Clone LP01645 Report

Search the DGRC for LP01645

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:16
Well:45
Vector:pOT2
Associated Gene/TranscriptLcp1-RA
Protein status:LP01645.pep: gold
Preliminary Size:543
Sequenced Size:582

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11650 2002-01-01 Sim4 clustering to Release 2
CG11650 2003-01-01 Sim4 clustering to Release 3
Lcp1 2008-04-29 Release 5.5 accounting
Lcp1 2008-08-15 Release 5.9 accounting
Lcp1 2008-12-18 5.12 accounting

Clone Sequence Records

LP01645.complete Sequence

582 bp (582 high quality bases) assembled on 2002-05-18

GenBank Submission: BT011193

> LP01645.complete
TTCGTTCTCGACCAGACAGAAGTCAGCCAATATGTTCAAGTTTGTCATGA
TCTGCGCAGTTTTGGGCCTGGCGGTGGCCAACCCCCCGGTGCCCCATTCC
CTAGGCCGTTCGGAGGATGTCCACGCCGATGTCCTTTCCCAATCCGATGA
TGTTCGTGCCGATGGATTCGATTCCAGCCTGCACACCTCCAACGGAATCG
AGCAGGCCGCCAGCGGTGATGCCCATGGCAACATCCACGGCAACTTCGGC
TGGATCTCACCCGAGGGCGAGCACGTCGAGGTTAAGTACGTCGCCAATGA
GAACGGATACCAGCCCTCGGGAGCCTGGATCCCCACTCCTCCTCCAATCC
CAGAGGCCATCGCCCGCGCCGTCGCCTGGCTGGAGTCCCACCCACCAGCA
CCCGAGCACCCCCGTCATCACTAGAACCTCTATGAAAGCGGATCGCACTA
CGGACTGTTCCCCGAAGACCTTTCGAACTATTAGCTTAAGTAATCGTACT
GTTTGTAAAATACACGCAATTGTTAACGGCAGAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LP01645.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:02:47
Subject Length Description Subject Range Query Range Score Percent Strand
Lcp1-RA 535 Lcp1-RA 1..535 1..535 2675 100 Plus
Lcp2-RA 547 Lcp2-RA 105..423 106..424 1310 94 Plus
Lcp2.a 792 Lcp2.a 350..668 106..424 1310 94 Plus
Lcp2-RA 547 Lcp2-RA 12..62 1..51 210 94.1 Plus
Lcp2.a 792 Lcp2.a 257..307 1..51 210 94.1 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:10:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 4318163..4318651 532..44 2430 99.8 Minus
chr2R 21145070 chr2R 4321617..4321935 424..106 1310 94 Minus
chr2R 21145070 chr2R 4320544..4320776 351..123 270 76.4 Minus
chr2R 21145070 chr2R 4318714..4318758 45..1 225 100 Minus
chr3L 24539361 chr3L 10881468..10881573 256..361 200 79.2 Plus
chr2R 21145070 chr2R 4322046..4322090 45..1 195 95.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 19:46:17
Subject Length Description Subject Range Query Range Score Percent Strand
Lcp1Psi-RA 456 CR30367-RA 92..184 123..212 200 82.7 Plus
Lcp1Psi-RA 456 CR30367-RA 223..324 251..351 200 81.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:10:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8430634..8431125 535..44 2460 100 Minus
2R 25286936 2R 8434091..8434409 424..106 1310 94 Minus
2R 25286936 2R 8433018..8433250 351..123 270 76.4 Minus
2R 25286936 2R 8431188..8431232 45..1 225 100 Minus
3L 28110227 3L 10890418..10890523 256..361 200 79.2 Plus
2R 25286936 2R 8434520..8434564 45..1 195 95.6 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:34:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 8431833..8432324 535..44 2460 100 Minus
2R 25260384 2R 8435290..8435608 424..106 1310 94 Minus
2R 25260384 2R 8432387..8432431 45..1 225 100 Minus
2R 25260384 2R 8434357..8434449 212..123 200 82.7 Minus
2R 25260384 2R 8434217..8434318 351..251 200 81.3 Minus
2R 25260384 2R 8435719..8435763 45..1 195 95.5 Minus
Blast to na_te.dros performed on 2019-03-16 22:10:29 has no hits.

LP01645.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:11:07 Download gff for LP01645.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 4318163..4318651 44..532 99 <- Minus
chr2R 4318716..4318758 1..43 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:33:13 Download gff for LP01645.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp1-RA 1..393 32..424 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:43:58 Download gff for LP01645.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp1-RA 1..393 32..424 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:11:46 Download gff for LP01645.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp1-RA 1..393 32..424 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:36:07 Download gff for LP01645.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp1-RA 1..393 32..424 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:36:15 Download gff for LP01645.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp1-RA 1..393 32..424 100   Plus
Sim4 to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:46:18 has no hits.
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:18:46 Download gff for LP01645.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp1-RA 1..532 1..532 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:43:58 Download gff for LP01645.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp1-RA 1..532 1..532 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:11:46 Download gff for LP01645.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp1-RA 1..532 1..532 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:36:07 Download gff for LP01645.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp1-RA 1..532 1..532 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:36:15 Download gff for LP01645.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp1-RA 12..543 1..532 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:11:07 Download gff for LP01645.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8430637..8431125 44..532 100 <- Minus
2R 8431190..8431232 1..43 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:11:07 Download gff for LP01645.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8430637..8431125 44..532 100 <- Minus
2R 8431190..8431232 1..43 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:11:07 Download gff for LP01645.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8430637..8431125 44..532 100 <- Minus
2R 8431190..8431232 1..43 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:11:46 Download gff for LP01645.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4318142..4318630 44..532 100 <- Minus
arm_2R 4318695..4318737 1..43 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:08:32 Download gff for LP01645.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8431836..8432324 44..532 100 <- Minus
2R 8432389..8432431 1..43 100   Minus

LP01645.hyp Sequence

Translation from 0 to 423

> LP01645.hyp
SFSTRQKSANMFKFVMICAVLGLAVANPPVPHSLGRSEDVHADVLSQSDD
VRADGFDSSLHTSNGIEQAASGDAHGNIHGNFGWISPEGEHVEVKYVANE
NGYQPSGAWIPTPPPIPEAIARAVAWLESHPPAPEHPRHH*

LP01645.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:08:28
Subject Length Description Subject Range Query Range Score Percent Strand
Lcp1-PB 130 CG11650-PB 1..130 11..140 712 100 Plus
Lcp1-PA 130 CG11650-PA 1..130 11..140 712 100 Plus
Lcp2-PB 126 CG8697-PB 1..126 11..140 624 90 Plus
Lcp2-PA 126 CG8697-PA 1..126 11..140 624 90 Plus
Lcp4-PB 112 CG2044-PB 1..109 11..131 310 48.8 Plus

LP01645.pep Sequence

Translation from 31 to 423

> LP01645.pep
MFKFVMICAVLGLAVANPPVPHSLGRSEDVHADVLSQSDDVRADGFDSSL
HTSNGIEQAASGDAHGNIHGNFGWISPEGEHVEVKYVANENGYQPSGAWI
PTPPPIPEAIARAVAWLESHPPAPEHPRHH*

LP01645.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:11:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12590-PA 130 GF12590-PA 1..130 1..130 559 81.5 Plus
Dana\GF12589-PA 128 GF12589-PA 1..128 1..130 517 79.2 Plus
Dana\GF12356-PA 112 GF12356-PA 19..109 31..121 278 54.9 Plus
Dana\GF12355-PA 112 GF12355-PA 27..109 39..121 254 56.6 Plus
Dana\GF10274-PA 119 GF10274-PA 16..117 29..122 250 51.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:11:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10645-PA 130 GG10645-PA 1..130 1..130 638 91.5 Plus
Dere\GG10643-PA 126 GG10643-PA 1..126 1..130 484 82.3 Plus
Dere\GG23356-PA 112 GG23356-PA 1..109 1..121 317 48.8 Plus
Dere\GG23355-PA 112 GG23355-PA 27..109 39..121 260 59 Plus
Dere\GG13245-PA 121 GG13245-PA 1..116 1..124 224 36 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:11:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20893-PA 265 GH20893-PA 146..265 5..130 408 63.5 Plus
Dgri\GH20994-PA 124 GH20994-PA 1..121 1..125 401 62.4 Plus
Dgri\GH20812-PA 117 GH20812-PA 1..117 1..130 312 54.5 Plus
Dgri\GH15299-PA 118 GH15299-PA 1..115 1..121 212 37.4 Plus
Dgri\GH16160-PA 120 GH16160-PA 1..117 1..125 212 34.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:16
Subject Length Description Subject Range Query Range Score Percent Strand
Lcp1-PB 130 CG11650-PB 1..130 1..130 712 100 Plus
Lcp1-PA 130 CG11650-PA 1..130 1..130 712 100 Plus
Lcp2-PB 126 CG8697-PB 1..126 1..130 624 90 Plus
Lcp2-PA 126 CG8697-PA 1..126 1..130 624 90 Plus
Lcp4-PB 112 CG2044-PB 1..109 1..121 310 48.8 Plus
Lcp4-PA 112 CG2044-PA 1..109 1..121 310 48.8 Plus
Lcp3-PB 112 CG2043-PB 1..109 1..121 281 46.3 Plus
Lcp3-PA 112 CG2043-PA 1..109 1..121 281 46.3 Plus
Cpr67Fa1-PA 134 CG7941-PA 1..117 1..121 234 38.5 Plus
Cpr67Fa2-PA 134 CG18349-PA 1..117 1..121 233 38.5 Plus
Edg78E-PB 122 CG7673-PB 1..116 1..124 222 36 Plus
Edg78E-PA 122 CG7673-PA 1..116 1..124 222 36 Plus
Cpr78Cc-PA 119 CG7658-PA 1..119 1..124 219 39.1 Plus
Cpr67Fb-PA 122 CG18348-PA 19..114 27..121 198 36.5 Plus
Cpr49Aa-PB 144 CG30045-PB 12..133 10..125 198 38.4 Plus
Cpr65Ea-PA 127 CG8640-PA 1..116 1..125 194 33.6 Plus
Cpr47Eg-PA 117 CG9070-PA 4..116 4..123 193 36 Plus
Cpr65Eb-PA 179 CG8638-PA 25..130 27..130 188 34.9 Plus
Cpr65Ec-PA 127 CG8634-PA 7..116 13..121 182 35.5 Plus
Cpr47Ef-PD 601 CG13214-PD 130..226 16..115 170 36.7 Plus
Cpr47Ef-PC 612 CG13214-PC 130..226 16..115 170 36.7 Plus
Cpr49Ae-PA 134 CG8505-PA 30..131 34..123 163 39.2 Plus
Pcp-PA 184 CG3440-PA 4..117 1..121 154 32.8 Plus
Cpr47Ea-PA 135 CG9079-PA 12..129 5..111 151 33.1 Plus
Cpr49Af-PB 126 CG8510-PB 21..118 33..121 147 30.6 Plus
Cpr49Af-PA 126 CG8510-PA 21..118 33..121 147 30.6 Plus
Cpr65Az-PA 239 CG12330-PA 109..206 25..114 146 34 Plus
Cpr49Ab-PA 259 CG30042-PA 138..254 14..120 143 33.3 Plus
Lcp65Ab1-PA 104 CG32400-PA 5..102 5..104 141 30.3 Plus
Lcp65Ab2-PA 104 CG18773-PA 5..102 5..104 141 30.3 Plus
Cpr78Cb-PB 140 CG7663-PB 55..128 46..120 141 37.3 Plus
Cpr78Cb-PA 140 CG7663-PA 55..128 46..120 141 37.3 Plus
Cpr65Ax2-PB 102 CG18777-PB 5..100 5..104 135 28.7 Plus
Cpr65Ax2-PA 102 CG18777-PA 5..100 5..104 135 28.7 Plus
Cpr65Ax1-PA 102 CG34270-PA 5..100 5..104 135 28.7 Plus
Cpr78Ca-PA 127 CG11310-PA 46..121 46..125 135 37.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:11:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20903-PA 122 GI20903-PA 1..122 1..126 424 63.5 Plus
Dmoj\GI20904-PA 119 GI20904-PA 1..119 1..126 404 59.5 Plus
Dmoj\GI20905-PA 121 GI20905-PA 1..119 1..126 395 59.5 Plus
Dmoj\GI20899-PA 150 GI20899-PA 1..145 1..130 377 54.7 Plus
Dmoj\GI18692-PA 144 GI18692-PA 1..134 6..125 374 56.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:11:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10863-PA 126 GL10863-PA 1..126 1..130 425 70 Plus
Dper\GL10864-PA 137 GL10864-PA 1..137 1..130 385 60.6 Plus
Dper\GL24679-PA 120 GL24679-PA 1..120 1..125 262 48 Plus
Dper\GL22414-PA 112 GL22414-PA 19..109 31..121 251 51.6 Plus
Dper\GL20440-PA 112 GL20440-PA 19..109 31..121 251 51.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:11:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24514-PA 138 GA24514-PA 1..135 1..130 487 72.1 Plus
Dpse\GA21266-PA 126 GA21266-PA 1..126 1..130 424 69.2 Plus
Dpse\GA20507-PA 120 GA20507-PA 1..120 1..125 258 47.2 Plus
Dpse\GA15201-PA 112 GA15201-PA 19..109 31..121 250 51.6 Plus
Dpse\GA24647-PA 112 GA24647-PA 19..109 31..121 250 51.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:11:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20690-PA 130 GM20690-PA 1..130 1..130 640 93.8 Plus
Dsec\GM20688-PA 126 GM20688-PA 1..126 1..130 565 83.1 Plus
Dsec\GM20689-PA 123 GM20689-PA 1..118 1..130 331 56.5 Plus
Dsec\GM21031-PA 112 GM21031-PA 1..109 1..121 308 48.8 Plus
Dsec\GM22150-PA 122 GM22150-PA 1..116 1..124 223 36 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:11:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10171-PA 130 GD10171-PA 1..130 1..130 644 94.6 Plus
Dsim\GD10560-PA 112 GD10560-PA 21..109 33..121 278 58.4 Plus
Dsim\GD22274-PA 112 GD22274-PA 21..109 33..121 278 58.4 Plus
Dsim\GD12126-PA 122 GD12126-PA 1..116 1..124 223 36 Plus
Dsim\GD14949-PA 120 GD14949-PA 19..120 27..125 209 41.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:11:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20634-PA 126 GJ20634-PA 1..126 1..130 435 63.1 Plus
Dvir\GJ20631-PA 166 GJ20631-PA 1..149 1..125 401 56.6 Plus
Dvir\GJ21708-PA 131 GJ21708-PA 16..131 15..130 394 64.7 Plus
Dvir\GJ20635-PA 117 GJ20635-PA 1..117 6..126 381 59.5 Plus
Dvir\GJ20637-PA 117 GJ20637-PA 1..117 1..126 360 54.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:11:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21815-PA 129 GK21815-PA 1..129 1..130 457 69.2 Plus
Dwil\GK21499-PA 114 GK21499-PA 19..114 31..126 280 54.2 Plus
Dwil\GK20466-PA 121 GK20466-PA 2..117 1..121 235 40.5 Plus
Dwil\GK21497-PA 112 GK21497-PA 1..112 1..126 233 47.6 Plus
Dwil\GK17540-PA 191 GK17540-PA 1..122 1..121 213 35.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:11:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23045-PA 130 GE23045-PA 1..130 1..130 622 89.2 Plus
Dyak\GE23024-PA 126 GE23024-PA 1..126 1..130 570 83.8 Plus
Dyak\GE19198-PA 112 GE19198-PA 1..109 1..121 310 48.8 Plus
Dyak\GE22345-PA 121 GE22345-PA 1..116 1..124 217 35.2 Plus
Dyak\GE21770-PA 122 GE21770-PA 1..114 1..121 200 33.6 Plus