Clone LP01850 Report

Search the DGRC for LP01850

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:18
Well:50
Vector:pOT2
Associated Gene/TranscriptCG7142-RA
Protein status:LP01850.pep: gold
Preliminary Size:1250
Sequenced Size:1360

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7142 2002-01-01 Sim4 clustering to Release 2
CG7142 2002-05-18 Blastp of sequenced clone
CG7142 2003-01-01 Sim4 clustering to Release 3
CG7142 2008-04-29 Release 5.5 accounting
CG7142 2008-08-15 Release 5.9 accounting
CG7142 2008-12-18 5.12 accounting

Clone Sequence Records

LP01850.complete Sequence

1360 bp (1360 high quality bases) assembled on 2002-05-18

GenBank Submission: AY118979

> LP01850.complete
CTGAACAATACGAACACGGCAAAATCGGGCCGAATAAAGTGAATTCCATG
CCAAAGCGAAACGGAATACAAGTGAAGTGCTATCGATACGCCAGAACAAG
GGCGAAAAGCTAAAGTAGTCGCGACATCGAATCCCCAAACGAGTCGCGCC
TCCACAACCAAGAACCCCAAAACCGTCAAAATTACCTTCTACTATTCGAC
AAATTCGTGCGGCGCGTGCAACCAGAGCGAGGACATCATGCTCTTATCCT
ACCGATGCATCTACTCGGTGCTGCTGTCCACCATAGCCAGTATTATGGTG
GTACTAAGCTCTGCATCCTCCGGCTCCATACAGCTGCCCACTGTGCGCAA
GTGCGGCGGTGGCAGATCTGCGGGAGCAGCCCACACAATGGCCATGAATT
TGGCGGCCTACGGGCTGCTGGAGAATCGGATTAGCACTCTGGAAGCACCG
CGACAAACGCACTGGACGAAAAAGTTCCTGGCCAAGCGGGAGGCGACTCC
CCATTCGGCGCCGTATGTGGTCAGCATCCAGATGATGACACCCGATCAGG
GACTGGTCCACTACTGTGCCGGCACCATCATCAACGAGCACTGGATCCTG
ACGGCGGCCCACTGCCTCAGCTCACCGCAGGCGGTGGAGAACTCGGTCAT
TGTGGCGGGCAGCCACGATATTCACGATCAGAAGGGCGAGGCGAGCAACA
TTCAAATGCGACACATCGACTACTACGTGCGACACGAGCTCTATCTCGGC
GGAGTGAATCCCTACGACATCGCGCTAATTTACACCAAGGAGCCCCTGGT
CTTTGACACCTATGTCCAGCCAGCAACGCTGCCGGAGCAGGATGCCCAGC
CGGAGGGATATGGAACTTTGTACGGCTGGGGCAATGTCTCGATGACTGCG
GTACCCAATTATCCGCACCGCCTGCAGGAGGCCAACATGCCCATACTGGA
CATGGAGTTATGCGAACAGATTCTCGCCCGCTCCGGACTCCCATTGCACG
AGACCAATCTGTGCACTGGCCCGCTGACAGGAGGCGTTAGCATCTGCACC
GCCGACTCCGGCGGACCATTGATTCAGCAGTGCTGCGAGGAGCACTTCGA
GCAGGCCAACATTGTCATCGGCATTGTGTCCTGGGGCAAGATGCCATGCG
GCCAGAAGAACGCGCCCTCGGTCTTTGTTCGCGTCTCCGCCTTCACGGAG
TGGATCAACCAGGTCATCAGCACGGCCACCCACATTATGTAAGATCATGT
AATAATGATCATCGGAAAGATACTATACAACTTAGGCAGATTCGCCCACA
AATTAGCGCTCGAATGTGAAGATATCGAAAAACGAAATATACAAAAAAAA
AAAAAAAAAA

LP01850.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:02:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG7142-RA 1368 CG7142-RA 9..1359 1..1351 6755 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:15:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 14102475..14103816 1342..1 6710 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:46:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:15:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18278172..18279522 1351..1 6755 100 Minus
2L 23513712 2L 12110254..12110320 1002..1068 185 85.1 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 18019003..18020353 1351..1 6755 100 Minus
Blast to na_te.dros performed on 2019-03-16 12:15:53 has no hits.

LP01850.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:16:59 Download gff for LP01850.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 14102475..14103816 1..1342 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:33:26 Download gff for LP01850.complete
Subject Subject Range Query Range Percent Splice Strand
CG7142-RA 1..1005 238..1242 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:43:48 Download gff for LP01850.complete
Subject Subject Range Query Range Percent Splice Strand
CG7142-RA 1..1005 238..1242 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:03:58 Download gff for LP01850.complete
Subject Subject Range Query Range Percent Splice Strand
CG7142-RA 1..1005 238..1242 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:35:57 Download gff for LP01850.complete
Subject Subject Range Query Range Percent Splice Strand
CG7142-RA 1..1005 238..1242 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:40:41 Download gff for LP01850.complete
Subject Subject Range Query Range Percent Splice Strand
CG7142-RA 1..1005 238..1242 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:18:29 Download gff for LP01850.complete
Subject Subject Range Query Range Percent Splice Strand
CG7142-RA 9..1350 1..1342 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:43:48 Download gff for LP01850.complete
Subject Subject Range Query Range Percent Splice Strand
CG7142-RA 9..1350 1..1342 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:03:58 Download gff for LP01850.complete
Subject Subject Range Query Range Percent Splice Strand
CG7142-RA 9..1350 1..1342 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:35:57 Download gff for LP01850.complete
Subject Subject Range Query Range Percent Splice Strand
CG7142-RA 9..1350 1..1342 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:40:41 Download gff for LP01850.complete
Subject Subject Range Query Range Percent Splice Strand
CG7142-RA 1..1342 1..1342 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:16:59 Download gff for LP01850.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18278181..18279522 1..1342 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:16:59 Download gff for LP01850.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18278181..18279522 1..1342 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:16:59 Download gff for LP01850.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18278181..18279522 1..1342 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:03:58 Download gff for LP01850.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14103903..14105244 1..1342 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:08:22 Download gff for LP01850.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18019012..18020353 1..1342 100   Minus

LP01850.pep Sequence

Translation from 237 to 1241

> LP01850.pep
MLLSYRCIYSVLLSTIASIMVVLSSASSGSIQLPTVRKCGGGRSAGAAHT
MAMNLAAYGLLENRISTLEAPRQTHWTKKFLAKREATPHSAPYVVSIQMM
TPDQGLVHYCAGTIINEHWILTAAHCLSSPQAVENSVIVAGSHDIHDQKG
EASNIQMRHIDYYVRHELYLGGVNPYDIALIYTKEPLVFDTYVQPATLPE
QDAQPEGYGTLYGWGNVSMTAVPNYPHRLQEANMPILDMELCEQILARSG
LPLHETNLCTGPLTGGVSICTADSGGPLIQQCCEEHFEQANIVIGIVSWG
KMPCGQKNAPSVFVRVSAFTEWINQVISTATHIM*

LP01850.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:09:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23147-PA 335 GF23147-PA 1..335 1..334 1653 91.9 Plus
Dana\GF21569-PA 268 GF21569-PA 33..267 79..327 598 48 Plus
Dana\GF21567-PA 275 GF21567-PA 61..273 105..326 558 51.1 Plus
Dana\GF24871-PA 277 GF24871-PA 42..271 85..328 424 38.9 Plus
Dana\GF24882-PA 267 GF24882-PA 41..260 91..325 354 37.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:09:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16564-PA 334 GG16564-PA 1..334 1..334 1762 98.2 Plus
Dere\GG23769-PA 270 GG23769-PA 35..264 79..324 619 49.4 Plus
Dere\GG24657-PA 277 GG24657-PA 42..271 85..328 460 41.4 Plus
Dere\GG24658-PA 273 GG24658-PA 9..268 57..325 355 36.1 Plus
Dere\GG23770-PA 200 GG23770-PA 38..184 79..233 327 41.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:09:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22284-PA 327 GH22284-PA 1..327 1..334 1513 83.8 Plus
Dgri\GH11580-PA 273 GH11580-PA 29..267 69..323 603 46.5 Plus
Dgri\GH11150-PA 277 GH11150-PA 1..271 53..328 482 37.8 Plus
Dgri\GH22535-PA 277 GH22535-PA 1..269 53..326 478 37.4 Plus
Dgri\GH11151-PA 277 GH11151-PA 1..269 53..326 478 37.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:22:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG7142-PA 334 CG7142-PA 1..334 1..334 1768 100 Plus
Phae1-PB 270 CG16996-PB 42..270 86..328 607 50.4 Plus
Phae1-PA 270 CG16996-PA 42..270 86..328 607 50.4 Plus
Phae2-PC 265 CG16997-PC 36..259 84..323 597 49.4 Plus
Phae2-PB 265 CG16997-PB 36..259 84..323 597 49.4 Plus
CG11911-PA 277 CG11911-PA 42..271 85..328 467 41.6 Plus
CG11912-PA 271 CG11912-PA 15..266 65..325 351 36.4 Plus
Sb-PB 787 CG4316-PB 573..782 108..323 300 35.2 Plus
Sb-PA 787 CG4316-PA 573..782 108..323 300 35.2 Plus
teq-PD 1450 CG4821-PD 1155..1444 41..328 292 29.4 Plus
teq-PF 2379 CG4821-PF 2084..2373 41..328 292 29.4 Plus
teq-PG 2792 CG4821-PG 2497..2786 41..328 292 29.4 Plus
Np-PB 1041 CG34350-PB 810..1039 92..327 288 28.7 Plus
Np-PA 1041 CG34350-PA 810..1039 92..327 288 28.7 Plus
CG6865-PB 285 CG6865-PB 34..281 79..327 282 31.3 Plus
CG7829-PA 253 CG7829-PA 40..250 92..328 272 32.5 Plus
CG10472-PA 290 CG10472-PA 53..281 86..325 271 32 Plus
etaTry-PA 262 CG12386-PA 33..254 85..323 270 31 Plus
CG33127-PA 284 CG33127-PA 52..277 90..327 260 28 Plus
CG32808-PA 284 CG32808-PA 36..261 86..329 259 28.9 Plus
CG8172-PD 371 CG8172-PD 155..367 110..328 258 29.2 Plus
CG8172-PE 545 CG8172-PE 329..541 110..328 258 29.2 Plus
CG8172-PF 561 CG8172-PF 345..557 110..328 258 29.2 Plus
CG4998-PA 891 CG4998-PA 655..886 92..326 258 30.6 Plus
CG4998-PB 1185 CG4998-PB 949..1180 92..326 258 30.6 Plus
lambdaTry-PA 272 CG12350-PA 59..261 108..328 252 30.3 Plus
CG31954-PA 277 CG31954-PA 62..273 91..325 250 30.8 Plus
CG11836-PF 223 CG11836-PF 11..212 109..323 247 30.6 Plus
CG11836-PE 223 CG11836-PE 11..212 109..323 247 30.6 Plus
CG11836-PG 223 CG11836-PG 11..212 109..323 247 30.6 Plus
CG11836-PC 223 CG11836-PC 11..212 109..323 247 30.6 Plus
CG11836-PA 223 CG11836-PA 11..212 109..323 247 30.6 Plus
CG11836-PB 223 CG11836-PB 11..212 109..323 247 30.6 Plus
CG11836-PI 281 CG11836-PI 69..270 109..323 247 30.6 Plus
CG11836-PJ 333 CG11836-PJ 121..322 109..323 247 30.6 Plus
CG8299-PA 260 CG8299-PA 10..254 55..325 245 28.4 Plus
CG32376-PA 291 CG32376-PA 78..288 102..327 245 30.5 Plus
CG4386-PA 372 CG4386-PA 125..361 78..330 242 28.5 Plus
CG32755-PA 315 CG32755-PA 37..273 79..325 240 31 Plus
MP1-PA 390 CG1102-PA 133..384 85..323 239 27.7 Plus
MP1-PC 399 CG1102-PC 142..393 85..323 239 27.7 Plus
MP1-PE 400 CG1102-PE 143..394 85..323 239 27.7 Plus
CG16749-PA 265 CG16749-PA 42..259 92..325 236 31.3 Plus
CG5255-PA 273 CG5255-PA 29..254 79..328 236 30.4 Plus
CG12256-PA 283 CG12256-PA 60..280 92..325 235 31.2 Plus
CG11843-PB 316 CG11843-PB 64..315 76..329 234 27.3 Plus
CG11843-PA 316 CG11843-PA 64..315 76..329 234 27.3 Plus
CG9372-PA 408 CG9372-PA 178..402 84..323 234 28.4 Plus
CG31219-PB 345 CG31219-PB 72..343 63..327 233 26.4 Plus
CG4914-PA 374 CG4914-PA 152..360 109..323 232 30.6 Plus
CG12951-PA 265 CG12951-PA 42..264 92..328 227 32 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:09:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23092-PA 326 GI23092-PA 1..326 1..334 1469 81.1 Plus
Dmoj\GI17150-PA 251 GI17150-PA 29..245 89..324 604 50.6 Plus
Dmoj\GI17855-PA 278 GI17855-PA 42..270 85..326 433 39.1 Plus
Dmoj\GI17857-PA 267 GI17857-PA 29..265 79..328 348 33.2 Plus
Dmoj\GI17856-PA 265 GI17856-PA 29..263 79..328 333 33.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:09:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22122-PA 336 GL22122-PA 1..336 1..334 1587 89.6 Plus
Dper\GL19241-PA 266 GL19241-PA 54..263 108..326 587 51.4 Plus
Dper\GL19275-PA 277 GL19275-PA 1..267 53..324 451 38.7 Plus
Dper\GL19276-PA 271 GL19276-PA 29..264 79..325 292 30.5 Plus
Dper\GL12221-PA 628 GL12221-PA 413..623 107..323 291 34.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:09:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20132-PA 336 GA20132-PA 1..336 1..334 1604 89.9 Plus
Dpse\GA14265-PA 266 GA14265-PA 54..263 108..326 587 51.4 Plus
Dpse\GA11277-PA 277 GA11277-PA 1..267 53..324 452 38.7 Plus
Dpse\GA18102-PB 746 GA18102-PB 531..741 107..323 292 34.1 Plus
Dpse\GA25897-PA 271 GA25897-PA 29..264 79..325 291 30.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:09:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15310-PA 334 GM15310-PA 1..334 1..334 1769 98.8 Plus
Dsec\GM26739-PA 273 GM26739-PA 39..273 79..327 603 48.4 Plus
Dsec\GM26738-PA 263 GM26738-PA 35..257 79..324 590 48.6 Plus
Dsec\GM21910-PA 217 GM21910-PA 4..217 105..327 573 50.4 Plus
Dsec\GM16677-PA 277 GM16677-PA 42..271 85..328 441 39.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:09:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20188-PA 334 GD20188-PA 1..334 1..334 1769 98.8 Plus
Dsim\GD23820-PA 273 GD23820-PA 39..273 79..327 613 48.8 Plus
Dsim\GD23819-PA 270 GD23819-PA 35..264 79..324 612 48.6 Plus
Dsim\GD22965-PA 277 GD22965-PA 42..271 85..328 461 40.8 Plus
Dsim\GD22966-PA 271 GD22966-PA 8..266 58..325 375 36.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:09:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22712-PA 326 GJ22712-PA 1..326 1..334 1500 82.6 Plus
Dvir\GJ17654-PA 277 GJ17654-PA 42..271 79..324 605 47.4 Plus
Dvir\GJ17353-PA 277 GJ17353-PA 5..271 48..328 481 38.8 Plus
Dvir\GJ17354-PA 277 GJ17354-PA 42..271 85..328 453 42 Plus
Dvir\GJ17355-PA 269 GJ17355-PA 29..264 79..325 331 30.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:09:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22780-PA 335 GK22780-PA 1..335 1..334 1592 87.5 Plus
Dwil\GK21089-PA 276 GK21089-PA 40..275 79..328 629 49.8 Plus
Dwil\GK23887-PA 278 GK23887-PA 43..272 85..328 478 42.4 Plus
Dwil\GK23888-PA 268 GK23888-PA 29..266 79..327 353 34.9 Plus
Dwil\GK17815-PA 250 GK17815-PA 19..248 92..327 287 29.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:09:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25219-PA 334 GE25219-PA 1..334 1..334 1741 97 Plus
Dyak\GE18573-PA 270 GE18573-PA 35..264 79..324 619 49.4 Plus
Dyak\GE18574-PA 273 GE18574-PA 39..273 79..327 614 48.4 Plus
Dyak\GE16206-PA 277 GE16206-PA 42..271 85..328 458 40.8 Plus
Dyak\GE16217-PA 271 GE16217-PA 1..266 51..325 356 33.9 Plus

LP01850.hyp Sequence

Translation from 237 to 1241

> LP01850.hyp
MLLSYRCIYSVLLSTIASIMVVLSSASSGSIQLPTVRKCGGGRSAGAAHT
MAMNLAAYGLLENRISTLEAPRQTHWTKKFLAKREATPHSAPYVVSIQMM
TPDQGLVHYCAGTIINEHWILTAAHCLSSPQAVENSVIVAGSHDIHDQKG
EASNIQMRHIDYYVRHELYLGGVNPYDIALIYTKEPLVFDTYVQPATLPE
QDAQPEGYGTLYGWGNVSMTAVPNYPHRLQEANMPILDMELCEQILARSG
LPLHETNLCTGPLTGGVSICTADSGGPLIQQCCEEHFEQANIVIGIVSWG
KMPCGQKNAPSVFVRVSAFTEWINQVISTATHIM*

LP01850.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG7142-PA 334 CG7142-PA 1..334 1..334 1768 100 Plus
Phae1-PB 270 CG16996-PB 42..270 86..328 607 50.4 Plus
Phae1-PA 270 CG16996-PA 42..270 86..328 607 50.4 Plus
Phae2-PC 265 CG16997-PC 36..259 84..323 597 49.4 Plus
Phae2-PB 265 CG16997-PB 36..259 84..323 597 49.4 Plus