Clone LP01847 Report

Search the DGRC for LP01847

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:18
Well:47
Vector:pOT2
Associated Gene/TranscriptCG18745-RA
Protein status:LP01847.pep: gold
Preliminary Size:1468
Sequenced Size:1585

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18745 2002-01-01 Sim4 clustering to Release 2
CG18745 2002-05-18 Blastp of sequenced clone
CG18745 2003-01-01 Sim4 clustering to Release 3
CG18745 2008-04-29 Release 5.5 accounting
CG18745 2008-08-15 Release 5.9 accounting
CG18745 2008-12-18 5.12 accounting

Clone Sequence Records

LP01847.complete Sequence

1585 bp (1585 high quality bases) assembled on 2002-05-18

GenBank Submission: AY118978

> LP01847.complete
TGGGTGCTATCGTCGCGAAAAGCGGTTCCTTCCACTCTGTCTGGAGTTCT
CGGAATTTAGGGAGTAAATAACTGAACATTGGCATTAAAATCAAATCAGT
CGTGTTTGCAGCGGCATCAGAGTAGGATCGGCCCATAAATACACGATTGC
GGTTACAATTACAATTATGACTGTTACCTGTGAAATTGATTTCGATAACA
ATCCCCATGGCACCTACTTTGGGGGCGAGGTACTCACTGGCAGAGTTACG
TTGAAGCTGGACAAGATGAAGTTGGTAAAAGCCATCACCTTGAATATAAC
CGGATACGCAGAGACGCGTTGGATTGAAAGGGTGACCACAAACAGAAGGA
GGAGACGTCGCACATTCTGCGGCCGCGAGGATTACATAGCGTCCAAAACA
TTTTTGGTGGGATCCAATCTGAGCAGCCAAGTATCCATTGAAGCGGGAAT
TCACACTTACAACTTCGTGTGCCTGATTCCCACCGAATGTCCTTCGTCCT
TCGAGGGATCACACGGCAGGGTGCGGTACATGGCAACCGTAACCCTCGTC
AGGCCCTGGAAATTCGATCAGAGCTATACCCGATGCTTTACGGTGCTAAA
AGTGATGGACTTGAACTTCGATAGTCCACTGCTAAGGGTACCCGCCCACA
GTGAAACCTCGAAGACCTACTGCTGCTGGCCTTGCCGATCAGATCCGTTG
GCCCTCCAACTGACCGTTCCACAGACAGGATTTGTACCTGGCCAGAATGT
TCCCCTTAGCGTGCTGGTCACAAACGATAGCCACATTCCGGTGGAGCAGC
TCCTCATTAGTTTTGTGATGCTGGTGACATACCACAGTAAGCCACCTTCG
ATGCCCAATACCACGTCCGAGAGGTTGGTGGTAAACACCTTCAAGGGGGA
CGCTGTGCAAAGGAACTGCAAGAAGCTATTTAGCTATGAGATCAGAGTCC
CGGCCACTCCGCCCACCTGCTTCAACCTGTGCGGCATCATCCAGATCGCC
TACCAAGTGGAGGTGGAGGCCAGGGTGAAGGGTTGCCACAACAACGAGGT
TGTCACCATTCCGCTGACCATTGGCAGTGTCCCTCTTGCACAACACGTAC
CAATCCAGCCTCGGGGTTTCGTCCCCCAGCTGAATGTTAATGAGCTGGCT
GTTGAAGAAGTAGCCACTGCTCCAAACTCTTCAAGTCCATGGTCTGTCGA
CGCATCCATTCCTCCGCCCAACTATCAGGAGGCTGTTCACATGCGCAGCA
CGGCTGCAACGAGGTCAGACGACTTAGACGACCCGGAACCAGTACCGCCC
AATACTCTCAGTTTGGATGGCGGTGCTTATAAGCCACTCTATCCGGTCTT
CGACATACCCAGTCCCTCAGCTCCGCCGCCGACGGATTATACGCAGAATT
ATATGGCAGAGAGGGCCTTTGTCAATCCGGCCATGGATGTGGACAAAGAC
AAGGGAACGTGGCTATGAGAACGAAAATAAATACTATACTAGAAATGTAA
GGGCGATAAAGCATTTGCACACAAGGCAAAAGTTCCACCTAACACTTTAT
AATAAACATTTTATCACAAAAAAAAAAAAAAAAAA

LP01847.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:02:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG18745-RA 1597 CG18745-RA 15..1583 1..1569 7845 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:01:33
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 3610324..3610898 1211..637 2875 100 Minus
chr3R 27901430 chr3R 3609903..3610258 1567..1212 1780 100 Minus
chr3R 27901430 chr3R 3611899..3612179 281..1 1405 100 Minus
chr3R 27901430 chr3R 3610961..3611176 641..426 1080 100 Minus
chr3R 27901430 chr3R 3611233..3611379 426..280 735 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:46:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:01:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7784264..7784838 1211..637 2875 100 Minus
3R 32079331 3R 7783841..7784198 1569..1212 1790 100 Minus
3R 32079331 3R 7785839..7786119 281..1 1405 100 Minus
3R 32079331 3R 7784901..7785116 641..426 1080 100 Minus
3R 32079331 3R 7785173..7785319 426..280 735 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 7525095..7525669 1211..637 2875 100 Minus
3R 31820162 3R 7524672..7525029 1569..1212 1790 100 Minus
3R 31820162 3R 7526670..7526950 281..1 1405 100 Minus
3R 31820162 3R 7525732..7525947 641..426 1080 100 Minus
3R 31820162 3R 7526004..7526150 426..280 735 100 Minus
3R 31820162 3R 7530287..7530370 640..557 165 79.7 Minus
3R 31820162 3R 7522605..7522638 1020..987 140 94.1 Minus
Blast to na_te.dros performed on 2019-03-16 02:01:32 has no hits.

LP01847.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:02:15 Download gff for LP01847.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 3611899..3612179 1..281 100   Minus
chr3R 3609903..3610258 1212..1567 100 <- Minus
chr3R 3610324..3610897 638..1211 100 <- Minus
chr3R 3610965..3611176 426..637 100 <- Minus
chr3R 3611234..3611377 282..425 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:33:25 Download gff for LP01847.complete
Subject Subject Range Query Range Percent Splice Strand
CG18745-RA 1..1302 167..1468 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:43:47 Download gff for LP01847.complete
Subject Subject Range Query Range Percent Splice Strand
CG18745-RA 1..1302 167..1468 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:10:54 Download gff for LP01847.complete
Subject Subject Range Query Range Percent Splice Strand
CG18745-RA 1..1302 167..1468 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:35:56 Download gff for LP01847.complete
Subject Subject Range Query Range Percent Splice Strand
CG18745-RA 1..1302 167..1468 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:55:41 Download gff for LP01847.complete
Subject Subject Range Query Range Percent Splice Strand
CG18745-RA 1..1302 167..1468 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:18:27 Download gff for LP01847.complete
Subject Subject Range Query Range Percent Splice Strand
CG18745-RA 1..1567 1..1567 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:43:47 Download gff for LP01847.complete
Subject Subject Range Query Range Percent Splice Strand
CG18745-RA 1..1567 1..1567 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:10:54 Download gff for LP01847.complete
Subject Subject Range Query Range Percent Splice Strand
CG18745-RA 1..1567 1..1567 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:35:56 Download gff for LP01847.complete
Subject Subject Range Query Range Percent Splice Strand
CG18745-RA 1..1567 1..1567 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:55:41 Download gff for LP01847.complete
Subject Subject Range Query Range Percent Splice Strand
CG18745-RA 1..1567 1..1567 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:02:15 Download gff for LP01847.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7783843..7784198 1212..1567 100 <- Minus
3R 7784264..7784837 638..1211 100 <- Minus
3R 7784905..7785116 426..637 100 <- Minus
3R 7785174..7785317 282..425 100 <- Minus
3R 7785839..7786119 1..281 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:02:15 Download gff for LP01847.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7783843..7784198 1212..1567 100 <- Minus
3R 7784264..7784837 638..1211 100 <- Minus
3R 7784905..7785116 426..637 100 <- Minus
3R 7785174..7785317 282..425 100 <- Minus
3R 7785839..7786119 1..281 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:02:15 Download gff for LP01847.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7783843..7784198 1212..1567 100 <- Minus
3R 7784264..7784837 638..1211 100 <- Minus
3R 7784905..7785116 426..637 100 <- Minus
3R 7785174..7785317 282..425 100 <- Minus
3R 7785839..7786119 1..281 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:10:54 Download gff for LP01847.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3609565..3609920 1212..1567 100 <- Minus
arm_3R 3609986..3610559 638..1211 100 <- Minus
arm_3R 3610627..3610838 426..637 100 <- Minus
arm_3R 3610896..3611039 282..425 100 <- Minus
arm_3R 3611561..3611841 1..281 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:08:20 Download gff for LP01847.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7524674..7525029 1212..1567 100 <- Minus
3R 7525095..7525668 638..1211 100 <- Minus
3R 7525736..7525947 426..637 100 <- Minus
3R 7526005..7526148 282..425 100 <- Minus
3R 7526670..7526950 1..281 100   Minus

LP01847.hyp Sequence

Translation from 166 to 1467

> LP01847.hyp
MTVTCEIDFDNNPHGTYFGGEVLTGRVTLKLDKMKLVKAITLNITGYAET
RWIERVTTNRRRRRRTFCGREDYIASKTFLVGSNLSSQVSIEAGIHTYNF
VCLIPTECPSSFEGSHGRVRYMATVTLVRPWKFDQSYTRCFTVLKVMDLN
FDSPLLRVPAHSETSKTYCCWPCRSDPLALQLTVPQTGFVPGQNVPLSVL
VTNDSHIPVEQLLISFVMLVTYHSKPPSMPNTTSERLVVNTFKGDAVQRN
CKKLFSYEIRVPATPPTCFNLCGIIQIAYQVEVEARVKGCHNNEVVTIPL
TIGSVPLAQHVPIQPRGFVPQLNVNELAVEEVATAPNSSSPWSVDASIPP
PNYQEAVHMRSTAATRSDDLDDPEPVPPNTLSLDGGAYKPLYPVFDIPSP
SAPPPTDYTQNYMAERAFVNPAMDVDKDKGTWL*

LP01847.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:36:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG18745-PA 433 CG18745-PA 1..433 1..433 2310 100 Plus
CG18746-PA 438 CG18746-PA 2..438 3..433 940 42.4 Plus
CG18748-PC 409 CG18748-PC 1..390 1..397 880 42.4 Plus
CG18747-PB 418 CG18747-PB 1..399 1..401 879 41.9 Plus
CG18748-PB 359 CG18748-PB 1..340 1..397 720 37.3 Plus

LP01847.pep Sequence

Translation from 166 to 1467

> LP01847.pep
MTVTCEIDFDNNPHGTYFGGEVLTGRVTLKLDKMKLVKAITLNITGYAET
RWIERVTTNRRRRRRTFCGREDYIASKTFLVGSNLSSQVSIEAGIHTYNF
VCLIPTECPSSFEGSHGRVRYMATVTLVRPWKFDQSYTRCFTVLKVMDLN
FDSPLLRVPAHSETSKTYCCWPCRSDPLALQLTVPQTGFVPGQNVPLSVL
VTNDSHIPVEQLLISFVMLVTYHSKPPSMPNTTSERLVVNTFKGDAVQRN
CKKLFSYEIRVPATPPTCFNLCGIIQIAYQVEVEARVKGCHNNEVVTIPL
TIGSVPLAQHVPIQPRGFVPQLNVNELAVEEVATAPNSSSPWSVDASIPP
PNYQEAVHMRSTAATRSDDLDDPEPVPPNTLSLDGGAYKPLYPVFDIPSP
SAPPPTDYTQNYMAERAFVNPAMDVDKDKGTWL*

LP01847.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:09:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17285-PA 436 GF17285-PA 1..436 1..433 1888 81.2 Plus
Dana\GF17283-PA 439 GF17283-PA 2..439 3..433 965 43.6 Plus
Dana\GF17284-PA 415 GF17284-PA 1..396 1..398 877 43.7 Plus
Dana\GF17286-PA 440 GF17286-PA 1..421 1..401 841 40.2 Plus
Dana\GF17683-PA 477 GF17683-PA 1..437 1..405 673 34.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:09:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24984-PA 435 GG24984-PA 1..435 1..433 2114 92.9 Plus
Dere\GG24962-PA 438 GG24962-PA 2..438 3..433 943 42.7 Plus
Dere\GG24973-PA 403 GG24973-PA 1..388 1..401 902 42.6 Plus
Dere\GG24995-PA 416 GG24995-PA 24..398 21..402 764 40.6 Plus
Dere\GG14185-PA 469 GG14185-PA 1..434 1..405 667 33.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:09:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19257-PA 430 GH19257-PA 1..430 1..433 1301 55.4 Plus
Dgri\GH19256-PA 433 GH19256-PA 1..433 1..433 985 46.1 Plus
Dgri\GH19258-PA 404 GH19258-PA 1..303 1..308 839 47.9 Plus
Dgri\GH18318-PA 461 GH18318-PA 1..414 1..397 647 35 Plus
Dgri\GH17389-PA 407 GH17389-PA 6..403 5..403 581 34.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:14:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG18745-PA 433 CG18745-PA 1..433 1..433 2310 100 Plus
CG18746-PA 438 CG18746-PA 2..438 3..433 940 42.4 Plus
CG18748-PC 409 CG18748-PC 1..390 1..397 880 42.4 Plus
CG18747-PB 418 CG18747-PB 1..399 1..401 879 41.9 Plus
CG18748-PB 359 CG18748-PB 1..340 1..397 720 37.3 Plus
CG10086-PA 469 CG10086-PA 1..434 1..405 659 33.9 Plus
CG1105-PA 422 CG1105-PA 6..419 5..404 610 34.5 Plus
CG2641-PA 429 CG2641-PA 1..394 1..411 437 27.5 Plus
CG2993-PA 511 CG2993-PA 1..305 1..307 409 29.8 Plus
CG2993-PB 524 CG2993-PB 1..305 1..307 409 29.8 Plus
CG2993-PC 545 CG2993-PC 1..305 1..307 409 29.8 Plus
CG3014-PC 488 CG3014-PC 1..300 1..311 377 29.6 Plus
CG3014-PA 488 CG3014-PA 1..300 1..311 377 29.6 Plus
Leash-PA 520 CG4674-PA 17..305 17..304 334 29.6 Plus
CG14696-PA 457 CG14696-PA 9..412 9..421 317 25.5 Plus
CG18744-PB 410 CG18744-PB 1..379 1..368 301 27.3 Plus
Vdup1-PE 342 CG7047-PE 10..298 7..306 240 23.9 Plus
Vdup1-PD 342 CG7047-PD 10..298 7..306 240 23.9 Plus
Vdup1-PA 342 CG7047-PA 10..298 7..306 240 23.9 Plus
Vdup1-PC 342 CG7047-PC 10..298 7..306 240 23.9 Plus
Vdup1-PB 342 CG7047-PB 10..298 7..306 240 23.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:09:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23467-PA 430 GI23467-PA 1..430 1..433 1337 57.3 Plus
Dmoj\GI23466-PA 427 GI23466-PA 1..416 1..402 1004 49.2 Plus
Dmoj\GI23468-PA 405 GI23468-PA 1..387 1..400 858 42.3 Plus
Dmoj\GI24129-PA 464 GI24129-PA 1..414 1..397 668 36 Plus
Dmoj\GI23546-PA 409 GI23546-PA 6..405 5..403 576 33.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:09:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12155-PA 435 GL12155-PA 1..435 1..433 1825 80 Plus
Dper\GL12153-PA 403 GL12153-PA 2..370 3..363 990 50 Plus
Dper\GL12154-PA 435 GL12154-PA 1..434 1..429 866 40.5 Plus
Dper\GL22035-PA 420 GL22035-PA 6..417 5..404 590 33.8 Plus
Dper\GL12157-PA 148 GL12157-PA 1..148 1..151 408 48.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:09:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15063-PA 435 GA15063-PA 1..435 1..433 1822 79.7 Plus
Dpse\GA15064-PA 431 GA15064-PA 2..431 3..433 1029 46.1 Plus
Dpse\GA26206-PC 435 GA26206-PC 1..422 1..416 867 41.2 Plus
Dpse\GA15065-PA 407 GA15065-PA 1..406 1..424 820 42.3 Plus
Dpse\GA26206-PB 385 GA26206-PB 1..358 1..401 697 37.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:09:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10459-PA 435 GM10459-PA 1..435 1..433 2241 95.6 Plus
Dsec\GM10457-PA 438 GM10457-PA 2..438 3..433 945 42.1 Plus
Dsec\GM10458-PA 406 GM10458-PA 1..387 1..397 876 41.8 Plus
Dsec\GM10460-PA 417 GM10460-PA 26..412 22..420 809 40.4 Plus
Dsec\GM10973-PA 469 GM10973-PA 1..434 1..405 681 34.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:09:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19463-PA 435 GD19463-PA 1..435 1..433 2246 96.1 Plus
Dsim\GD19461-PA 438 GD19461-PA 2..438 3..433 946 42.2 Plus
Dsim\GD19464-PA 417 GD19464-PA 26..412 22..420 775 40.1 Plus
Dsim\GD19462-PA 320 GD19462-PA 1..301 89..397 680 42.4 Plus
Dsim\GD19947-PA 469 GD19947-PA 1..434 1..405 675 34.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:09:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10222-PA 426 GJ10222-PA 1..426 1..433 1313 58.7 Plus
Dvir\GJ10221-PA 431 GJ10221-PA 1..431 1..433 1048 49.6 Plus
Dvir\GJ10223-PA 406 GJ10223-PA 1..387 1..401 858 42.3 Plus
Dvir\GJ10952-PA 464 GJ10952-PA 1..422 1..405 686 36.7 Plus
Dvir\GJ24027-PA 410 GJ24027-PA 6..406 5..403 559 33.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:09:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11060-PA 431 GK11060-PA 1..431 1..433 1645 69.9 Plus
Dwil\GK11059-PA 430 GK11059-PA 1..430 1..433 1026 48.1 Plus
Dwil\GK11061-PA 412 GK11061-PA 1..393 1..400 892 44 Plus
Dwil\GK12019-PA 469 GK12019-PA 1..427 1..405 660 34.2 Plus
Dwil\GK10823-PA 425 GK10823-PA 6..421 5..403 579 34.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:09:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25773-PA 435 GE25773-PA 1..435 1..433 2149 94 Plus
Dyak\GE25771-PA 438 GE25771-PA 2..438 3..433 915 42.2 Plus
Dyak\GE25774-PA 413 GE25774-PA 1..411 1..423 884 42.5 Plus
Dyak\GE11153-PA 388 GE11153-PA 1..369 22..397 835 42.9 Plus
Dyak\GE25772-PA 388 GE25772-PA 1..369 22..397 835 42.9 Plus