Clone LP01749 Report

Search the DGRC for LP01749

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:17
Well:49
Vector:pOT2
Associated Gene/TranscriptLcp65Ag1-RA
Protein status:LP01749.pep: gold
Preliminary Size:878
Sequenced Size:752

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Lcp65Ag1 2008-04-29 Release 5.5 accounting
Lcp65Ag1 2008-08-15 Release 5.9 accounting
Lcp65Ag1 2008-12-18 5.12 accounting

Clone Sequence Records

LP01749.complete Sequence

752 bp (752 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061536

> LP01749.complete
CCCAGTTTAGAAACCTATATGTAATCCTTGAAATCATTCTGTGCGAAAAC
CTGAACGGTGAGCGTTAGTAGTAGGTTGTAGGGAGCTGCCCGTTGCACTT
CGTCCTCCTTAAGTTGATTTCTCAGATGGATGCAGGTTCGGGCGATGTAT
CGAAGGGTGCTGAACACGTGAGGTTCCAGTGGAAGGTGGAGGCAGACCAA
GGTGGCATACAGCCAGCGAGCCAGCCAGACATCGTGGGTTCGATAGCCGC
AGATCTAAGCACCAAACAACAATCACCATGAAATTCCTGATTGTCTTCGT
CGCCCTCTTCGCCGTGGCTCTGGCTGCTCCTGCCGCTGAGGAACCCACAA
TCGTGCGCTCTGAATCCGACGTTGGACCCGAAAGCTTCAAATACGACTGG
GAAACCTCCGATGGACAGGCTGCTCAAGCTGTAGGTCAGCTGAACGACAT
TGGAACTGAGAACGAGGCTATCTCTGTGAGTGGATCCTACCGCTTCATTG
CTGATGATGGCCAGACCTACCAAGTCAACTACATCGCCGATAAGAACGGA
TTCCAGCCCCAGGGTGCTCATCTGCCCGTTGCCCCCGTGGCATAAGTTTT
TCAACATTTTTAACTAGTTCCTTTTTAATGTCGGTTAACAGGAAATAGAA
AACCTTTATTACCGTTCTTATCAAGGAGAACAGAATCTAAATCAATAAGC
CTAAAGTGTTATTAAAGAAAAAATTTTTACATGAAAAAAAAAAAAAAAAA
AA

LP01749.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:11:18
Subject Length Description Subject Range Query Range Score Percent Strand
Lcp65Ag1-RA 783 Lcp65Ag1-RA 156..653 238..735 2475 99.7 Plus
Lcp65Ag3-RA 798 Lcp65Ag3-RA 77..436 238..597 1785 99.7 Plus
nc_10900.a 372 nc_10900.a 18..371 238..591 1770 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:14:08
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 6127252..6127588 733..397 1610 98.5 Minus
chr3L 24539361 chr3L 19089043..19089267 13..237 1125 100 Plus
chr3L 24539361 chr3L 6123107..6123307 597..397 990 99.5 Minus
chr3L 24539361 chr3L 6125709..6125909 597..397 990 99.5 Minus
chr3L 24539361 chr3L 6123369..6123527 396..238 795 100 Minus
chr3L 24539361 chr3L 6127650..6127808 396..238 795 100 Minus
chr3L 24539361 chr3L 6125971..6126129 396..238 735 97.5 Minus
chr3L 24539361 chr3L 6130276..6130377 583..482 405 93.1 Minus
chr3L 24539361 chr3L 6140109..6140202 598..505 335 90.4 Minus
chr3L 24539361 chr3L 6142980..6143073 598..505 335 90.4 Minus
chr3L 24539361 chr3L 6137743..6137838 482..577 285 86.5 Plus
chr3L 24539361 chr3L 6128928..6129015 590..503 245 85.2 Minus
chr3L 24539361 chr3L 6129242..6129294 319..267 205 92.5 Minus
chr3L 24539361 chr3L 6131974..6132045 577..506 180 83.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:46:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:14:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6134695..6135033 735..397 1680 99.7 Minus
3L 28110227 3L 19099479..19099703 13..237 1125 100 Plus
3L 28110227 3L 6130549..6130749 597..397 990 99.5 Minus
3L 28110227 3L 6133152..6133352 597..397 990 99.5 Minus
3L 28110227 3L 6130811..6130969 396..238 795 100 Minus
3L 28110227 3L 6135095..6135253 396..238 795 100 Minus
3L 28110227 3L 6133414..6133572 396..238 735 97.5 Minus
3L 28110227 3L 6137725..6137826 583..482 405 93.1 Minus
3L 28110227 3L 6147560..6147653 598..505 335 90.4 Minus
3L 28110227 3L 6150431..6150524 598..505 335 90.4 Minus
3L 28110227 3L 6145194..6145289 482..577 285 86.5 Plus
3L 28110227 3L 6136385..6136555 590..420 270 77.2 Minus
3L 28110227 3L 6136699..6136751 319..267 205 92.5 Minus
3L 28110227 3L 6139425..6139496 577..506 180 83.3 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:28:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 6127795..6128133 735..397 1680 99.7 Minus
3L 28103327 3L 19092579..19092803 13..237 1125 100 Plus
3L 28103327 3L 6126252..6126452 597..397 990 99.5 Minus
3L 28103327 3L 6123649..6123849 597..397 990 99.5 Minus
3L 28103327 3L 6128195..6128353 396..238 795 100 Minus
3L 28103327 3L 6123911..6124069 396..238 795 100 Minus
3L 28103327 3L 6126514..6126672 396..238 735 97.4 Minus
3L 28103327 3L 6130825..6130926 583..482 405 93.1 Minus
3L 28103327 3L 6143531..6143624 598..505 335 90.4 Minus
3L 28103327 3L 6140660..6140753 598..505 335 90.4 Minus
3L 28103327 3L 6138294..6138389 482..577 285 86.4 Plus
3L 28103327 3L 6129485..6129572 590..503 260 86.3 Minus
3L 28103327 3L 6129799..6129851 319..267 205 92.4 Minus
3L 28103327 3L 6142692..6142733 277..318 165 92.8 Plus
3L 28103327 3L 6139821..6139862 277..318 165 92.8 Plus
3L 28103327 3L 6142951..6143008 539..596 155 84.4 Plus
3L 28103327 3L 6140080..6140137 539..596 155 84.4 Plus
Blast to na_te.dros performed on 2019-03-15 16:14:07 has no hits.

LP01749.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:15:22 Download gff for LP01749.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 6127252..6127588 397..733 98 <- Minus
chr3L 6127650..6127808 238..396 100 == Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:33:20 Download gff for LP01749.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ag1-RA 1..318 278..595 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:38:34 Download gff for LP01749.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ag1-RA 1..318 278..595 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:56:26 Download gff for LP01749.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ag1-RA 1..318 278..595 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:19:02 Download gff for LP01749.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ag1-RA 1..318 278..595 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:30:00 Download gff for LP01749.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ag1-RA 1..318 278..595 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:34:43 Download gff for LP01749.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ag1-RA 18..513 238..733 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:38:33 Download gff for LP01749.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ag1-RA 18..513 238..733 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:56:26 Download gff for LP01749.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ag1-RA 22..517 238..733 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:19:02 Download gff for LP01749.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ag1-RA 18..513 238..733 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:30:00 Download gff for LP01749.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ag1-RA 22..517 238..733 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:15:22 Download gff for LP01749.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6134697..6135033 397..733 99 <- Minus
3L 6135095..6135253 238..396 100 == Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:15:22 Download gff for LP01749.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6134697..6135033 397..733 99 <- Minus
3L 6135095..6135253 238..396 100 == Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:15:22 Download gff for LP01749.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6134697..6135033 397..733 99 <- Minus
3L 6135095..6135253 238..396 100 == Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:56:26 Download gff for LP01749.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6127797..6128133 397..733 99 <- Minus
arm_3L 6128195..6128353 238..396 100 == Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:43:34 Download gff for LP01749.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6127797..6128133 397..733 99 <- Minus
3L 6128195..6128353 238..396 100 == Minus

LP01749.hyp Sequence

Translation from 238 to 594

> LP01749.hyp
FDSRRSKHQTTITMKFLIVFVALFAVALAAPAAEEPTIVRSESDVGPESF
KYDWETSDGQAAQAVGQLNDIGTENEAISVSGSYRFIADDGQTYQVNYIA
DKNGFQPQGAHLPVAPVA*

LP01749.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:26:51
Subject Length Description Subject Range Query Range Score Percent Strand
Lcp65Ag1-PA 105 CG10530-PA 1..105 14..118 535 100 Plus
Lcp65Ag2-PA 105 CG10534-PA 1..105 14..118 535 100 Plus
Lcp65Ag3-PA 105 CG18779-PA 1..105 14..118 532 99 Plus
Lcp65Af-PA 100 CG10533-PA 1..99 14..117 351 64.4 Plus
Lcp65Ae-PA 99 CG10529-PA 1..98 14..115 349 67.6 Plus

LP01749.pep Sequence

Translation from 277 to 594

> LP01749.pep
MKFLIVFVALFAVALAAPAAEEPTIVRSESDVGPESFKYDWETSDGQAAQ
AVGQLNDIGTENEAISVSGSYRFIADDGQTYQVNYIADKNGFQPQGAHLP
VAPVA*

LP01749.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:17:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10918-PA 105 GF10918-PA 1..105 1..105 379 75.2 Plus
Dana\GF10921-PA 101 GF10921-PA 1..101 1..105 368 67.6 Plus
Dana\GF10923-PA 105 GF10923-PA 1..105 1..105 361 79 Plus
Dana\GF23526-PA 115 GF23526-PA 11..115 1..105 336 67.6 Plus
Dana\GF10925-PA 107 GF10925-PA 1..101 1..104 333 72.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:17:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14083-PA 105 GG14083-PA 1..105 1..105 364 79 Plus
Dere\GG14086-PA 102 GG14086-PA 1..102 1..103 334 75.7 Plus
Dere\GG15327-PA 104 GG15327-PA 1..104 1..105 306 60.4 Plus
Dere\GG15325-PA 108 GG15325-PA 1..104 1..100 289 53.8 Plus
Dere\GG15326-PA 109 GG15326-PA 21..108 17..105 281 61.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:17:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15650-PA 101 GH15650-PA 1..97 1..100 345 68 Plus
Dgri\GH15651-PA 99 GH15651-PA 1..99 1..102 330 62.7 Plus
Dgri\GH15836-PA 110 GH15836-PA 1..104 1..100 311 59.6 Plus
Dgri\GH15846-PA 106 GH15846-PA 1..104 1..103 303 67.3 Plus
Dgri\GH15845-PA 106 GH15845-PA 1..104 1..103 303 67.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:36:21
Subject Length Description Subject Range Query Range Score Percent Strand
Lcp65Ag2-PA 105 CG10534-PA 1..105 1..105 535 100 Plus
Lcp65Ag1-PA 105 CG10530-PA 1..105 1..105 535 100 Plus
Lcp65Ag3-PA 105 CG18779-PA 1..105 1..105 532 99 Plus
Lcp65Af-PA 100 CG10533-PA 1..99 1..104 351 64.4 Plus
Lcp65Ae-PA 99 CG10529-PA 1..98 1..102 349 67.6 Plus
Lcp65Ac-PA 109 CG6956-PA 7..107 5..104 325 64.4 Plus
Cpr65Ax2-PB 102 CG18777-PB 1..102 1..105 309 60 Plus
Cpr65Ax2-PA 102 CG18777-PA 1..102 1..105 309 60 Plus
Cpr65Ax1-PA 102 CG34270-PA 1..102 1..105 309 60 Plus
Lcp65Ad-PB 108 CG6955-PB 1..104 1..100 287 53.8 Plus
Lcp65Ad-PA 108 CG6955-PA 1..104 1..100 287 53.8 Plus
Lcp65Ab1-PA 104 CG32400-PA 1..104 1..105 276 55.7 Plus
Lcp65Ab2-PA 104 CG18773-PA 1..104 1..105 276 55.7 Plus
Lcp65Aa-PA 102 CG7287-PA 1..100 1..100 238 44 Plus
Acp65Aa-PA 105 CG10297-PA 2..104 1..100 220 40.8 Plus
Cpr65Av-PA 111 CG32405-PA 15..109 9..100 220 46.3 Plus
Cpr49Af-PB 126 CG8510-PB 1..101 1..103 187 40.4 Plus
Cpr49Af-PA 126 CG8510-PA 1..101 1..103 187 40.4 Plus
Cpr49Aa-PB 144 CG30045-PB 1..112 1..103 179 36.3 Plus
Cpr65Az-PA 239 CG12330-PA 112..196 21..103 174 42.4 Plus
Cpr49Ab-PA 259 CG30042-PA 161..238 25..103 174 41.8 Plus
Cpr47Ea-PA 135 CG9079-PA 43..122 25..103 173 40 Plus
Cpr65Aw-PA 117 CG32404-PA 17..104 14..100 168 37.5 Plus
Cpr47Eb-PA 214 CG13224-PA 3..111 2..100 158 35.8 Plus
Cpr65Aw-PB 86 CG32404-PB 14..73 41..100 155 48.3 Plus
Cpr11B-PB 195 CG2555-PB 66..150 21..103 154 37.2 Plus
Cpr11B-PA 197 CG2555-PA 66..150 21..103 154 37.2 Plus
Cpr67Fa1-PA 134 CG7941-PA 3..100 2..103 153 35.8 Plus
Cpr78Cc-PA 119 CG7658-PA 6..99 4..103 151 36.5 Plus
Cpr67Fa2-PA 134 CG18349-PA 3..100 2..103 150 34.9 Plus
Cpr47Ef-PD 601 CG13214-PD 126..215 16..103 150 37.4 Plus
Cpr47Ef-PC 612 CG13214-PC 126..215 16..103 150 37.4 Plus
Lcp9-PA 92 CG16914-PA 1..88 1..95 142 37.9 Plus
Cpr47Ec-PA 131 CG9077-PA 10..103 4..97 141 37.2 Plus
Cpr65Ec-PA 127 CG8634-PA 3..99 2..103 134 36.2 Plus
Cpr49Ag-PA 134 CG8511-PA 31..133 16..103 134 34 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:17:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12628-PA 104 GI12628-PA 1..104 1..102 377 72.1 Plus
Dmoj\GI12627-PA 112 GI12627-PA 1..112 1..105 368 67 Plus
Dmoj\GI12618-PA 110 GI12618-PA 24..109 20..105 280 59.3 Plus
Dmoj\GI12696-PA 100 GI12696-PA 1..100 1..102 277 65.7 Plus
Dmoj\GI12620-PA 104 GI12620-PA 1..102 1..100 256 50 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:17:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15521-PA 102 GL15521-PA 1..101 1..102 355 67.6 Plus
Dper\GL15520-PA 104 GL15520-PA 1..104 1..105 315 72.4 Plus
Dper\GL15517-PA 104 GL15517-PA 1..104 1..105 315 72.4 Plus
Dper\GL15516-PA 102 GL15516-PA 1..101 1..102 294 68.6 Plus
Dper\GL15557-PA 109 GL15557-PA 28..108 25..105 279 63 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:17:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23852-PA 104 GA23852-PA 1..104 1..105 322 74.3 Plus
Dpse\GA23851-PA 104 GA23851-PA 1..104 1..105 318 73.3 Plus
Dpse\GA23853-PA 102 GA23853-PA 1..101 1..102 291 67.6 Plus
Dpse\GA23850-PA 102 GA23850-PA 1..101 1..102 291 67.6 Plus
Dpse\GA19982-PA 109 GA19982-PA 28..108 25..105 279 63 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:17:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13865-PA 101 GM13865-PA 1..101 1..105 364 67.6 Plus
Dsec\GM13866-PA 105 GM13866-PA 1..105 1..105 346 80 Plus
Dsec\GM13868-PA 105 GM13868-PA 1..105 1..105 346 80 Plus
Dsec\GM14761-PA 104 GM14761-PA 1..104 1..105 281 53.8 Plus
Dsec\GM19679-PA 104 GM19679-PA 1..104 1..105 281 53.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:17:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13153-PA 105 GD13153-PA 1..105 1..105 366 81 Plus
Dsim\GD14953-PA 101 GD14953-PA 1..101 1..105 361 67.6 Plus
Dsim\GD13150-PA 105 GD13150-PA 1..105 1..105 348 79 Plus
Dsim\GD13151-PA 105 GD13151-PA 1..105 1..105 348 79 Plus
Dsim\GD13149-PA 67 GD13149-PA 3..67 41..105 288 78.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:17:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12749-PA 105 GJ12749-PA 1..105 1..105 335 70.5 Plus
Dvir\GJ12680-PA 105 GJ12680-PA 1..105 1..105 332 73.3 Plus
Dvir\GJ12681-PA 105 GJ12681-PA 1..105 1..105 332 73.3 Plus
Dvir\GJ12752-PA 103 GJ12752-PA 1..103 1..105 331 73.3 Plus
Dvir\GJ12738-PA 110 GJ12738-PA 11..108 4..102 287 55.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:17:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16914-PA 104 GK16914-PA 1..102 1..103 404 73.8 Plus
Dwil\GK16916-PA 101 GK16916-PA 1..101 1..102 396 73.5 Plus
Dwil\GK16921-PA 105 GK16921-PA 1..103 1..103 372 67 Plus
Dwil\GK17269-PA 108 GK17269-PA 1..107 1..105 347 63.6 Plus
Dwil\GK16913-PA 102 GK16913-PA 1..102 1..102 328 58.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:17:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21545-PA 104 GE21545-PA 1..104 1..105 282 52.8 Plus
Dyak\GE21544-PA 118 GE21544-PA 15..118 1..105 280 52.8 Plus
Dyak\GE20504-PA 104 GE20504-PA 1..104 1..105 274 51.9 Plus
Dyak\GE20505-PA 118 GE20505-PA 15..118 1..105 274 51.9 Plus
Dyak\GE20503-PA 102 GE20503-PA 1..100 1..100 249 48.5 Plus