Clone LP01339 Report

Search the DGRC for LP01339

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:13
Well:39
Vector:pOT2
Associated Gene/TranscriptCG10814-RA
Protein status:LP01339.pep: gold
Preliminary Size:1539
Sequenced Size:1459

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10814 2001-01-01 Release 2 assignment
CG10814 2001-07-04 Blastp of sequenced clone
CG10814 2003-01-01 Sim4 clustering to Release 3
CG10814 2008-04-29 Release 5.5 accounting
CG10814 2008-08-15 Release 5.9 accounting
CG10814 2008-12-18 5.12 accounting

Clone Sequence Records

LP01339.complete Sequence

1459 bp (1459 high quality bases) assembled on 2001-07-04

GenBank Submission: AY052032

> LP01339.complete
GAAGACATAGTGGTAGGTTGCTCAAGATGTTCCAAGCGGACCGCCGAGAT
TTGCCCAGCCAACCGCTTAAGTTGGCTCTGCCAAAGGAGCAGGATCAGTC
GCGCCTGGTTCAGGTTCCCGATCCTGATCGTCGGGACATGCAGTTTCCAG
ACATTTGGCTGCGCGATAATTGCCGCTGCGAGGAGTGCTATCTGCCACAG
ACACTGAGTAGATTGCCCCAGCTGTGGAACCATCTGGACACCAGTGTGCG
GGTCCTGCGGCAGAGCGTGGACGTGGACCAGAGGGTCCTGTGTATAGAGT
GGTCCGATGGACATACCTCCCAGTATCCGTTCAGTTGGCTGAGGGAGCGG
GACTTCTCATACGCGAATCGCCAGCGTTACCTGCGTGACTTTTACCGCCC
GGAGCAGAAGTTGTGGAGCGGTCTGGACTTTGAGAAAATCCGTCAGGTGT
TCTACTACCAAGAACTGCTCGATTGCGATTCGGCGTTGCAGCAATGGCTC
CAGCATCTGGCAGTTTACGGAGTGGCCATGGTCAAGGAAGCCCCTCTCGA
TATGGACGTCCTTCGGAGATTGTCCAACCGAGTGGGCTTCATGAGGCGCA
CCACCTATGGAGAGGAGTTCAGTGTTCGGGCTCAGCCTGGAGGCAGCAAC
TACGCCTACTTGGCCGCACCACTCCCGCTACACACGGATATGCCCTACTT
TGAGTACCTGCCCGGAGTGACCATGTTGCACACCTTGGAGCAGTCCGCGT
CGCCCGGGGGTGTCAATCTGCTGGCCGATGCCTTCTATGTGGCGGAGGTG
ATGAGGGAACGCTATCCGGAGCAGTTCCGGGTTCTTTGCCAGACTCCCGT
GGACTGGGCGGACATCGGAAGCGACGGCGATCTGCAGTTTCACAATATCT
GGAGGGCACCGGTCATCAACTTGGACGCGGAGGGCCGGTGTGTGCGCATC
AACCACAGCATTCCGCAGCGCGACAGCCACTTTAGCGTGCCGGTGGAGCA
GGTGCGTCCGTGGTACGAGGCGATGGCCACCTTTGTGGGCCTGGCCCACG
AGCACTCCTGCAGATTCAAGACCACGCCCGGCGACGTGCTCACGTTCGAC
AATTTGCGCCTGGTCCACGGACGTACCGGGTACGACGACACGGACCGCAA
TGTGCGCCACATTCTGGGCGCCTTCGTTGACTGGGACATTGTGTACTCGC
GCCTGAGGGTCCTGCGGAATGCCAAAGCCACCTGATGCTCCTTAGATAGC
AGGAGCAGCAAGCACATGTTATGTTATGGCTACATTAATTAGCCATCTAT
CAATGCCAAAATGCTTTGATTGACATCGCAATGTGGTAGCAATAGACAGA
GTAGAATCATTAGATTACTTTCGAATTTATTGTGCTCGAGAAATTAAACC
ATTTATTGACATTTTGAATAAATACTATTTTAATGGTTTCTAAAAAAAAA
AAAAAAAAA

LP01339.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:27:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG10814-RA 1525 CG10814-RA 69..1511 1..1443 7215 100 Plus
CG5321-RB 1526 CG5321-RB 968..1101 886..1019 220 77.6 Plus
CG5321.a 1717 CG5321.a 968..1101 886..1019 220 77.6 Plus
CG5321-RB 1526 CG5321-RB 1159..1208 1077..1126 145 86 Plus
CG5321.a 1717 CG5321.a 1159..1208 1077..1126 145 86 Plus
CG5321-RB 1526 CG5321-RB 659..701 577..619 140 88.3 Plus
CG5321.a 1717 CG5321.a 659..701 577..619 140 88.3 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:54:56
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 9264137..9265055 919..1 4565 99.8 Minus
chr2R 21145070 chr2R 9263312..9263841 1441..920 2385 97.4 Minus
chrX 22417052 chrX 14570930..14571220 920..1210 195 71.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:45:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:54:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13376796..13377714 919..1 4595 100 Minus
2R 25286936 2R 13375973..13376496 1443..920 2620 100 Minus
X 23542271 X 14680592..14680882 920..1210 195 71.1 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:50:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 13377995..13378913 919..1 4595 100 Minus
2R 25260384 2R 13377172..13377695 1443..920 2620 100 Minus
X 23527363 X 14688847..14688896 1077..1126 145 86 Plus
X 23527363 X 14688276..14688318 577..619 140 88.3 Plus
Blast to na_te.dros performed on 2019-03-15 13:54:54 has no hits.

LP01339.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:56:05 Download gff for LP01339.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 9263312..9263841 920..1441 97 <- Minus
chr2R 9264137..9265055 1..919 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:32:57 Download gff for LP01339.complete
Subject Subject Range Query Range Percent Splice Strand
CG10814-RA 1..1209 27..1235 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:14:28 Download gff for LP01339.complete
Subject Subject Range Query Range Percent Splice Strand
CG10814-RA 1..1209 27..1235 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:16:38 Download gff for LP01339.complete
Subject Subject Range Query Range Percent Splice Strand
CG10814-RA 1..1209 27..1235 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:45:48 Download gff for LP01339.complete
Subject Subject Range Query Range Percent Splice Strand
CG10814-RA 1..1209 27..1235 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:44:43 Download gff for LP01339.complete
Subject Subject Range Query Range Percent Splice Strand
CG10814-RA 1..1209 27..1235 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:07:38 Download gff for LP01339.complete
Subject Subject Range Query Range Percent Splice Strand
CG10814-RA 1..1441 1..1441 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:14:28 Download gff for LP01339.complete
Subject Subject Range Query Range Percent Splice Strand
CG10814-RA 1..1441 1..1441 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:16:38 Download gff for LP01339.complete
Subject Subject Range Query Range Percent Splice Strand
CG10814-RA 18..1458 1..1441 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:45:48 Download gff for LP01339.complete
Subject Subject Range Query Range Percent Splice Strand
CG10814-RA 1..1441 1..1441 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:44:43 Download gff for LP01339.complete
Subject Subject Range Query Range Percent Splice Strand
CG10814-RA 18..1458 1..1441 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:56:05 Download gff for LP01339.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13375975..13376496 920..1441 100 <- Minus
2R 13376796..13377714 1..919 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:56:05 Download gff for LP01339.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13375975..13376496 920..1441 100 <- Minus
2R 13376796..13377714 1..919 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:56:05 Download gff for LP01339.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13375975..13376496 920..1441 100 <- Minus
2R 13376796..13377714 1..919 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:16:38 Download gff for LP01339.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9263480..9264001 920..1441 100 <- Minus
arm_2R 9264301..9265219 1..919 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:23:38 Download gff for LP01339.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13377174..13377695 920..1441 100 <- Minus
2R 13377995..13378913 1..919 100   Minus

LP01339.hyp Sequence

Translation from 2 to 1234

> LP01339.hyp
RHSGRLLKMFQADRRDLPSQPLKLALPKEQDQSRLVQVPDPDRRDMQFPD
IWLRDNCRCEECYLPQTLSRLPQLWNHLDTSVRVLRQSVDVDQRVLCIEW
SDGHTSQYPFSWLRERDFSYANRQRYLRDFYRPEQKLWSGLDFEKIRQVF
YYQELLDCDSALQQWLQHLAVYGVAMVKEAPLDMDVLRRLSNRVGFMRRT
TYGEEFSVRAQPGGSNYAYLAAPLPLHTDMPYFEYLPGVTMLHTLEQSAS
PGGVNLLADAFYVAEVMRERYPEQFRVLCQTPVDWADIGSDGDLQFHNIW
RAPVINLDAEGRCVRINHSIPQRDSHFSVPVEQVRPWYEAMATFVGLAHE
HSCRFKTTPGDVLTFDNLRLVHGRTGYDDTDRNVRHILGAFVDWDIVYSR
LRVLRNAKAT*

LP01339.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG10814-PA 402 CG10814-PA 1..402 9..410 2173 100 Plus
CG5321-PC 413 CG5321-PC 32..405 31..405 1142 54.7 Plus
CG5321-PB 413 CG5321-PB 32..405 31..405 1142 54.7 Plus
CG14630-PA 406 CG14630-PA 30..405 36..408 959 46.4 Plus
CG4335-PA 364 CG4335-PA 11..360 44..404 316 25.1 Plus

LP01339.pep Sequence

Translation from 26 to 1234

> LP01339.pep
MFQADRRDLPSQPLKLALPKEQDQSRLVQVPDPDRRDMQFPDIWLRDNCR
CEECYLPQTLSRLPQLWNHLDTSVRVLRQSVDVDQRVLCIEWSDGHTSQY
PFSWLRERDFSYANRQRYLRDFYRPEQKLWSGLDFEKIRQVFYYQELLDC
DSALQQWLQHLAVYGVAMVKEAPLDMDVLRRLSNRVGFMRRTTYGEEFSV
RAQPGGSNYAYLAAPLPLHTDMPYFEYLPGVTMLHTLEQSASPGGVNLLA
DAFYVAEVMRERYPEQFRVLCQTPVDWADIGSDGDLQFHNIWRAPVINLD
AEGRCVRINHSIPQRDSHFSVPVEQVRPWYEAMATFVGLAHEHSCRFKTT
PGDVLTFDNLRLVHGRTGYDDTDRNVRHILGAFVDWDIVYSRLRVLRNAK
AT*

LP01339.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:02:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11192-PA 409 GF11192-PA 1..402 1..401 1806 83.6 Plus
Dana\GF19297-PA 405 GF19297-PA 38..403 34..400 1162 57.2 Plus
Dana\GF22125-PA 407 GF22125-PA 41..401 38..397 984 48.6 Plus
Dana\GF23210-PA 732 GF23210-PA 11..349 36..384 293 25.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:02:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22499-PA 409 GG22499-PA 1..401 1..401 1977 91 Plus
Dere\GG17850-PA 469 GG17850-PA 29..404 20..396 1135 54.6 Plus
Dere\GG12825-PA 405 GG12825-PA 29..404 28..400 987 48 Plus
Dere\GG15479-PA 364 GG15479-PA 13..360 38..396 323 26.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:02:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20273-PA 391 GH20273-PA 25..386 38..399 1482 75.1 Plus
Dgri\GH12513-PA 426 GH12513-PA 46..404 38..397 1123 57.3 Plus
Dgri\GH11991-PA 408 GH11991-PA 28..402 24..397 1021 48.9 Plus
Dgri\GH14171-PA 368 GH14171-PA 11..364 36..396 317 27 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:54:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG10814-PA 402 CG10814-PA 1..402 1..402 2173 100 Plus
CG5321-PC 413 CG5321-PC 32..405 23..397 1142 54.7 Plus
CG5321-PB 413 CG5321-PB 32..405 23..397 1142 54.7 Plus
CG14630-PA 406 CG14630-PA 30..405 28..400 959 46.4 Plus
CG4335-PA 364 CG4335-PA 11..360 36..396 316 25.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:02:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19441-PA 421 GI19441-PA 49..414 33..398 1425 70.8 Plus
Dmoj\GI14867-PA 429 GI14867-PA 46..405 38..398 1137 57.5 Plus
Dmoj\GI15613-PA 409 GI15613-PA 29..403 24..397 998 47.1 Plus
Dmoj\GI10544-PA 367 GI10544-PA 13..363 38..396 303 25.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:02:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11099-PA 413 GL11099-PA 1..412 1..402 1673 76.2 Plus
Dper\GL20147-PA 431 GL20147-PA 33..383 31..386 1017 53.6 Plus
Dper\GL14222-PA 380 GL14222-PA 14..378 38..401 980 50 Plus
Dper\GL24093-PA 365 GL24093-PA 13..361 38..396 329 27.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:02:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10576-PA 413 GA10576-PA 1..412 1..402 1672 76.2 Plus
Dpse\GA18803-PA 404 GA18803-PA 33..402 31..401 1151 57.3 Plus
Dpse\GA22704-PA 405 GA22704-PA 28..403 27..401 1035 50.4 Plus
Dpse\GA18117-PA 365 GA18117-PA 13..361 38..396 330 27.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:02:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20285-PA 409 GM20285-PA 1..402 1..402 2092 97 Plus
Dsec\GM12042-PA 416 GM12042-PA 32..404 23..396 1139 55.3 Plus
Dsec\GM19110-PA 405 GM19110-PA 29..404 28..400 987 47.7 Plus
Dsec\GM23194-PA 364 GM23194-PA 13..360 38..396 302 26 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:02:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25765-PA 409 GD25765-PA 1..402 1..402 2084 96.5 Plus
Dsim\GD17176-PA 416 GD17176-PA 32..404 23..396 1148 55.6 Plus
Dsim\GD16541-PA 255 GD16541-PA 7..254 157..400 724 52.8 Plus
Dsim\GD20068-PA 364 GD20068-PA 13..360 38..396 310 26.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:02:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21194-PA 392 GJ21194-PA 26..387 38..399 1405 70.4 Plus
Dvir\GJ19528-PA 420 GJ19528-PA 50..409 38..398 1125 57.7 Plus
Dvir\GJ15218-PA 404 GJ15218-PA 24..398 24..397 1011 47.9 Plus
Dvir\GJ24198-PA 367 GJ24198-PA 11..363 36..396 329 27.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:02:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17984-PA 405 GK17984-PA 18..403 21..402 1449 69.2 Plus
Dwil\GK14708-PA 411 GK14708-PA 36..406 30..401 1167 55.9 Plus
Dwil\GK16355-PA 408 GK16355-PA 40..402 36..397 1004 47.8 Plus
Dwil\GK22732-PA 367 GK22732-PA 8..363 33..396 336 27.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:02:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13368-PA 409 GE13368-PA 1..402 1..402 2008 92.5 Plus
Dyak\GE17150-PA 413 GE17150-PA 32..406 23..398 1156 55.1 Plus
Dyak\GE16657-PA 405 GE16657-PA 29..404 28..400 992 48.3 Plus
Dyak\GE25077-PA 364 GE25077-PA 13..360 38..396 319 26 Plus