186-RB 1..1466 1..1466 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:07:43 Download gff for LP01162.complete
Subject Subject Range Query Range Percent Splice Strand
CG9186-RB 1..1466 1..1466 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:27:23 Download gff for LP01162.complete
Subject Subject Range Query Range Percent Splice Strand
CG9186-RB 1..1466 1..1466 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:33:43 Download gff for LP01162.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1311719..1312660 525..1466 100 <- Minus
3L 1312720..1313121 123..524 100 <- Minus
3L 1313256..1313377 1..122 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:33:43 Download gff for LP01162.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1311719..1312660 525..1466 100 <- Minus
3L 1312720..1313121 123..524 100 <- Minus
3L 1313256..1313377 1..122 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:33:43 Download gff for LP01162.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1311719..1312660 525..1466 100 <- Minus
3L 1312720..1313121 123..524 100 <- Minus
3L 1313256..1313377 1..122 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:24:25 Download gff for LP01162.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1311719..1312660 525..1466 100 <- Minus
arm_3L 1312720..1313121 123..524 100 <- Minus
arm_3L 1313256..1313377 1..122 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:43:53 Download gff for LP01162.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1311719..1312660 525..1466 100 <- Minus
3L 1312720..1313121 123..524 100 <- Minus
3L 1313256..1313377 1..122 100   Minus

LP01162.pep Sequence

Translation from 331 to 1254

> LP01162.pep
MQEAYVNINSIPTHIFTWGRWIEETITEKEIVICITGNPGLPGFYTEFAG
TLQKELGDLPVWVIGHAGHDDPPEASIREVPQLSGNEELFNLDGQIRHKI
AFIEKYVPSDVKIHLIGHSIGAWMILQLLENERIRSRIQKCYMLFPTVER
MMESPNGWVFTKVAMPLYSVFGYIFFSFFNFLPVWLRLMLIQIYFLIFSI
PRQFLGTALKYSKPSVAEKVVFLADDEMARVRGIQREIVEQNLDLLKFYY
GTTDGWVPISYYDQLKKDYPKVDAQLDTKKIDHAFVLRHSQPMAVIVRDM
IQQHRRV*

LP01162.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:41:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10065-PA 307 GF10065-PA 1..306 1..306 1535 91.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:41:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14609-PA 307 GG14609-PA 1..306 1..306 1611 97.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16231-PA 307 GH16231-PA 1..305 1..304 1241 73.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:27:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG9186-PA 307 CG9186-PA 1..307 1..307 1625 100 Plus
CG9186-PB 307 CG9186-PB 1..307 1..307 1625 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12271-PA 311 GI12271-PA 1..309 1..304 1302 77.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:41:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16075-PA 307 GL16075-PA 1..306 1..306 1471 86.3 Plus
Dper\GL20677-PA 105 GL20677-PA 10..95 66..173 358 62 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:41:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21598-PA 307 GA21598-PA 1..306 1..306 1467 85.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14223-PA 307 GM14223-PA 1..306 1..306 1613 98.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13485-PA 307 GD13485-PA 1..306 1..306 1624 99 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:41:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13207-PA 309 GJ13207-PA 1..309 1..304 1321 78 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:41:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20500-PA 310 GK20500-PA 1..306 1..306 1462 86.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:41:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20970-PA 307 GE20970-PA 1..306 1..306 1614 98 Plus

LP01162.hyp Sequence

Translation from 331 to 1254

> LP01162.hyp
MQEAYVNINSIPTHIFTWGRWIEETITEKEIVICITGNPGLPGFYTEFAG
TLQKELGDLPVWVIGHAGHDDPPEASIREVPQLSGNEELFNLDGQIRHKI
AFIEKYVPSDVKIHLIGHSIGAWMILQLLENERIRSRIQKCYMLFPTVER
MMESPNGWVFTKVAMPLYSVFGYIFFSFFNFLPVWLRLMLIQIYFLIFSI
PRQFLGTALKYSKPSVAEKVVFLADDEMARVRGIQREIVEQNLDLLKFYY
GTTDGWVPISYYDQLKKDYPKVDAQLDTKKIDHAFVLRHSQPMAVIVRDM
IQQHRRV*

LP01162.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:59:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG9186-PA 307 CG9186-PA 1..307 1..307 1625 100 Plus
CG9186-PB 307 CG9186-PB 1..307 1..307 1625 100 Plus