Clone LP01270 Report

Search the DGRC for LP01270

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:12
Well:70
Vector:pOT2
Associated Gene/TranscriptCpr65Ec-RA
Protein status:LP01270.pep: gold
Sequenced Size:555

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Cpr65Ec-RA 2009-04-28 Manual selection by Sue Celniker

Clone Sequence Records

LP01270.complete Sequence

555 bp assembled on 2009-07-23

GenBank Submission: BT088941.1

> LP01270.complete
TGACAACAAGTCAGCCCCCAGCCCAATCACCAATTCACAAAAAAAAAAAA
AATGAACAAATTCTTCGTCCTTGCCGTCGCCGCCCTGGCTGTTTCCTGTG
TCCAGGCCGACTCCTTCGACGCCCGAGCCGAGACTCGCGAGTATAAGAGC
GACCTGAAGGAGGATGGCAGCTATGCCTATCAGTACCAGACGTCCAATGG
CATCGCTGGCCAGGAATCGGGCGTGGGTGGTTACTATGCCAGCGGCTCGA
ACGCCTACTACGCCCCCGATGGCCAGCTCATCCAGTTGACCTACACCGCC
GACAGCAATGGCTACCACCCGGCCGGCGCCCATCTGCCCACACCTCCTCC
AATCCCGGCTTCCATCCTGAAGTCACTGGAGTACATCCGCACCCATCCCC
AGCAGGAGAGTCGCCAGGGTCAAGGACGATTCTAGATGGGCTTGCCACCA
CCACCATCACATGTTGAGCGTTATTCGAGCTAGTTTTAAGTCATTTGAAA
ATAAACTTTGTTTGAGCCATCAACCATTTCCATAAACAAAAAAAAAAAAA
AAAAA

LP01270.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:31:41
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr65Ec-RA 756 Cpr65Ec-RA 137..674 1..539 2655 99.8 Plus
Cpr65Eb-RA 1077 Cpr65Eb-RA 318..358 256..296 160 92.6 Plus
Cpr65Eb.a 1228 Cpr65Eb.a 469..509 256..296 160 92.6 Plus
Cpr65Eb-RA 1077 Cpr65Eb-RA 220..310 158..248 140 76.9 Plus
Cpr65Eb.a 1228 Cpr65Eb.a 371..461 158..248 140 76.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:48:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 7085599..7086072 64..537 2325 99.4 Plus
chr3L 24539361 chr3L 7080504..7080741 395..158 305 75.2 Minus
chr3L 24539361 chr3L 7085465..7085526 1..63 265 98.4 Plus
chr3L 24539361 chr3L 10881541..10881608 334..401 205 86.8 Plus
chr3L 24539361 chr3L 10883339..10883407 334..402 180 84.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:45:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:48:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7093368..7093843 64..539 2380 100 Plus
3L 28110227 3L 7088280..7088517 395..158 275 74.4 Minus
3L 28110227 3L 7093234..7093295 1..63 265 98.4 Plus
3L 28110227 3L 10890491..10890558 334..401 205 86.8 Plus
3L 28110227 3L 10892291..10892359 334..402 180 84.1 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:27:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 7086468..7086943 64..539 2380 100 Plus
3L 28103327 3L 7086334..7086395 1..63 275 98.4 Plus
3L 28103327 3L 10883591..10883658 334..401 205 86.7 Plus
3L 28103327 3L 7081479..7081519 296..256 160 92.6 Minus
3L 28103327 3L 7081527..7081617 248..158 140 76.9 Minus
Blast to na_te.dros performed on 2019-03-15 18:48:39 has no hits.

LP01270.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:49:26 Download gff for LP01270.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 7085465..7085526 1..63 98 -> Plus
chr3L 7085599..7086072 64..537 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:11:42 Download gff for LP01270.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr65Ec-RA 1..384 52..435 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:59:56 Download gff for LP01270.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr65Ec-RA 1..384 52..435 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:32:31 Download gff for LP01270.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr65Ec-RA 1..384 52..435 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:01:52 Download gff for LP01270.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr65Ec-RA 1..384 52..435 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-23 16:52:13 Download gff for LP01270.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr65Ec-RA 26..561 1..537 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:59:55 Download gff for LP01270.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr65Ec-RA 26..561 1..537 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:32:31 Download gff for LP01270.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr65Ec-RA 31..566 1..537 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:01:52 Download gff for LP01270.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr65Ec-RA 31..566 1..537 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:49:26 Download gff for LP01270.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7093234..7093295 1..63 98 -> Plus
3L 7093368..7093841 64..537 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:49:26 Download gff for LP01270.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7093234..7093295 1..63 98 -> Plus
3L 7093368..7093841 64..537 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:49:26 Download gff for LP01270.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7093234..7093295 1..63 98 -> Plus
3L 7093368..7093841 64..537 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:32:31 Download gff for LP01270.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7086334..7086395 1..63 98 -> Plus
arm_3L 7086468..7086941 64..537 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:51:39 Download gff for LP01270.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7086468..7086941 64..537 100   Plus
3L 7086334..7086395 1..63 98 -> Plus

LP01270.hyp Sequence

Translation from 2 to 434

> LP01270.hyp
TTSQPPAQSPIHKKKKMNKFFVLAVAALAVSCVQADSFDARAETREYKSD
LKEDGSYAYQYQTSNGIAGQESGVGGYYASGSNAYYAPDGQLIQLTYTAD
SNGYHPAGAHLPTPPPIPASILKSLEYIRTHPQQESRQGQGRF*

LP01270.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:03:45
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr65Ec-PA 127 CG8634-PA 1..127 17..143 666 100 Plus
Cpr65Eb-PA 179 CG8638-PA 1..124 17..135 374 62.1 Plus
Cpr67Fa2-PA 134 CG18349-PA 1..118 17..133 336 54.2 Plus
Cpr67Fa1-PA 134 CG7941-PA 2..118 20..133 335 53.8 Plus
Cpr67Fb-PA 122 CG18348-PA 6..116 23..134 334 57.1 Plus

LP01270.pep Sequence

Translation from 51 to 434

> LP01270.pep
MNKFFVLAVAALAVSCVQADSFDARAETREYKSDLKEDGSYAYQYQTSNG
IAGQESGVGGYYASGSNAYYAPDGQLIQLTYTADSNGYHPAGAHLPTPPP
IPASILKSLEYIRTHPQQESRQGQGRF*

LP01270.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:13:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25006-PA 129 GF25006-PA 1..129 1..127 462 87.6 Plus
Dana\GF24793-PA 181 GF24793-PA 1..127 1..122 390 60.6 Plus
Dana\GF10617-PA 121 GF10617-PA 6..114 7..116 315 56.4 Plus
Dana\GF24202-PA 115 GF24202-PA 5..114 4..122 262 45 Plus
Dana\GF10615-PA 140 GF10615-PA 24..118 23..117 251 58.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:13:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14401-PA 127 GG14401-PA 1..127 1..127 648 96.9 Plus
Dere\GG14999-PA 178 GG14999-PA 1..121 1..116 376 63.6 Plus
Dere\GG15458-PA 134 GG15458-PA 22..118 21..117 322 61.9 Plus
Dere\GG15456-PA 134 GG15456-PA 22..118 21..117 322 61.9 Plus
Dere\GG15459-PA 122 GG15459-PA 6..114 7..116 309 54.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:13:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15387-PA 126 GH15387-PA 2..126 3..127 464 79.2 Plus
Dgri\GH16084-PA 157 GH16084-PA 1..121 1..116 347 57.9 Plus
Dgri\GH15388-PA 153 GH15388-PA 1..125 1..126 299 58.7 Plus
Dgri\GH16083-PA 123 GH16083-PA 1..117 1..118 296 51.3 Plus
Dgri\GH15299-PA 118 GH15299-PA 4..117 5..118 291 49.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:35
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr65Ec-PA 127 CG8634-PA 1..127 1..127 666 100 Plus
Cpr65Eb-PA 179 CG8638-PA 1..124 1..119 374 62.1 Plus
Cpr67Fa2-PA 134 CG18349-PA 1..118 1..117 336 54.2 Plus
Cpr67Fa1-PA 134 CG7941-PA 2..118 4..117 335 53.8 Plus
Cpr67Fb-PA 122 CG18348-PA 6..116 7..118 334 57.1 Plus
Edg78E-PB 122 CG7673-PB 11..121 14..124 291 49.1 Plus
Edg78E-PA 122 CG7673-PA 11..121 14..124 291 49.1 Plus
Pcp-PA 184 CG3440-PA 7..119 5..118 264 44.8 Plus
Cpr78Cc-PA 119 CG7658-PA 1..118 1..118 260 48.3 Plus
Cpr49Aa-PB 144 CG30045-PB 2..138 3..125 226 38 Plus
Cpr65Ea-PA 127 CG8640-PA 34..115 38..119 223 48.8 Plus
Cpr49Ae-PA 134 CG8505-PA 1..134 1..121 223 38.8 Plus
Cpr49Af-PB 126 CG8510-PB 3..126 5..124 214 35.2 Plus
Cpr49Af-PA 126 CG8510-PA 3..126 5..124 214 35.2 Plus
Cpr47Ea-PA 135 CG9079-PA 33..127 18..104 210 44.2 Plus
Cpr65Az-PA 239 CG12330-PA 120..207 32..110 206 46.6 Plus
Cpr47Ef-PD 601 CG13214-PD 146..225 38..109 190 47.5 Plus
Cpr47Ef-PC 612 CG13214-PC 146..225 38..109 190 47.5 Plus
Lcp2-PB 126 CG8697-PB 4..117 5..116 185 33.9 Plus
Lcp2-PA 126 CG8697-PA 4..117 5..116 185 33.9 Plus
Cpr78Cb-PB 140 CG7663-PB 32..130 17..117 184 43.6 Plus
Cpr78Cb-PA 140 CG7663-PA 32..130 17..117 184 43.6 Plus
Lcp1-PB 130 CG11650-PB 13..121 7..116 182 35.5 Plus
Lcp1-PA 130 CG11650-PA 13..121 7..116 182 35.5 Plus
Lcp4-PB 112 CG2044-PB 2..112 4..119 181 37.1 Plus
Lcp4-PA 112 CG2044-PA 2..112 4..119 181 37.1 Plus
Cpr49Ah-PA 190 CG8515-PA 55..146 30..112 179 38 Plus
Cpr47Eg-PA 117 CG9070-PA 2..117 3..119 174 36.1 Plus
Cpr78Ca-PA 127 CG11310-PA 10..117 5..116 170 36.4 Plus
Lcp3-PB 112 CG2043-PB 2..111 4..118 165 33.9 Plus
Lcp3-PA 112 CG2043-PA 2..111 4..118 165 33.9 Plus
Cpr49Ab-PA 259 CG30042-PA 165..254 32..115 163 39.6 Plus
Cpr11B-PB 195 CG2555-PB 76..155 30..104 148 39 Plus
Cpr11B-PA 197 CG2555-PA 76..155 30..104 148 39 Plus
Cpr65Au-PB 106 CG18778-PB 4..100 2..90 141 33.7 Plus
Cpr65Au-PA 106 CG18778-PA 4..100 2..90 141 33.7 Plus
Cpr49Ac-PE 285 CG8502-PE 126..220 31..127 141 30.7 Plus
Cpr49Ac-PA 294 CG8502-PA 135..229 31..127 141 30.7 Plus
Cpr49Ac-PG 315 CG8502-PG 156..250 31..127 141 30.7 Plus
Cpr49Ac-PF 315 CG8502-PF 156..250 31..127 141 30.7 Plus
Cpr49Ac-PC 324 CG8502-PC 165..259 31..127 141 30.7 Plus
Lcp65Ad-PB 108 CG6955-PB 3..106 5..98 138 36.2 Plus
Lcp65Ad-PA 108 CG6955-PA 3..106 5..98 138 36.2 Plus
Lcp65Af-PA 100 CG10533-PA 2..100 3..101 136 35.5 Plus
Cpr65Ax2-PB 102 CG18777-PB 11..100 5..99 135 35 Plus
Cpr65Ax2-PA 102 CG18777-PA 11..100 5..99 135 35 Plus
Cpr65Ax1-PA 102 CG34270-PA 11..100 5..99 135 35 Plus
Lcp65Ag2-PA 105 CG10534-PA 2..103 3..99 134 36.2 Plus
Lcp65Ag1-PA 105 CG10530-PA 2..103 3..99 134 36.2 Plus
Lcp65Ag3-PA 105 CG18779-PA 2..103 3..99 134 36.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:13:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12993-PA 126 GI12993-PA 2..126 3..127 423 73.6 Plus
Dmoj\GI12347-PA 159 GI12347-PA 23..128 19..124 355 65.4 Plus
Dmoj\GI12346-PA 108 GI12346-PA 7..100 23..116 300 62.8 Plus
Dmoj\GI12010-PA 117 GI12010-PA 1..117 1..118 299 53.3 Plus
Dmoj\GI12994-PA 134 GI12994-PA 1..122 1..125 299 53.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:13:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25022-PA 129 GL25022-PA 1..129 1..127 517 84.5 Plus
Dper\GL11748-PA 122 GL11748-PA 2..114 4..116 318 54.9 Plus
Dper\GL24679-PA 120 GL24679-PA 1..116 1..116 270 47.9 Plus
Dper\GL24590-PA 121 GL24590-PA 5..113 4..116 268 46.5 Plus
Dper\GL24678-PA 119 GL24678-PA 1..119 1..119 266 45.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:13:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23589-PA 96 GA23589-PA 1..93 1..91 399 82.8 Plus
Dpse\GA21228-PA 183 GA21228-PA 17..127 9..118 386 64.9 Plus
Dpse\GA23698-PA 190 GA23698-PA 17..127 9..118 386 64.9 Plus
Dpse\GA14899-PA 122 GA14899-PA 2..114 4..116 318 54.9 Plus
Dpse\GA20516-PA 121 GA20516-PA 5..113 4..116 273 47.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:13:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14815-PA 127 GM14815-PA 1..127 1..127 654 97.6 Plus
Dsec\GM13790-PA 179 GM13790-PA 1..124 1..119 376 61.3 Plus
Dsec\GM25234-PA 122 GM25234-PA 6..117 7..119 322 55.8 Plus
Dsec\GM22150-PA 122 GM22150-PA 5..121 4..124 284 47.5 Plus
Dsec\GM25232-PA 134 GM25232-PA 1..126 1..122 260 54 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:13:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13990-PA 127 GD13990-PA 1..127 1..127 657 97.6 Plus
Dsim\GD13091-PA 179 GD13091-PA 1..124 1..119 380 62.9 Plus
Dsim\GD12126-PA 122 GD12126-PA 5..121 4..124 284 47.5 Plus
Dsim\GD14264-PA 134 GD14264-PA 1..126 1..122 260 54 Plus
Dsim\GD14265-PA 134 GD14265-PA 1..126 1..122 258 54 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:13:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13136-PA 127 GJ13136-PA 2..127 3..127 441 75.4 Plus
Dvir\GJ12238-PA 160 GJ12238-PA 6..128 4..124 366 60.5 Plus
Dvir\GJ13137-PA 139 GJ13137-PA 1..123 1..124 347 58.4 Plus
Dvir\GJ12237-PA 123 GJ12237-PA 6..115 5..116 294 54.5 Plus
Dvir\GJ13281-PA 119 GJ13281-PA 1..115 1..116 286 51.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:13:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16649-PA 134 GK16649-PA 26..133 20..127 475 81.5 Plus
Dwil\GK17540-PA 191 GK17540-PA 1..127 1..121 382 58.3 Plus
Dwil\GK17780-PA 112 GK17780-PA 4..104 16..116 296 58.4 Plus
Dwil\GK20466-PA 121 GK20466-PA 2..119 1..118 261 43.7 Plus
Dwil\GK20425-PA 121 GK20425-PA 4..121 5..124 259 42.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:13:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21591-PA 127 GE21591-PA 1..127 1..127 658 98.4 Plus
Dyak\GE20445-PA 172 GE20445-PA 9..125 4..119 382 63.2 Plus
Dyak\GE21769-PA 134 GE21769-PA 24..118 23..117 324 62.1 Plus
Dyak\GE21770-PA 122 GE21770-PA 6..114 7..116 307 54.5 Plus
Dyak\GE22714-PA 120 GE22714-PA 1..120 1..124 288 47.2 Plus