Clone LP01188 Report

Search the DGRC for LP01188

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:11
Well:88
Vector:pOT2
Associated Gene/TranscriptCG12104-RA
Protein status:LP01188.pep: gold
Preliminary Size:1442
Sequenced Size:1248

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12104 2001-01-01 Release 2 assignment
CG12104 2001-10-10 Blastp of sequenced clone
CG12104 2003-01-01 Sim4 clustering to Release 3
CG12104 2008-04-29 Release 5.5 accounting
CG12104 2008-08-15 Release 5.9 accounting
CG12104 2008-12-18 5.12 accounting

Clone Sequence Records

LP01188.complete Sequence

1248 bp (1248 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061531

> LP01188.complete
AGGAGCAAGCCAGTGCTTGAAAATACTGTCCCAACGCATTTAGCACATAC
CCGCCGGCGGTCACACTAATTAAGGCCCACGATAATAAAACGCCTGGCAT
TGTTTAATTTTATTTGTAAATAAGCCTGGGAGAATTGCAGGAGCGTCATG
AATCAGTTCCACACTCCCTCATTCGGCGACGAGGTGTTTGAGCTGACCGA
CACGCCGGCGGAGAGCCAGAGCCCCAGCCAAGCCTCGCGGAGAATGCTTA
GCCTGGATCAATCCATGTTGAACGACGATGACGAGGAAAATTGCGACACA
TATGCCAGCGGCGGCGGGCAGAACTTGCTGGTTCAGCCGGAGCAGCAGCA
GAACCAGGCCATGGCGCAAGCACCTCCTAAACCTCTGGCGCCCTTCGCTC
TGTTCTTTCGAGACACCGTGACGGCCATCAAGCAGCAGAATCCGACCTGT
TCGTTGGAGCAAATGCAAGTGATAGTGCAAACCATGTGGGAGTCCCTGGA
CGAGACGCAGAAGAACGTCTATGCCCTACGGCACGAGCAGGAGAAGCGCG
AGTATGTCCGTCTGATGAGGGGCTATCGCCACCAGCTGTCCGAGTCGGAG
GGTACGTCGGAGGCAGAGGCCCCACCAGCAGTAGCTACCAATCAGCCACC
TCCTCTAGTCACAACCAAATTGGAGTCTGTCGAGGATCTGCAACAGTCGG
TGGATGCCCAGCAGGAGCCGCCGCCCGATCAGATACAGCTCCTCACCGAA
GCGGCTAGGGTGCAGAAGTGCACACGGGAACAGTGCAATAAGCCAGCTAT
CATAAATCCGGACTGGGAGGACGAGTACTGCAGCAACGAGTGCGTCGTCA
TCCACTGCCGGAATGTATTCAACCACTGGGTAATATCCATGAACTCATAG
CTGCCACCCGCTACGTCGAATGTAGATTTAAACTCGTTGCATACGCTGCA
CAGCTCTAGCCTGGCAAGCCCACATTCGGCATGCTGAACGAATATTATTA
GGGATTATATGACTGGAAGCCACTTAACTATACGAAATTTATTGTAATCC
CAGATTCAATACTAATTACCATCTGTGGGGAATTTAAATGAATGCGGAAC
GCGCTTTGTATGATACTTTAATTGTAGAAAATAGCTAATAGATAACATGT
AGAACGGAAGAATAAGAATTTACAAAGCATTTGGTATGAGGCCCAATTAA
TACTAATTAATAAGTAATTTGTTTTCAAAAAAAAAAAAAAAAAAAAAA

LP01188.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:04:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG12104-RA 1542 CG12104-RA 101..1327 1..1227 6135 100 Plus
CG12104.a 1061 CG12104.a 70..1061 235..1226 4960 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:54:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 1600509..1601501 1226..235 4765 98.9 Minus
chr3L 24539361 chr3L 1602053..1602286 234..1 1140 99.1 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:45:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:54:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1600941..1601933 1227..235 4965 100 Minus
3L 28110227 3L 1602485..1602718 234..1 1170 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:28:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 1600941..1601933 1227..235 4965 100 Minus
3L 28103327 3L 1602485..1602718 234..1 1170 100 Minus
Blast to na_te.dros performed on 2019-03-15 13:54:49 has no hits.

LP01188.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:56:02 Download gff for LP01188.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 1600509..1601501 235..1226 98 <- Minus
chr3L 1602053..1602286 1..234 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:32:50 Download gff for LP01188.complete
Subject Subject Range Query Range Percent Splice Strand
CG12104-RA 1..753 148..900 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:38:54 Download gff for LP01188.complete
Subject Subject Range Query Range Percent Splice Strand
CG12104-RA 1..753 148..900 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:16:31 Download gff for LP01188.complete
Subject Subject Range Query Range Percent Splice Strand
CG12104-RA 1..753 148..900 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:07:44 Download gff for LP01188.complete
Subject Subject Range Query Range Percent Splice Strand
CG12104-RA 1..753 148..900 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:44:38 Download gff for LP01188.complete
Subject Subject Range Query Range Percent Splice Strand
CG12104-RA 1..753 148..900 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:20:04 Download gff for LP01188.complete
Subject Subject Range Query Range Percent Splice Strand
CG12104-RA 1..1226 1..1226 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:38:53 Download gff for LP01188.complete
Subject Subject Range Query Range Percent Splice Strand
CG12104-RA 1..1226 1..1226 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:16:31 Download gff for LP01188.complete
Subject Subject Range Query Range Percent Splice Strand
CG12104-RA 1..1182 45..1226 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:07:44 Download gff for LP01188.complete
Subject Subject Range Query Range Percent Splice Strand
CG12104-RA 1..1226 1..1226 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:44:38 Download gff for LP01188.complete
Subject Subject Range Query Range Percent Splice Strand
CG12104-RA 1..1182 45..1226 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:56:02 Download gff for LP01188.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1600942..1601933 235..1226 100 <- Minus
3L 1602485..1602718 1..234 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:56:02 Download gff for LP01188.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1600942..1601933 235..1226 100 <- Minus
3L 1602485..1602718 1..234 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:56:02 Download gff for LP01188.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1600942..1601933 235..1226 100 <- Minus
3L 1602485..1602718 1..234 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:16:31 Download gff for LP01188.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1600942..1601933 235..1226 100 <- Minus
arm_3L 1602485..1602718 1..234 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:43:54 Download gff for LP01188.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1600942..1601933 235..1226 100 <- Minus
3L 1602485..1602718 1..234 100   Minus

LP01188.pep Sequence

Translation from 147 to 899

> LP01188.pep
MNQFHTPSFGDEVFELTDTPAESQSPSQASRRMLSLDQSMLNDDDEENCD
TYASGGGQNLLVQPEQQQNQAMAQAPPKPLAPFALFFRDTVTAIKQQNPT
CSLEQMQVIVQTMWESLDETQKNVYALRHEQEKREYVRLMRGYRHQLSES
EGTSEAEAPPAVATNQPPPLVTTKLESVEDLQQSVDAQQEPPPDQIQLLT
EAARVQKCTREQCNKPAIINPDWEDEYCSNECVVIHCRNVFNHWVISMNS
*

LP01188.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:00:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24025-PA 258 GF24025-PA 1..255 1..250 809 65 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:00:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14588-PA 253 GG14588-PA 1..253 1..250 1154 90.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:00:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14874-PA 287 GH14874-PA 1..282 1..248 592 50.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:24:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG12104-PB 250 CG12104-PB 1..250 1..250 1323 100 Plus
CG12104-PA 250 CG12104-PA 1..250 1..250 1323 100 Plus
CG12104-PC 226 CG12104-PC 6..226 30..250 1170 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:00:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12846-PA 253 GI12846-PA 1..248 1..248 625 55.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:00:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20738-PA 271 GL20738-PA 4..268 1..250 761 57.6 Plus
Dper\GL15054-PA 173 GL15054-PA 4..158 1..179 275 41.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:00:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11397-PA 267 GA11397-PA 4..264 1..250 743 58.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:00:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14202-PA 251 GM14202-PA 1..251 1..250 1276 96 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:00:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17612-PA 251 GD17612-PA 1..251 1..250 1295 97.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:00:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12991-PA 284 GJ12991-PA 1..279 1..248 600 52.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:00:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17179-PA 304 GK17179-PA 1..299 1..250 646 49.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:00:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20948-PA 257 GE20948-PA 1..257 1..250 1196 91.1 Plus

LP01188.hyp Sequence

Translation from 147 to 899

> LP01188.hyp
MNQFHTPSFGDEVFELTDTPAESQSPSQASRRMLSLDQSMLNDDDEENCD
TYASGGGQNLLVQPEQQQNQAMAQAPPKPLAPFALFFRDTVTAIKQQNPT
CSLEQMQVIVQTMWESLDETQKNVYALRHEQEKREYVRLMRGYRHQLSES
EGTSEAEAPPAVATNQPPPLVTTKLESVEDLQQSVDAQQEPPPDQIQLLT
EAARVQKCTREQCNKPAIINPDWEDEYCSNECVVIHCRNVFNHWVISMNS
*

LP01188.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:53:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG12104-PB 250 CG12104-PB 1..250 1..250 1323 100 Plus
CG12104-PA 250 CG12104-PA 1..250 1..250 1323 100 Plus
CG12104-PC 226 CG12104-PC 6..226 30..250 1170 100 Plus