Clone LP02042 Report

Search the DGRC for LP02042

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:20
Well:42
Vector:pOT2
Associated Gene/TranscriptCG2157-RA
Protein status:LP02042.pep: gold
Preliminary Size:812
Sequenced Size:961

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2157 2002-01-01 Sim4 clustering to Release 2
CG2157 2002-05-18 Blastp of sequenced clone
CG2157 2003-01-01 Sim4 clustering to Release 3
CG2157 2008-04-29 Release 5.5 accounting
CG2157 2008-08-15 Release 5.9 accounting
CG2157 2008-12-18 5.12 accounting

Clone Sequence Records

LP02042.complete Sequence

961 bp (961 high quality bases) assembled on 2002-05-18

GenBank Submission: AY118982

> LP02042.complete
GCGTGCGCATCATAGTCTTGAAGGAGCAGTTAGCCACCAGAAAGCAGTGA
ACACCACAAACCGGCAGCCACAACATGAAGTGCTTTTTTATCCTGATAGC
AACCAGTCTGGTGCTGAGTGCCTATGCCCAGGACGCGGCGGATTCTGACC
TGGAGCAGGTGGCATCCGCATCGGCACCGGATGCGGTGGCCGTGGAGGAT
CAGGTGAGCGCCGCCAGCAGCTATGCCCCGCTGCAGGATAAGAAGCAGGA
GAAGCGCTATGTTGGTGGATACGGTGGCTACGGAGCGGGCTACGGCGCGG
GATACGGCGGCTATGGCGCCGGATATGGCGCAGGATACGGCGGCTATGCC
TCTGGCCTGGGAGCCGGCTATGGAGGAGCGTACGGCAGTGGCGTCGGCGT
TGGCGTGGACAGCTACTACAATCCGTACAGCTCGCGAGCTCTGGGTGGAT
TAGATGGTGCTGCAGTGGCCGGATACGGAGGCTATGGATCCACTCTGGGC
GGCTATGGATCCGCTTTGGGTGGCTATGGATCCGCTCTTGGTGGCTATGG
ATCGGGACTTAGTGGTTATGGTGGCTCCTACAACTCGAATCCATACGCCC
TGTCATACTACAACAGCAGGCTGGGCGCTGGAGCCGGCACTGGGTATCCG
TACTACAACACCCGATTCGGCGCTGGTGGCTATCCATCCAGTTACTATAC
GAGCAACTATGGCAACAGCGTGGTGGGCGGCGGCTTGGGCGCTTTGGGCG
GAGTGCCGCCCATCGGATCGGGCTATAACTACGGTTCCGGAATCTCGGGA
ACCGTCTACTAGACACCGCACGGTCCAACGTTCAAGATCTAAGCTAGTGG
AATTTATTTTTTTTCATCGATATATTTTTTTCTAACTTTATTTTTATTAA
AAGATGCTACAAAAAAATACATTATCATAATCGTCATTTAACTAAAAAAA
AAAAAAAAAAA

LP02042.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:02:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG2157-RA 1019 CG2157-RA 43..990 1..948 4725 99.8 Plus
CG2157.a 995 CG2157.a 42..995 1..948 4640 99.2 Plus
CG1637-RC 1837 CG1637-RC 1742..1837 948..853 465 98.9 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:46:15
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 10761492..10761983 452..943 2460 100 Plus
chrX 22417052 chrX 10761048..10761414 87..453 1820 99.7 Plus
chrX 22417052 chrX 10760606..10760691 1..86 430 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:46:40 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:46:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10870181..10870677 452..948 2470 99.8 Plus
X 23542271 X 10869737..10870103 87..453 1835 100 Plus
X 23542271 X 10869306..10869391 1..86 430 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:34:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 10878279..10878775 452..948 2470 99.7 Plus
X 23527363 X 10877835..10878201 87..453 1835 100 Plus
X 23527363 X 10877404..10877489 1..86 430 100 Plus
Blast to na_te.dros performed on 2019-03-16 20:46:14 has no hits.

LP02042.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:47:19 Download gff for LP02042.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 10761494..10761983 454..943 100   Plus
chrX 10760606..10760691 1..86 100 -> Plus
chrX 10761048..10761414 87..453 99 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:33:34 Download gff for LP02042.complete
Subject Subject Range Query Range Percent Splice Strand
CG2157-RA 1..738 75..812 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:43:51 Download gff for LP02042.complete
Subject Subject Range Query Range Percent Splice Strand
CG2157-RA 1..738 75..812 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:27:53 Download gff for LP02042.complete
Subject Subject Range Query Range Percent Splice Strand
CG2157-RA 1..738 75..812 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:35:59 Download gff for LP02042.complete
Subject Subject Range Query Range Percent Splice Strand
CG2157-RA 1..738 75..812 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:53:02 Download gff for LP02042.complete
Subject Subject Range Query Range Percent Splice Strand
CG2157-RA 1..738 75..812 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:18:32 Download gff for LP02042.complete
Subject Subject Range Query Range Percent Splice Strand
CG2157-RA 1..943 1..943 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:43:51 Download gff for LP02042.complete
Subject Subject Range Query Range Percent Splice Strand
CG2157-RA 20..962 1..943 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:53 Download gff for LP02042.complete
Subject Subject Range Query Range Percent Splice Strand
CG2157-RA 23..965 1..943 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:36:00 Download gff for LP02042.complete
Subject Subject Range Query Range Percent Splice Strand
CG2157-RA 1..943 1..943 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:02 Download gff for LP02042.complete
Subject Subject Range Query Range Percent Splice Strand
CG2157-RA 23..965 1..943 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:47:19 Download gff for LP02042.complete
Subject Subject Range Query Range Percent Splice Strand
X 10869306..10869391 1..86 100 -> Plus
X 10869737..10870103 87..453 100 -> Plus
X 10870183..10870672 454..943 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:47:19 Download gff for LP02042.complete
Subject Subject Range Query Range Percent Splice Strand
X 10869306..10869391 1..86 100 -> Plus
X 10869737..10870103 87..453 100 -> Plus
X 10870183..10870672 454..943 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:47:19 Download gff for LP02042.complete
Subject Subject Range Query Range Percent Splice Strand
X 10869306..10869391 1..86 100 -> Plus
X 10869737..10870103 87..453 100 -> Plus
X 10870183..10870672 454..943 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:53 Download gff for LP02042.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10763339..10763424 1..86 100 -> Plus
arm_X 10763770..10764136 87..453 100 -> Plus
arm_X 10764216..10764705 454..943 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:08:24 Download gff for LP02042.complete
Subject Subject Range Query Range Percent Splice Strand
X 10877835..10878201 87..453 100 -> Plus
X 10878281..10878770 454..943 100   Plus
X 10877404..10877489 1..86 100 -> Plus

LP02042.hyp Sequence

Translation from 74 to 811

> LP02042.hyp
MKCFFILIATSLVLSAYAQDAADSDLEQVASASAPDAVAVEDQVSAASSY
APLQDKKQEKRYVGGYGGYGAGYGAGYGGYGAGYGAGYGGYASGLGAGYG
GAYGSGVGVGVDSYYNPYSSRALGGLDGAAVAGYGGYGSTLGGYGSALGG
YGSALGGYGSGLSGYGGSYNSNPYALSYYNSRLGAGAGTGYPYYNTRFGA
GGYPSSYYTSNYGNSVVGGGLGALGGVPPIGSGYNYGSGISGTVY*

LP02042.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:11:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG2157-PA 245 CG2157-PA 1..245 1..245 1306 100 Plus
CG2157-PB 247 CG2157-PB 1..247 1..245 1293 99.2 Plus
CG17108-PA 342 CG17108-PA 139..320 62..242 227 35.4 Plus
Cpr47Ef-PD 601 CG13214-PD 250..414 64..242 219 38 Plus
Cpr47Ef-PC 612 CG13214-PC 250..414 64..242 219 38 Plus
Cpr47Ef-PD 601 CG13214-PD 306..478 64..242 211 35.7 Plus
Cpr47Ef-PD 601 CG13214-PD 262..424 65..242 206 38.7 Plus
CG17108-PA 342 CG17108-PA 17..171 64..242 205 36.3 Plus
CG17108-PA 342 CG17108-PA 46..195 64..243 198 37.2 Plus
CG17108-PA 342 CG17108-PA 68..236 65..242 196 34.8 Plus
CG17108-PA 342 CG17108-PA 79..266 65..241 190 32.8 Plus
Cpr47Ef-PD 601 CG13214-PD 342..532 64..242 190 34.5 Plus
CG17108-PA 342 CG17108-PA 228..340 64..191 178 38.6 Plus
Cpr47Ef-PD 601 CG13214-PD 235..356 70..239 177 39.5 Plus
Cpr47Ef-PD 601 CG13214-PD 429..601 64..236 176 34.6 Plus
CG17108-PA 342 CG17108-PA 233..341 65..170 151 38.8 Plus

LP02042.pep Sequence

Translation from 74 to 811

> LP02042.pep
MKCFFILIATSLVLSAYAQDAADSDLEQVASASAPDAVAVEDQVSAASSY
APLQDKKQEKRYVGGYGGYGAGYGAGYGGYGAGYGAGYGGYASGLGAGYG
GAYGSGVGVGVDSYYNPYSSRALGGLDGAAVAGYGGYGSTLGGYGSALGG
YGSALGGYGSGLSGYGGSYNSNPYALSYYNSRLGAGAGTGYPYYNTRFGA
GGYPSSYYTSNYGNSVVGGGLGALGGVPPIGSGYNYGSGISGTVY*

LP02042.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:10:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20471-PA 240 GF20471-PA 110..240 112..245 390 90.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:10:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18375-PA 253 GG18375-PA 120..253 112..245 460 97.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:10:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24290-PA 252 GH24290-PA 1..252 1..245 374 67.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:09:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG2157-PA 245 CG2157-PA 1..245 1..245 1306 100 Plus
CG2157-PB 247 CG2157-PB 1..247 1..245 1293 99.2 Plus
CG17108-PA 342 CG17108-PA 139..320 62..242 227 35.4 Plus
Cpr47Ef-PD 601 CG13214-PD 250..414 64..242 219 38 Plus
Cpr47Ef-PC 612 CG13214-PC 250..414 64..242 219 38 Plus
Cpr47Ef-PD 601 CG13214-PD 306..478 64..242 211 35.7 Plus
CG5070-PA 209 CG5070-PA 39..199 65..229 209 38.1 Plus
Cpr47Ef-PD 601 CG13214-PD 262..424 65..242 206 38.7 Plus
Cpr47Ef-PC 612 CG13214-PC 262..424 65..242 206 38.7 Plus
CG17108-PA 342 CG17108-PA 17..171 64..242 205 36.3 Plus
CG17108-PA 342 CG17108-PA 46..195 64..243 198 37.2 Plus
CG17108-PA 342 CG17108-PA 68..236 65..242 196 34.8 Plus
CG5070-PA 209 CG5070-PA 44..191 62..191 196 39.7 Plus
Cpr47Ef-PC 612 CG13214-PC 306..474 64..242 194 35.8 Plus
Cpr47Ef-PC 612 CG13214-PC 380..543 64..242 193 38.5 Plus
CG9269-PA 146 CG9269-PA 45..146 62..174 193 49.1 Plus
CG17108-PA 342 CG17108-PA 79..266 65..241 190 32.8 Plus
Cpr47Ef-PD 601 CG13214-PD 342..532 64..242 190 34.5 Plus
CG13050-PA 143 CG13050-PA 43..140 70..166 190 48.5 Plus
CG14191-PA 193 CG14191-PA 46..171 62..171 190 38.5 Plus
CG8160-PA 212 CG8160-PA 40..180 65..223 187 35.1 Plus
CG15597-PB 149 CG15597-PB 27..141 64..167 181 41.5 Plus
CG17108-PA 342 CG17108-PA 228..340 64..191 178 38.6 Plus
CG10597-PB 200 CG10597-PB 56..196 54..225 178 37.1 Plus
Cpr47Ef-PD 601 CG13214-PD 235..356 70..239 177 39.5 Plus
Cpr47Ef-PC 612 CG13214-PC 235..356 70..239 177 39.5 Plus
Cpr47Ef-PC 612 CG13214-PC 317..489 62..242 177 36.5 Plus
TwdlT-PA 286 CG5812-PA 27..128 64..168 177 41.5 Plus
Cpr47Ef-PD 601 CG13214-PD 429..601 64..236 176 34.6 Plus
Cpr47Ef-PC 612 CG13214-PC 440..612 64..236 176 35.3 Plus
CG15597-PB 149 CG15597-PB 34..145 64..165 174 40.9 Plus
CG14191-PA 193 CG14191-PA 89..172 65..161 173 45.9 Plus
CG14191-PA 193 CG14191-PA 22..163 64..242 173 34.3 Plus
CG9757-PB 127 CG9757-PB 18..127 30..157 172 36.7 Plus
CG9757-PA 127 CG9757-PA 18..127 30..157 172 36.7 Plus
CG10597-PB 200 CG10597-PB 14..161 75..238 171 33.3 Plus
prc-PB 1713 CG5700-PB 586..770 65..231 171 35.6 Plus
Cpr47Ef-PC 612 CG13214-PC 280..459 64..242 169 36.5 Plus
Cpr47Ef-PC 612 CG13214-PC 407..559 64..245 169 35.5 Plus
CG5172-PD 172 CG5172-PD 27..172 64..234 169 34.7 Plus
prc-PB 1713 CG5700-PB 603..793 65..242 167 34.9 Plus
Edg91-PB 151 CG7539-PB 31..144 64..190 165 38.5 Plus
Edg91-PA 159 CG7539-PA 39..152 64..190 165 38.5 Plus
prc-PB 1713 CG5700-PB 933..1109 65..242 164 36 Plus
CG9083-PB 317 CG9083-PB 132..307 70..242 164 33 Plus
CG9269-PA 146 CG9269-PA 46..140 131..221 162 42.3 Plus
CG14191-PA 193 CG14191-PA 36..182 67..203 162 35.9 Plus
CG8160-PA 212 CG8160-PA 19..161 98..242 162 32.7 Plus
CG13376-PC 193 CG13376-PC 61..178 64..191 162 39.1 Plus
CG13376-PB 200 CG13376-PB 68..185 64..191 162 39.1 Plus
CG13376-PD 204 CG13376-PD 72..189 64..191 162 39.1 Plus
CG32521-PD 388 CG32521-PD 73..312 30..239 162 32.5 Plus
CG32521-PB 388 CG32521-PB 73..312 30..239 162 32.5 Plus
CG32521-PA 388 CG32521-PA 73..312 30..239 162 32.5 Plus
sqd-PD 178 CG16901-PD 70..168 64..167 161 43.4 Plus
sqd-PB 344 CG16901-PB 236..334 64..167 161 43.4 Plus
CG14191-PA 193 CG14191-PA 15..172 66..239 160 34.1 Plus
CG5172-PD 172 CG5172-PD 24..171 72..239 159 35.1 Plus
prc-PB 1713 CG5700-PB 501..690 65..242 159 33.5 Plus
CG12523-PB 250 CG12523-PB 18..240 62..242 159 29.7 Plus
CG12523-PA 250 CG12523-PA 18..240 62..242 159 29.7 Plus
CG32521-PI 323 CG32521-PI 6..247 6..239 159 30.5 Plus
Hrb87F-PE 385 CG12749-PE 203..375 64..242 158 33 Plus
Hrb87F-PD 385 CG12749-PD 203..375 64..242 158 33 Plus
Hrb87F-PC 385 CG12749-PC 203..375 64..242 158 33 Plus
Hrb87F-PA 385 CG12749-PA 203..375 64..242 158 33 Plus
mahe-PC 945 CG10777-PC 3..164 47..202 158 37.1 Plus
mahe-PB 945 CG10777-PB 3..164 47..202 158 37.1 Plus
prc-PB 1713 CG5700-PB 660..870 65..242 157 33.2 Plus
HnRNP-K-PD 315 CG13425-PD 25..223 56..242 157 29.3 Plus
HnRNP-K-PB 413 CG13425-PB 120..318 56..242 157 29.3 Plus
HnRNP-K-PE 493 CG13425-PE 203..401 56..242 157 29.3 Plus
HnRNP-K-PF 496 CG13425-PF 203..401 56..242 157 29.3 Plus
HnRNP-K-PA 496 CG13425-PA 203..401 56..242 157 29.3 Plus
HnRNP-K-PC 502 CG13425-PC 209..407 56..242 157 29.3 Plus
prc-PB 1713 CG5700-PB 382..578 65..242 156 33 Plus
prc-PB 1713 CG5700-PB 433..629 65..238 156 35.2 Plus
HnRNP-K-PD 315 CG13425-PD 4..197 59..242 156 30.5 Plus
HnRNP-K-PB 413 CG13425-PB 99..292 59..242 156 30.5 Plus
HnRNP-K-PE 493 CG13425-PE 182..375 59..242 156 30.5 Plus
HnRNP-K-PF 496 CG13425-PF 182..375 59..242 156 30.5 Plus
HnRNP-K-PA 496 CG13425-PA 182..375 59..242 156 30.5 Plus
HnRNP-K-PC 502 CG13425-PC 188..381 59..242 156 30.5 Plus
CG15140-PB 335 CG15140-PB 135..313 63..242 155 32.8 Plus
prc-PB 1713 CG5700-PB 450..651 65..239 154 35.5 Plus
CG17032-PB 312 CG17032-PB 70..274 39..241 154 27.3 Plus
CG17032-PA 312 CG17032-PA 70..274 39..241 154 27.3 Plus
prc-PB 1713 CG5700-PB 348..527 65..242 153 33 Plus
prc-PB 1713 CG5700-PB 552..753 65..243 153 31.7 Plus
CG15140-PB 335 CG15140-PB 46..248 21..226 153 30 Plus
CG17549-PE 262 CG17549-PE 10..241 40..241 153 28.1 Plus
CG17549-PC 262 CG17549-PC 10..241 40..241 153 28.1 Plus
CG17549-PB 262 CG17549-PB 10..241 40..241 153 28.1 Plus
sqd-PD 178 CG16901-PD 59..168 124..242 152 38.8 Plus
sqd-PB 344 CG16901-PB 225..334 124..242 152 38.8 Plus
CG17108-PA 342 CG17108-PA 233..341 65..170 151 38.8 Plus
TwdlT-PA 286 CG5812-PA 19..127 71..226 151 34 Plus
prc-PB 1713 CG5700-PB 132..306 67..242 151 33.2 Plus
TwdlT-PA 286 CG5812-PA 20..128 70..189 150 33.3 Plus
prc-PB 1713 CG5700-PB 979..1182 65..242 150 33 Plus
CG10598-PC 173 CG10598-PC 26..172 63..237 150 33 Plus
CG10598-PA 173 CG10598-PA 26..172 63..237 150 33 Plus
CG9083-PB 317 CG9083-PB 47..253 64..239 149 25.8 Plus
CG10597-PB 200 CG10597-PB 74..197 64..165 145 36.3 Plus
CG5172-PD 172 CG5172-PD 55..172 59..169 145 36.3 Plus
Edg91-PB 151 CG7539-PB 26..146 95..211 144 38.8 Plus
Edg91-PA 159 CG7539-PA 34..154 95..211 144 38.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:10:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16415-PA 292 GI16415-PA 40..188 42..175 236 56.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:10:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14327-PA 236 GL14327-PA 1..236 1..245 371 55.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:10:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15273-PA 258 GA15273-PA 1..258 1..245 475 62.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:10:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11440-PA 245 GM11440-PA 1..245 1..245 1092 98.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:10:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16990-PA 245 GD16990-PA 1..245 1..245 1099 99.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:10:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17037-PA 255 GJ17037-PA 1..255 1..245 401 63.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:10:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25142-PA 212 GK25142-PA 1..212 1..245 482 56.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:10:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15893-PA 246 GE15893-PA 1..246 1..245 1073 96.7 Plus