Clone LP01967 Report

Search the DGRC for LP01967

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:19
Well:67
Vector:pOT2
Associated Gene/TranscriptTgt-RA
Protein status:LP01967.pep: gold
Preliminary Size:1614
Sequenced Size:1561

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4947 2001-01-01 Release 2 assignment
CG4947 2001-07-04 Blastp of sequenced clone
CG4947 2003-01-01 Sim4 clustering to Release 3
Tgt 2008-04-29 Release 5.5 accounting
Tgt 2008-08-15 Release 5.9 accounting
Tgt 2008-12-18 5.12 accounting

Clone Sequence Records

LP01967.complete Sequence

1561 bp (1561 high quality bases) assembled on 2001-07-04

GenBank Submission: AY052033

> LP01967.complete
ATTGAAACGTGCACCGCCGGCGTATTGCGCGTAAACATAAGACATTTCAC
GGGGAATTTTCTGGACTTTGCTAACTCAATGGGTCCCAGCCACATTCCTC
CGCTGACCTACAAGGTCGTGGCCGAGTGCTCCGTCTCCAAAGCCCGGGCG
GGACTGATGACCCTAAGGCACAGCGAGGTAAACACCCCGGTCTTTATGCC
CGTGGGCACTCAGGGAACCTTGAAGGGCATCGTGCCGGACCAGCTCATCG
AGCTGAACTGCCAGATTCTGCTGGGGAACACCTATCACCTGGGCCTGAGG
CCCGGAATCGAGACACTGAAGAAAGCCGGTGGTCTGCACAAGTTTATGGG
CTGGCCCAGGGCCATTCTAACAGATTCCGGTGGCTTTCAGATGGTTTCCC
TGCTGCAGCTGGCCGAGATCGATGAGCACGGTGTGAACTTCCGGTCGCCC
TTTGACAACAGCCAGTGCATGCTGACGCCGGAGCACTCCATCGAAATCCA
GAACGCCATTGGTGGGGATATTATGATGCAGCTGGATGATGTGGTCAAGA
CCACAACAACTGGCCCCCGGGTGGAGGAGGCCATGGAGCGGACTATTCGC
TGGGTGGATCGCTGCATAGAGGCCCATGCCCGCGACGATGACCAGTCGCT
GTTCCCCATCGTCCAGGGAGGATTGGATGTGCCGCTGCGTCAGCGTTGCG
TTTCCGCTCTCATGGAGCGCCAGGTTCGAGGCTTCGCCGTGGGCGGGCTA
AGTGGTGGCGAGAGCAAGCACGACTTCTGGCGTATGGTGGACGTGTGCAC
TGGCTATCTGCCCAAGGACAAGCCGCGCTACCTGATGGGCGTGGGTTTTG
CGGCGGATCTGGTGGTCTGCGTGGCCCTGGGCATCGATATGTTCGACTGT
GTCTTCCCCACCCGGACAGCTCGATTTGGTTGCGCCCTGGTGGACAGTGG
GCAGCTGAACCTGAAGCAGCCCAAGTACAAACTGGACATGGAGCCCATTG
ACAAGGACTGCGACTGCAGCACGTGTAGGCGTTACACACGCTCGTACCTG
CACCACATCGCCACCAACGAGAGTGTCTCCAGCTCCCTGTTGAGCATACA
CAACGTGGCCTACCAGCTCAGGCTGATGAGGAGCATGCGGGAGGCCATTC
AGCGCGATGAGTTCCCCCAGTTCGTCGCGGACTTTATGGCGAGACACTTC
AAGGCGGAACCTGTTCCGGCTTGGATACGAGAAGCTCTGTCTGCCGTAAA
CATCCAGCTGCCTGCGGATCCGGAGAGGATTGATGAGCAGGACCAGAAGC
CAAAGACCGAAAAGAGACGGGAAACAGAGGACGTGGCGGAGGAGCAGGTG
GCCTCCAGCTAACATCATCACATAGCAACCTTTGTGTTTTGATAACCCAA
AGTTCCGACTAAGAGGCATTTCTTAATTGACACATACGTTCATGTATTTT
ACATGTCAAATGTCATGTAAGTTATTTTCATAAGAATAAATACTTAATTA
GACATAGAATAAAAAAGGAAAAATAAATTACATCATAAAATTCAAAAAAA
AAAAAAAAAAA

LP01967.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:27:37
Subject Length Description Subject Range Query Range Score Percent Strand
Tgt-RA 1576 Tgt-RA 31..1575 1..1545 7725 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:58:52
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 1184271..1185648 166..1543 6890 100 Plus
chr2L 23010047 chr2L 1184038..1184205 1..168 840 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:46:36 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:58:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1184321..1185700 166..1545 6900 100 Plus
2L 23513712 2L 1184088..1184255 1..168 840 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:50:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1184321..1185700 166..1545 6900 100 Plus
2L 23513712 2L 1184088..1184255 1..168 840 100 Plus
Blast to na_te.dros performed on 2019-03-15 19:58:51 has no hits.

LP01967.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:59:44 Download gff for LP01967.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 1184038..1184204 1..167 100 -> Plus
chr2L 1184273..1185648 168..1543 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:33:32 Download gff for LP01967.complete
Subject Subject Range Query Range Percent Splice Strand
Tgt-RA 1..1284 79..1362 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:14:30 Download gff for LP01967.complete
Subject Subject Range Query Range Percent Splice Strand
Tgt-RA 1..1284 79..1362 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:04:16 Download gff for LP01967.complete
Subject Subject Range Query Range Percent Splice Strand
Tgt-RA 1..1284 79..1362 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:45:50 Download gff for LP01967.complete
Subject Subject Range Query Range Percent Splice Strand
Tgt-RA 1..1284 79..1362 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:11:42 Download gff for LP01967.complete
Subject Subject Range Query Range Percent Splice Strand
Tgt-RA 1..1284 79..1362 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:07:42 Download gff for LP01967.complete
Subject Subject Range Query Range Percent Splice Strand
Tgt-RA 1..1543 1..1543 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:14:30 Download gff for LP01967.complete
Subject Subject Range Query Range Percent Splice Strand
Tgt-RA 1..1543 1..1543 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:04:16 Download gff for LP01967.complete
Subject Subject Range Query Range Percent Splice Strand
Tgt-RA 24..1566 1..1543 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:45:50 Download gff for LP01967.complete
Subject Subject Range Query Range Percent Splice Strand
Tgt-RA 1..1543 1..1543 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:11:42 Download gff for LP01967.complete
Subject Subject Range Query Range Percent Splice Strand
Tgt-RA 24..1566 1..1543 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:59:44 Download gff for LP01967.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1184088..1184254 1..167 100 -> Plus
2L 1184323..1185698 168..1543 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:59:44 Download gff for LP01967.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1184088..1184254 1..167 100 -> Plus
2L 1184323..1185698 168..1543 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:59:44 Download gff for LP01967.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1184088..1184254 1..167 100 -> Plus
2L 1184323..1185698 168..1543 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:04:16 Download gff for LP01967.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1184088..1184254 1..167 100 -> Plus
arm_2L 1184323..1185698 168..1543 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:23:41 Download gff for LP01967.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1184088..1184254 1..167 100 -> Plus
2L 1184323..1185698 168..1543 100   Plus

LP01967.hyp Sequence

Translation from 0 to 1361

> LP01967.hyp
IETCTAGVLRVNIRHFTGNFLDFANSMGPSHIPPLTYKVVAECSVSKARA
GLMTLRHSEVNTPVFMPVGTQGTLKGIVPDQLIELNCQILLGNTYHLGLR
PGIETLKKAGGLHKFMGWPRAILTDSGGFQMVSLLQLAEIDEHGVNFRSP
FDNSQCMLTPEHSIEIQNAIGGDIMMQLDDVVKTTTTGPRVEEAMERTIR
WVDRCIEAHARDDDQSLFPIVQGGLDVPLRQRCVSALMERQVRGFAVGGL
SGGESKHDFWRMVDVCTGYLPKDKPRYLMGVGFAADLVVCVALGIDMFDC
VFPTRTARFGCALVDSGQLNLKQPKYKLDMEPIDKDCDCSTCRRYTRSYL
HHIATNESVSSSLLSIHNVAYQLRLMRSMREAIQRDEFPQFVADFMARHF
KAEPVPAWIREALSAVNIQLPADPERIDEQDQKPKTEKRRETEDVAEEQV
ASS*

LP01967.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:24:14
Subject Length Description Subject Range Query Range Score Percent Strand
Tgt-PA 427 CG4947-PA 1..427 27..453 2245 100 Plus
CG3434-PA 418 CG3434-PA 128..379 158..390 202 26.5 Plus

LP01967.pep Sequence

Translation from 78 to 1361

> LP01967.pep
MGPSHIPPLTYKVVAECSVSKARAGLMTLRHSEVNTPVFMPVGTQGTLKG
IVPDQLIELNCQILLGNTYHLGLRPGIETLKKAGGLHKFMGWPRAILTDS
GGFQMVSLLQLAEIDEHGVNFRSPFDNSQCMLTPEHSIEIQNAIGGDIMM
QLDDVVKTTTTGPRVEEAMERTIRWVDRCIEAHARDDDQSLFPIVQGGLD
VPLRQRCVSALMERQVRGFAVGGLSGGESKHDFWRMVDVCTGYLPKDKPR
YLMGVGFAADLVVCVALGIDMFDCVFPTRTARFGCALVDSGQLNLKQPKY
KLDMEPIDKDCDCSTCRRYTRSYLHHIATNESVSSSLLSIHNVAYQLRLM
RSMREAIQRDEFPQFVADFMARHFKAEPVPAWIREALSAVNIQLPADPER
IDEQDQKPKTEKRRETEDVAEEQVASS*

LP01967.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:02:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15174-PA 420 GF15174-PA 1..418 1..417 2069 90.9 Plus
Dana\GF24662-PA 417 GF24662-PA 4..377 13..363 244 26 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:02:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24778-PA 428 GG24778-PA 1..428 1..427 2195 94.9 Plus
Dere\GG14034-PA 418 GG14034-PA 128..381 132..366 214 25.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:02:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11403-PA 412 GH11403-PA 3..408 4..409 1896 85.2 Plus
Dgri\GH16210-PA 419 GH16210-PA 126..393 132..377 201 24.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:16
Subject Length Description Subject Range Query Range Score Percent Strand
Tgt-PA 427 CG4947-PA 1..427 1..427 2245 100 Plus
CG3434-PA 418 CG3434-PA 128..379 132..364 202 26.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:02:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14537-PA 406 GI14537-PA 1..399 1..399 1954 88.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:02:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15624-PA 429 GL15624-PA 1..414 1..417 2018 88.7 Plus
Dper\GL17966-PA 417 GL17966-PA 127..380 132..366 241 27.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:02:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18546-PA 429 GA18546-PA 1..414 1..417 2017 88.7 Plus
Dpse\GA17450-PA 417 GA17450-PA 127..380 132..366 243 27.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:02:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16805-PA 427 GM16805-PA 1..427 1..427 2232 96.7 Plus
Dsec\GM24868-PA 418 GM24868-PA 128..381 132..366 222 26.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:02:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23082-PA 382 GD23082-PA 1..382 1..427 1875 84.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:02:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16961-PA 406 GJ16961-PA 1..397 1..397 1938 89.2 Plus
Dvir\GJ13186-PA 417 GJ13186-PA 152..391 160..377 223 26.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:03:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15182-PA 413 GK15182-PA 1..412 1..416 1984 87.5 Plus
Dwil\GK20504-PA 428 GK20504-PA 132..390 132..366 216 26.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:03:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17440-PA 427 GE17440-PA 1..427 1..427 2240 96.7 Plus
Dyak\GE21237-PA 418 GE21237-PA 128..381 132..366 219 27.1 Plus