Clone LP01708 Report

Search the DGRC for LP01708

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:17
Well:8
Vector:pOT2
Associated Gene/TranscriptbetaTry-RA
Protein status:LP01708.pep: gold
Sequenced Size:831

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18211 2003-01-01 Sim4 clustering to Release 3
CG18211 2004-10-04 Blastp of sequenced clone
betaTry 2008-04-29 Release 5.5 accounting
betaTry 2008-08-15 Release 5.9 accounting
betaTry 2008-12-18 5.12 accounting

Clone Sequence Records

LP01708.complete Sequence

831 bp assembled on 2006-11-09

GenBank Submission: BT016077

> LP01708.complete
ACCATGCTGAAGTTCCTGATCCTGTTGTCGGCTGTAGCCTGCGCCCTGGG
AGGCACCATCCCCGAGGGTCTCCTGCCCCAGTTGGATGGCCGCATTGTCG
GCGGTACTGCTACCACCATCAGCAGCTTCCCCTGGCAGATCTCCCTGCAG
CGCAGTGGCAGCCACTCCTGCGGTGGATCCATCTACTCCGCCAGGGTGAT
CGTGACCGCCGCTCACTGCCTGCAGTCCGTGTCCGCCTCCTCCCTGCAGA
TCCGCGCCGGATCCAGCTACTGGAGCTCTGGTGGCGTCGTCGCCAAGGTT
TCCTCTTTCAAGAACCACGAGGGTTACAACGCCAACACCATGGTCAACGA
CATCGCTGTGCTCCATCTGAGCTCCTCTCTGAGCTTCAGCTCCACCATCA
AGGCCATCGGTCTGGCTAGCTCCAACCCCGCCAACGGTGCTGCTGCCTCC
GTCTCCGGATGGGGTACCGAGTCCTCTGGCTCCAGCTCCATTCCCTCCCA
GCTGCGTTATGTCAACGTGAACATCGTCAGCCAGAGCCGGTGCTCTTCTT
CCTCCTATGGCTACGGAAACCAGATCAAGAGCTCCATGATCTGCGCTTTT
GCCAGCGGCAAGGACTCGTGCCAGGGTGACTCCGGTGGCCCACTGGTCTC
CGGCGGAGTCCTCGTCGGTGTTGTCTCCTGGGGATACGGATGTGCTGCCG
CTAACTACCCCGGTGTCTATGCCGATGTTGCTGCCCTCCGCTCCTGGGTG
ATCAACAACGCCTAATTATTTTTCGAAATAAATCATATATGAACAGTTAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LP01708.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:12:04
Subject Length Description Subject Range Query Range Score Percent Strand
betaTry-RA 798 betaTry-RA 1..798 1..798 3990 100 Plus
CG30025-RA 762 CG30025-RA 376..762 379..765 1335 89.6 Plus
gammaTry-RA 810 gammaTry-RA 390..794 379..783 1290 87.9 Plus
gammaTry-RA 810 gammaTry-RA 12..299 1..288 1065 91.3 Plus
CG30025-RA 762 CG30025-RA 1..285 4..288 1050 91.2 Plus
CG30025-RA 762 CG30025-RA 298..350 301..353 235 96.2 Plus
gammaTry-RA 810 gammaTry-RA 312..364 301..353 235 96.2 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:39:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 7233790..7234587 1..798 3990 100 Plus
chr2R 21145070 chr2R 7241016..7241813 798..1 2655 88.8 Minus
chr2R 21145070 chr2R 7242780..7243569 1..790 2450 87.3 Plus
chr2R 21145070 chr2R 7236527..7237309 783..1 2445 87.5 Minus
chr2R 21145070 chr2R 7238275..7239057 1..783 2445 87.5 Plus
chr2R 21145070 chr2R 7231797..7232544 750..3 2390 88 Minus
chr2R 21145070 chr2R 7233145..7233465 357..37 285 72.6 Minus
chr2R 21145070 chr2R 7232771..7232940 731..562 280 77.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:46:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:39:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11346339..11347136 1..798 3990 100 Plus
2R 25286936 2R 11353565..11354362 798..1 2655 88.8 Minus
2R 25286936 2R 11355330..11356119 1..790 2450 87.3 Plus
2R 25286936 2R 11349076..11349858 783..1 2445 87.5 Minus
2R 25286936 2R 11350824..11351606 1..783 2445 87.5 Plus
2R 25286936 2R 11344346..11345093 750..3 2390 88 Minus
2R 25286936 2R 11345694..11346014 357..37 285 72.6 Minus
2R 25286936 2R 11345320..11345489 731..562 280 77.6 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:06:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 11347538..11348335 1..798 3990 100 Plus
2R 25260384 2R 11345545..11346292 750..3 2390 87.9 Minus
2R 25260384 2R 11354764..11355183 798..379 1500 90.4 Minus
2R 25260384 2R 11356907..11357318 379..790 1295 87.6 Plus
2R 25260384 2R 11352401..11352805 379..783 1290 87.9 Plus
2R 25260384 2R 11350275..11350679 783..379 1290 87.9 Minus
2R 25260384 2R 11355274..11355561 288..1 1065 91.3 Minus
2R 25260384 2R 11350770..11351057 288..1 1065 91.3 Minus
2R 25260384 2R 11356529..11356816 1..288 1065 91.3 Plus
2R 25260384 2R 11352023..11352310 1..288 1065 91.3 Plus
2R 25260384 2R 11350705..11350757 353..301 235 96.2 Minus
2R 25260384 2R 11356829..11356881 301..353 235 96.2 Plus
2R 25260384 2R 11352323..11352375 301..353 235 96.2 Plus
2R 25260384 2R 11355209..11355261 353..301 235 96.2 Minus
2R 25260384 2R 11346558..11346641 692..609 225 84.5 Minus
2R 25260384 2R 11347145..11347213 105..37 180 84 Minus
2R 25260384 2R 11358597..11358654 671..728 170 86.2 Plus
2R 25260384 2R 11346893..11346937 357..313 150 88.8 Minus
Blast to na_te.dros performed on 2019-03-15 23:39:29 has no hits.

LP01708.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:40:31 Download gff for LP01708.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 7233790..7234587 1..798 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:33:19 Download gff for LP01708.complete
Subject Subject Range Query Range Percent Splice Strand
betaTry-RA 1..762 4..765 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:18:57 Download gff for LP01708.complete
Subject Subject Range Query Range Percent Splice Strand
betaTry-RA 1..762 4..765 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:52:07 Download gff for LP01708.complete
Subject Subject Range Query Range Percent Splice Strand
betaTry-RA 1..762 4..765 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:33:37 Download gff for LP01708.complete
Subject Subject Range Query Range Percent Splice Strand
betaTry-RA 1..762 4..765 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:44:26 Download gff for LP01708.complete
Subject Subject Range Query Range Percent Splice Strand
betaTry-RA 1..762 4..765 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:47:18 Download gff for LP01708.complete
Subject Subject Range Query Range Percent Splice Strand
betaTry-RA 1..798 1..798 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:18:57 Download gff for LP01708.complete
Subject Subject Range Query Range Percent Splice Strand
betaTry-RA 1..798 1..798 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:52:07 Download gff for LP01708.complete
Subject Subject Range Query Range Percent Splice Strand
betaTry-RA 5..802 1..798 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:33:37 Download gff for LP01708.complete
Subject Subject Range Query Range Percent Splice Strand
betaTry-RA 1..798 1..798 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:44:26 Download gff for LP01708.complete
Subject Subject Range Query Range Percent Splice Strand
betaTry-RA 15..812 1..798 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:40:31 Download gff for LP01708.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11346339..11347136 1..798 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:40:31 Download gff for LP01708.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11346339..11347136 1..798 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:40:31 Download gff for LP01708.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11346339..11347136 1..798 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:52:07 Download gff for LP01708.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7233844..7234641 1..798 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:48:27 Download gff for LP01708.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11347538..11348335 1..798 100   Plus

LP01708.hyp Sequence

Translation from 0 to 764

> LP01708.hyp
TMLKFLILLSAVACALGGTIPEGLLPQLDGRIVGGTATTISSFPWQISLQ
RSGSHSCGGSIYSARVIVTAAHCLQSVSASSLQIRAGSSYWSSGGVVAKV
SSFKNHEGYNANTMVNDIAVLHLSSSLSFSSTIKAIGLASSNPANGAAAS
VSGWGTESSGSSSIPSQLRYVNVNIVSQSRCSSSSYGYGNQIKSSMICAF
ASGKDSCQGDSGGPLVSGGVLVGVVSWGYGCAAANYPGVYADVAALRSWV
INNA*

LP01708.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:01
Subject Length Description Subject Range Query Range Score Percent Strand
betaTry-PB 253 CG18211-PB 1..253 2..254 1286 100 Plus
betaTry-PA 253 CG18211-PA 1..253 2..254 1286 100 Plus
CG30025-PA 253 CG30025-PA 1..253 2..254 1163 88.1 Plus
gammaTry-PA 253 CG30028-PA 1..253 2..254 1158 87.7 Plus
deltaTry-PA 253 CG12351-PA 1..253 2..254 1158 87.7 Plus

LP01708.pep Sequence

Translation from 3 to 764

> LP01708.pep
MLKFLILLSAVACALGGTIPEGLLPQLDGRIVGGTATTISSFPWQISLQR
SGSHSCGGSIYSARVIVTAAHCLQSVSASSLQIRAGSSYWSSGGVVAKVS
SFKNHEGYNANTMVNDIAVLHLSSSLSFSSTIKAIGLASSNPANGAAASV
SGWGTESSGSSSIPSQLRYVNVNIVSQSRCSSSSYGYGNQIKSSMICAFA
SGKDSCQGDSGGPLVSGGVLVGVVSWGYGCAAANYPGVYADVAALRSWVI
NNA*

LP01708.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:21:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12547-PA 253 GF12547-PA 1..253 1..253 1052 87.7 Plus
Dana\GF12546-PA 256 GF12546-PA 1..253 1..253 1040 82.6 Plus
Dana\GF12403-PA 256 GF12403-PA 1..253 1..253 1016 84.2 Plus
Dana\GF12402-PA 256 GF12402-PA 1..253 1..253 880 61.3 Plus
Dana\GF13692-PA 261 GF13692-PA 18..256 16..251 753 64 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:21:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\betaTry-PA 253 GG20194-PA 1..253 1..253 1052 89.3 Plus
Dere\alphaTry-PA 256 GG22661-PA 1..253 1..253 1030 85.4 Plus
Dere\gammaTry-PA 253 GG22658-PA 1..253 1..253 1021 87 Plus
Dere\deltaTry-PA 253 GG20195-PA 1..253 1..253 1015 86.2 Plus
Dere\epsilonTry-PA 256 GG22660-PA 1..253 1..253 886 63.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:21:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22926-PA 256 GH22926-PA 1..253 1..253 1070 80.6 Plus
Dgri\GH22924-PA 256 GH22924-PA 1..253 1..253 1061 80.2 Plus
Dgri\GH22925-PA 254 GH22925-PA 1..253 1..253 1023 81.4 Plus
Dgri\GH22927-PA 256 GH22927-PA 1..253 1..253 1003 80.2 Plus
Dgri\GH22866-PA 255 GH22866-PA 1..252 1..253 877 62.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:58:02
Subject Length Description Subject Range Query Range Score Percent Strand
betaTry-PB 253 CG18211-PB 1..253 1..253 1286 100 Plus
betaTry-PA 253 CG18211-PA 1..253 1..253 1286 100 Plus
CG30025-PA 253 CG30025-PA 1..253 1..253 1163 88.1 Plus
gammaTry-PA 253 CG30028-PA 1..253 1..253 1158 87.7 Plus
deltaTry-PA 253 CG12351-PA 1..253 1..253 1158 87.7 Plus
CG30031-PA 253 CG30031-PA 1..253 1..253 1158 87.7 Plus
alphaTry-PA 256 CG18444-PA 1..253 1..253 1150 86.2 Plus
epsilonTry-PA 256 CG18681-PA 1..253 1..253 864 62.8 Plus
Ser8-PA 260 CG4812-PA 9..254 8..250 733 59.3 Plus
CG17571-PB 258 CG17571-PB 4..253 1..251 596 48 Plus
CG17571-PA 258 CG17571-PA 4..253 1..251 596 48 Plus
thetaTry-PA 262 CG12385-PA 4..257 2..251 557 44.9 Plus
iotaTry-PA 252 CG7754-PA 26..249 29..253 537 44.2 Plus
CG17239-PB 248 CG17239-PB 3..238 2..250 513 45 Plus
CG17239-PA 248 CG17239-PA 3..238 2..250 513 45 Plus
Ser12-PA 245 CG17240-PA 2..240 1..251 491 44.4 Plus
zetaTry-PA 280 CG12387-PA 9..273 1..249 471 44.4 Plus
CG11192-PB 279 CG11192-PB 5..259 3..249 470 41.4 Plus
CG31954-PA 277 CG31954-PA 40..271 20..249 456 45.1 Plus
CG31681-PA 264 CG31681-PA 6..249 1..249 454 42.6 Plus
Try29F-PD 267 CG9564-PD 25..261 11..249 454 42.8 Plus
Try29F-PC 267 CG9564-PC 25..261 11..249 454 42.8 Plus
lambdaTry-PA 272 CG12350-PA 5..257 1..250 451 40.5 Plus
CG13430-PB 267 CG13430-PB 29..259 28..249 444 43.5 Plus
CG13430-PA 267 CG13430-PA 29..259 28..249 444 43.5 Plus
CG8299-PA 260 CG8299-PA 28..256 31..253 443 41.1 Plus
etaTry-PA 262 CG12386-PA 1..254 1..249 443 43.3 Plus
CG32269-PB 332 CG32269-PB 104..327 26..251 438 40.1 Plus
CG32269-PA 332 CG32269-PA 104..327 26..251 438 40.1 Plus
Send1-PA 255 CG17012-PA 8..241 7..251 430 43.1 Plus
CG32270-PA 259 CG32270-PA 18..254 18..252 430 41 Plus
Send2-PA 239 CG18125-PA 6..227 4..251 422 41.1 Plus
CG7829-PA 253 CG7829-PA 9..245 5..249 414 38.7 Plus
CG3650-PA 249 CG3650-PA 21..246 26..252 410 39 Plus
CG9676-PA 251 CG9676-PA 15..249 22..253 410 41.9 Plus
CG17234-PA 251 CG17234-PA 18..245 22..251 401 38.5 Plus
CG32271-PA 248 CG32271-PA 20..242 26..249 397 36.9 Plus
CG33159-PA 257 CG33159-PA 25..243 30..246 386 38.2 Plus
CG11836-PI 281 CG11836-PI 44..273 30..252 383 38.6 Plus
CG11836-PJ 333 CG11836-PJ 96..325 30..252 383 38.6 Plus
CG34458-PA 257 CG34458-PA 29..255 28..253 379 38.1 Plus
CG10405-PB 268 CG10405-PB 11..262 6..249 377 36.7 Plus
CG8172-PD 371 CG8172-PD 125..362 30..249 370 36.2 Plus
CG8172-PE 545 CG8172-PE 299..536 30..249 370 36.2 Plus
CG8172-PF 561 CG8172-PF 315..552 30..249 370 36.2 Plus
kappaTry-PC 263 CG12388-PC 9..253 14..249 369 36.9 Plus
CG1304-PA 260 CG1304-PA 13..257 4..253 357 34 Plus
CG32376-PA 291 CG32376-PA 65..284 30..249 355 36.7 Plus
CG32374-PA 299 CG32374-PA 70..292 27..249 355 36.2 Plus
CG16998-PA 258 CG16998-PA 3..244 7..251 354 33.7 Plus
CG32523-PA 262 CG32523-PA 10..260 5..253 346 37 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:21:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21244-PA 256 GI21244-PA 1..253 1..253 950 81.4 Plus
Dmoj\GI18413-PA 256 GI18413-PA 1..253 1..253 949 81.8 Plus
Dmoj\GI18414-PA 256 GI18414-PA 1..253 1..253 943 81 Plus
Dmoj\GI21243-PA 255 GI21243-PA 1..252 1..253 864 61.7 Plus
Dmoj\GI17438-PA 258 GI17438-PA 8..255 4..253 621 48.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:21:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17339-PA 256 GL17339-PA 1..253 1..253 1090 84.2 Plus
Dper\GL17142-PA 256 GL17142-PA 1..253 1..253 1075 87 Plus
Dper\GL17143-PA 256 GL17143-PA 1..253 1..253 1074 86.2 Plus
Dper\GL17338-PA 256 GL17338-PA 1..253 1..253 893 62.8 Plus
Dper\GL11685-PA 259 GL11685-PA 2..253 1..250 650 60.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:21:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14937-PA 256 GA14937-PA 1..253 1..253 1090 84.2 Plus
Dpse\GA24979-PA 256 GA24979-PA 1..253 1..253 1080 87.4 Plus
Dpse\GA24980-PA 256 GA24980-PA 1..253 1..253 1070 85.8 Plus
Dpse\GA15051-PA 256 GA15051-PA 1..253 1..253 907 63.2 Plus
Dpse\GA18449-PA 259 GA18449-PA 2..253 1..250 654 60.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:21:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20441-PA 256 GM20441-PA 1..253 1..253 1015 85 Plus
Dsec\GM21283-PA 266 GM21283-PA 1..263 1..253 713 54.7 Plus
Dsec\GM21468-PA 260 GM21468-PA 17..255 16..251 699 59.3 Plus
Dsec\GM20439-PA 378 GM20439-PA 1..133 1..133 615 85 Plus
Dsec\GM18246-PA 248 GM18246-PA 23..238 30..250 493 47.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:21:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15391-PA 253 GD15391-PA 1..253 1..253 1051 85.4 Plus
Dsim\GD10793-PA 253 GD10793-PA 1..253 1..253 1042 94.9 Plus
Dsim\GD25907-PA 485 GD25907-PA 232..482 3..253 948 83.3 Plus
Dsim\GD25907-PA 485 GD25907-PA 1..230 1..230 826 65.2 Plus
Dsim\GD15412-PA 260 GD15412-PA 17..255 16..251 706 59.8 Plus
Dsim\GD21711-PA 258 GD21711-PA 22..255 25..253 616 51.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:21:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Try1-PA 256 GJ21500-PA 1..253 1..253 999 82.6 Plus
Dvir\GJ21499-PA 256 GJ21499-PA 1..253 1..253 999 82.6 Plus
Dvir\GJ21498-PA 256 GJ21498-PA 1..253 1..253 980 77.1 Plus
Dvir\GJ21497-PA 309 GJ21497-PA 1..306 1..253 968 68 Plus
Dvir\GJ20849-PA 256 GJ20849-PA 1..253 1..253 951 82.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:21:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19675-PA 256 GK19675-PA 1..253 1..253 1059 85.8 Plus
Dwil\GK21995-PA 256 GK21995-PA 1..253 1..253 1047 81.4 Plus
Dwil\GK19454-PA 256 GK19454-PA 1..253 1..253 999 83.4 Plus
Dwil\GK19692-PA 256 GK19692-PA 1..253 1..253 998 83.8 Plus
Dwil\GK19693-PA 256 GK19693-PA 1..253 1..253 988 82.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:21:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12353-PA 253 GE12353-PA 1..253 1..253 1085 92.1 Plus
Dyak\GE13533-PA 256 GE13533-PA 1..253 1..253 1077 86.6 Plus
Dyak\GE12354-PA 256 GE12354-PA 1..253 1..253 1077 86.6 Plus
Dyak\alphaTry-PA 256 GE13535-PA 1..253 1..253 987 86.2 Plus
Dyak\epsilonTry-PA 256 GE13534-PA 1..253 1..253 895 63.6 Plus