Clone LP01201 Report

Search the DGRC for LP01201

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:12
Well:1
Vector:pOT2
Associated Gene/Transcriptkay-RA
Protein status:LP01201.pep: gold
Sequenced Size:3555

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15507 2008-09-03 Manual selection by Ken Wan

Clone Sequence Records

LP01201.complete Sequence

3555 bp assembled on 2009-05-26

GenBank Submission: BT088433.1

> LP01201.complete
AAACGCGACTGCAGCAAACGGCAGCGGAAAGCCACGCGGCCGTCTCCCTC
TCACTCTCGTTCTCGCTCGCGCCACTCTCTCTGTCTCTCTCTCTCACCCC
CGTTAATCGGCCGCAGTCCATCAGTGCCACCCAACCTCCCCCGCCCCTAC
GCCCCACGCCCACTAGTGCTCTCCCGCTCGCGCGCGCCGCGAGCCACGTT
GGTTGGAGCGAGACAAAGATTCCCCGCCCCCCAAAGGAAATCCAGCCAAC
TTGTTGTTGTTACACTTGATTGTTTAACACTTTCACAAGTGCAAAGCCAG
AACATTCCCAACAAACCGTCAAAAAACTGTGTGATATCTGCAATACAGCA
ACGCTTTTTTCCCGCAGAGCGGTAGAAATCCGTGGATAATTACGAAATAT
TCAACCTAAAGTCGTTCAAAGTTCGATAAACAACGGTGTGTGGAGCGGGG
CGTGGTTCGCCCGACTTTAATCTACAGAATTGACTGGAAAAGGCCAAAAA
GGCGAAAAGAGAGTGTGTGTGTGTGTGCTCGTGTGCTGGTGTTTGATTGT
GTGTGTGAGTGCCAGCTGCACATGTAAGTTTTGTTTATAATCGCCAACTG
GAGAGCAGCAACAATGAAAGTCAAAGTGGAGCGCACAACGAAAAAGCCCG
CCATCAGAAAGCCCGAGGATCCAGATCCGGCGGAAGAGGACAGGGTCAAG
ATGGTGCAGGATGACCCAGAGGACCAGGAGAACCAGGCGGTGGATGAGGA
GGAGCTGGACTTTCTGCCCGCCGATCTAAGCGCTGCGATATCGACGGCGA
CAACGAAAATAGCAACACCGACGCGCAATCTTATCCTCGGCAACTTTGAG
ACCGGCCAGAGTGTTCTCACACTGACGACGCCCACGTTGACGCCGACCAC
CACGCGCAACATCGAGGACACACTGGGCCACTTGCTCTCGGACACGCAGA
CCGATCGTGTGGCTGGTTGCGCGGGATTTGCAGTGCCAAAGGTGCTACCC
AATGCCATTGATGTCCTGGGCATGGGTATTCCCACCGGTGTTTCGTCGCT
CCCACTTCAGCAGACATTCGATTTGAGCCTGGGGCAGGGCAGCGAGTCCG
AGGACTCCAACGCTTCGTACAACGATACGCAGATGAACGAGGAGCAGGAC
ACGACCGATACTTCAAGTGCCCATACGGACAGCACCTCGTACCAAGCTGG
CCACATCATGGCGGGCAGCGTGAACGGCGGCGGTGTCAACAACTTCTCCA
ATGTCCTGGCCGCCGTGAGCTCTAGCCGCGGATCGGCGTCGGTGGGCAGC
AGCAACGCGAATACCTCAAATACGCCGGCTCGTCGTGGCGGTGGCAGACG
CCCCAACCGGTCGACGAACATGACCCCGGAGGAGGAGCAGAAGCGGGCCG
TGCGCCGGGAGCGGAACAAACAGGCGGCGGCCCGTTGCCGCAAGAGGCGC
GTGGACCAGACCAACGAGCTCACCGAGGAGGTGGAGCAGCTGGAGAAGCG
GGGCGAGAGCATGCGCAAGGAGATCGAGGTGCTGACGAATAGCAAGAATC
AGCTGGAGTACCTTCTGGCCACCCACCGGGCCACCTGCCAAAAGATTCGC
TCCGACATGCTGAGCGTGGTCACCTGCAACGGTCTGATTGCCCCGGCCGG
ACTCCTGAGTGCAGGGAGCAGCGGCAGCGGCGCGAGCAGCCATCACAACC
ACAACAGCAACGACAGCAGCAACGGCACGATTACGGGCATGGACGCCACG
CTGAACTCCACCGGGAGGAGCAATTCACCCTTGGATCTCAAGCCGGCGGC
GAACATCGATAGCCTGCTGATGCACATCAAGGACGAGCCACTCGATGGCG
CCATCGACTCAGGATCCAGCCTGGACCAGGACGGTCCGCCGCCCAGCAAG
CGCATCACCTTGCCGCCCATGTCCACGATGCCGCACGTTCACTTGTCCAC
GATATTAACGCCCACCGGCGCCTCGTCGGGATCTCTGCAGACGCCGATCA
CGAGCACGGCGCCCGGCGGATTCGGCAGCGCCTTCCCGGTGACCTCCAAC
GGCAGCAGCATCAACAACATCAACAGCATCGGCAACAACATGAACTCTCC
CACGCTGAATGCGCATAACAAGGTGCCTAAGGAGCGGCCCAATACGCTGG
CTTTCCAGCGTCCTCTGGGCCAGATGCACCTCACCATGGCCAACAACAAG
GCGGGTGGGCCCACGCAGATCCAGGGCGTGCCCATCCAGACGCCCTCGAC
CGGCACCTTCAACTTCGACTCCCTGATGGACGGCGGCACTGGGCTAACGC
CCGTCTCCGGACCCCTCGTACCGAACAGCTCCTCCACGAACAAGCACCCG
CTGGAGCTGCCCACGCCCACCGCCGAGCCGTCCAAGCTGGTCAGCTTATA
ACCGGACCGGATCTGGGACGGGGATGGGGGCCGAGTCAGGATTAAGTTAA
GTTTTATATAGTTGGCAGGCAAACAACGGAAGGAAACCGCGAAGCACTTT
TCTAGTTGTAGGAGATGTTTTCATTTTTGTAATATGCTGTAATATGCGTA
AACGTGACGAATGTGTTGTTTCGTTAACTCTAATGTTTTTGTATTATTAT
CTTTATTATGGTTAATTTATGATTTCGCTATGTCTTTTACATACGCCGAG
GAGCTATGTACATATGTTATGTACTTGTAATTTGTGCAATTTTCAAACCT
CTTCATTGCGCGTTGTATATTTTCAAAAAATATAAGAACGCGAACGCGAA
CGCGAACGACCGACGATGCATGATGAGAATGATAAGGATAATGATGATAA
TAGGGCGTGTAGATTTGCAGGATGCGTTGTGATATTTATTATAAAACGAA
TACAAAAGATGCGAGGATGAAACAAAGTAGAAAGCAAACAGGAGCGTCTA
ATGAAAGGAACTAAGCCGGTTTTAAAATTGTACATTTAAACGAATCGTAA
AGCGTAAATATACTATAAAACAAAACAAAGTGAATATATATTCAGCATAC
AAACTAAATACAATGCCTTGAGAGAGAATTAAGAAATGCAAACCTTTATA
TATAGAGATCTACATACATATATGTATGCATGTACATTTAAAGCTAAACA
ATAATGGCGTTGAAGCGAGTTTTATATTGAGCAAAAGCAAATGTGAAATG
AGATAAATATACTTATTGTGTACTCTGTAAGCTGCAGTAGAAACCAAAAT
ATATTTTTACTAAACGCAACATTGCGCTATTTTCAAATACCATTTATAAG
AAATGACAAAAGCAAAGCAATTATTTAATATGTAATTATGTATTATGTAT
ACCTATATCTACCTACCCACAACCTTAAATCAAAAAACCCAAAACGATTC
AACAAAAGCTGATCAGGTAAAGCAACTCTCGCCAGTTTCCACACTAAATT
CTCAGAATATTCAAAATTTTAATCTATACAAAACCAAACCGATTGATAGC
AAATAAATGCACTTATAAGGGCAGAAAAACACCAAAATTTAAAAATGAAA
TGGAATAAAATAGAAATAAAAAGACCGACAAAACCTAAAAAAAAAAAAAA
AAAAA

LP01201.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:31:04
Subject Length Description Subject Range Query Range Score Percent Strand
kay-RA 3748 kay-RA 143..3681 1..3539 17695 100 Plus
kay.i 4001 kay.i 118..3656 1..3539 17695 100 Plus
kay.a 3305 kay.a 59..3305 290..3536 16235 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:36:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 25614354..25616726 1164..3536 11685 99.5 Plus
chr3R 27901430 chr3R 25595541..25596375 1..835 4115 99.5 Plus
chr3R 27901430 chr3R 25613960..25614287 836..1163 1625 99.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:45:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:36:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29791787..29794162 1164..3539 11880 100 Plus
3R 32079331 3R 29772987..29773821 1..835 4175 100 Plus
3R 32079331 3R 29791393..29791720 836..1163 1640 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:47:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 29532618..29534993 1164..3539 11880 100 Plus
3R 31820162 3R 29513818..29514652 1..835 4175 100 Plus
3R 31820162 3R 29532224..29532551 836..1163 1640 100 Plus
Blast to na_te.dros performed 2019-03-16 18:36:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2360..2468 1665..1773 158 60.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2925..3024 1678..1771 153 65 Plus
Dbuz\INE-1 1467 Dbuz\INE-1 ISBU1 1467bp 539..700 3224..3061 149 59.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2361..2409 2047..2095 146 77.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1539..1578 2056..2095 146 85 Plus
roo 9092 roo DM_ROO 9092bp 1075..1140 1665..1727 142 72.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2472..2528 2047..2103 141 71.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2430..2473 2047..2090 139 79.5 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 1595..1676 3218..3301 127 66.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1521..1552 1696..1727 124 87.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1493..1551 2038..2095 121 69.5 Plus
TAHRE 10463 TAHRE OSV 10463bp 7951..8117 3293..3468 120 58.9 Plus
Dbuz\BuT4 1447 Dbuz\BuT4 BUT4 1447bp 386..423 3084..3047 118 78.9 Minus
roo 9092 roo DM_ROO 9092bp 1066..1128 1665..1727 117 65.1 Plus

LP01201.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:37:18 Download gff for LP01201.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 25595636..25596375 96..835 92 -> Plus
chr3R 25613960..25614287 836..1163 99 -> Plus
chr3R 25614354..25614852 1164..1662 99 == Plus
chr3R 25614926..25616726 1736..3536 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:59:22 Download gff for LP01201.complete
Subject Subject Range Query Range Percent Splice Strand
kay-RA 1..1788 614..2401 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:46:33 Download gff for LP01201.complete
Subject Subject Range Query Range Percent Splice Strand
kay-RA 1..1788 614..2401 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:49:52 Download gff for LP01201.complete
Subject Subject Range Query Range Percent Splice Strand
kay-RA 1..1788 614..2401 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:43:59 Download gff for LP01201.complete
Subject Subject Range Query Range Percent Splice Strand
kay-RA 1..1788 614..2401 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:59:22 Download gff for LP01201.complete
Subject Subject Range Query Range Percent Splice Strand
kay-RA 9..3501 1..3493 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:46:33 Download gff for LP01201.complete
Subject Subject Range Query Range Percent Splice Strand
kay-RA 94..3586 1..3493 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:52 Download gff for LP01201.complete
Subject Subject Range Query Range Percent Splice Strand
kay-RA 96..3588 1..3493 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:43:59 Download gff for LP01201.complete
Subject Subject Range Query Range Percent Splice Strand
kay-RA 96..3585 1..3490 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:37:18 Download gff for LP01201.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29772987..29773821 1..835 100 -> Plus
3R 29791393..29791720 836..1163 100 -> Plus
3R 29791787..29794159 1164..3536 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:37:18 Download gff for LP01201.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29772987..29773821 1..835 100 -> Plus
3R 29791393..29791720 836..1163 100 -> Plus
3R 29791787..29794159 1164..3536 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:37:18 Download gff for LP01201.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29772987..29773821 1..835 100 -> Plus
3R 29791393..29791720 836..1163 100 -> Plus
3R 29791787..29794159 1164..3536 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:52 Download gff for LP01201.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25598709..25599543 1..835 100 -> Plus
arm_3R 25617115..25617442 836..1163 100 -> Plus
arm_3R 25617509..25619881 1164..3536 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:21:54 Download gff for LP01201.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29513818..29514652 1..835 100 -> Plus
3R 29532224..29532551 836..1163 100 -> Plus
3R 29532618..29534990 1164..3536 100   Plus

LP01201.pep Sequence

Translation from 613 to 2400

> LP01201.pep
MKVKVERTTKKPAIRKPEDPDPAEEDRVKMVQDDPEDQENQAVDEEELDF
LPADLSAAISTATTKIATPTRNLILGNFETGQSVLTLTTPTLTPTTTRNI
EDTLGHLLSDTQTDRVAGCAGFAVPKVLPNAIDVLGMGIPTGVSSLPLQQ
TFDLSLGQGSESEDSNASYNDTQMNEEQDTTDTSSAHTDSTSYQAGHIMA
GSVNGGGVNNFSNVLAAVSSSRGSASVGSSNANTSNTPARRGGGRRPNRS
TNMTPEEEQKRAVRRERNKQAAARCRKRRVDQTNELTEEVEQLEKRGESM
RKEIEVLTNSKNQLEYLLATHRATCQKIRSDMLSVVTCNGLIAPAGLLSA
GSSGSGASSHHNHNSNDSSNGTITGMDATLNSTGRSNSPLDLKPAANIDS
LLMHIKDEPLDGAIDSGSSLDQDGPPPSKRITLPPMSTMPHVHLSTILTP
TGASSGSLQTPITSTAPGGFGSAFPVTSNGSSINNINSIGNNMNSPTLNA
HNKVPKERPNTLAFQRPLGQMHLTMANNKAGGPTQIQGVPIQTPSTGTFN
FDSLMDGGTGLTPVSGPLVPNSSSTNKHPLELPTPTAEPSKLVSL*

LP01201.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:27:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23375-PA 529 GF23375-PA 107..529 143..595 1317 68.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:27:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11694-PA 549 GG11694-PA 25..549 74..595 2232 86.7 Plus
Dere\GG11693-PA 82 GG11693-PA 1..74 1..74 343 89.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:27:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14331-PA 796 GH14331-PA 382..796 160..595 1033 56.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:38:03
Subject Length Description Subject Range Query Range Score Percent Strand
kay-PA 595 CG33956-PA 1..595 1..595 3046 100 Plus
kay-PG 646 CG33956-PG 1..646 1..595 2984 92.1 Plus
kay-PB 546 CG33956-PB 25..546 74..595 2676 99.8 Plus
kay-PF 755 CG33956-PF 235..755 75..595 2673 100 Plus
kay-PD 722 CG33956-PD 202..722 75..595 2673 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:27:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10426-PA 784 GI10426-PA 359..784 159..595 1150 61.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:27:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23721-PA 526 GL23721-PA 25..526 74..595 1189 61.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:27:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\kay-PB 598 GA30111-PB 1..598 1..595 1180 55.6 Plus
Dpse\kay-PD 778 GA30111-PD 352..778 152..595 1166 64.8 Plus
Dpse\kay-PA 738 GA30111-PA 312..738 152..595 1163 65.1 Plus
Dpse\kay-PC 558 GA13774-PA 131..558 151..595 1161 64.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:27:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12821-PA 549 GM12821-PA 25..549 74..595 2368 94.9 Plus
Dsec\GM12820-PA 75 GM12820-PA 1..74 1..74 365 94.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:27:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21465-PA 498 GD21465-PA 25..498 74..595 1999 86.1 Plus
Dsim\GD21464-PA 75 GD21464-PA 1..74 1..74 367 94.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:27:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10642-PA 792 GJ10642-PA 337..792 152..595 1192 60.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:27:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11924-PA 620 GK11924-PA 50..620 46..595 1018 54 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:27:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23884-PA 552 GE23884-PA 25..552 74..595 2266 90.7 Plus
Dyak\GE23883-PA 95 GE23883-PA 1..75 1..74 305 88 Plus

LP01201.hyp Sequence

Translation from 613 to 2400

> LP01201.hyp
MKVKVERTTKKPAIRKPEDPDPAEEDRVKMVQDDPEDQENQAVDEEELDF
LPADLSAAISTATTKIATPTRNLILGNFETGQSVLTLTTPTLTPTTTRNI
EDTLGHLLSDTQTDRVAGCAGFAVPKVLPNAIDVLGMGIPTGVSSLPLQQ
TFDLSLGQGSESEDSNASYNDTQMNEEQDTTDTSSAHTDSTSYQAGHIMA
GSVNGGGVNNFSNVLAAVSSSRGSASVGSSNANTSNTPARRGGGRRPNRS
TNMTPEEEQKRAVRRERNKQAAARCRKRRVDQTNELTEEVEQLEKRGESM
RKEIEVLTNSKNQLEYLLATHRATCQKIRSDMLSVVTCNGLIAPAGLLSA
GSSGSGASSHHNHNSNDSSNGTITGMDATLNSTGRSNSPLDLKPAANIDS
LLMHIKDEPLDGAIDSGSSLDQDGPPPSKRITLPPMSTMPHVHLSTILTP
TGASSGSLQTPITSTAPGGFGSAFPVTSNGSSINNINSIGNNMNSPTLNA
HNKVPKERPNTLAFQRPLGQMHLTMANNKAGGPTQIQGVPIQTPSTGTFN
FDSLMDGGTGLTPVSGPLVPNSSSTNKHPLELPTPTAEPSKLVSL*

LP01201.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:43
Subject Length Description Subject Range Query Range Score Percent Strand
kay-PA 595 CG33956-PA 1..595 1..595 3046 100 Plus
kay-PG 646 CG33956-PG 1..646 1..595 2984 92.1 Plus
kay-PB 546 CG33956-PB 25..546 74..595 2676 99.8 Plus
kay-PF 755 CG33956-PF 235..755 75..595 2673 100 Plus
kay-PD 722 CG33956-PD 202..722 75..595 2673 100 Plus