Clone LP02089 Report

Search the DGRC for LP02089

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:20
Well:89
Vector:pOT2
Associated Gene/TranscriptCG13385-RA
Protein status:LP02089.pep: gold
Preliminary Size:1089
Sequenced Size:1192

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13385 2002-01-01 Sim4 clustering to Release 2
CG13385 2002-05-18 Blastp of sequenced clone
CG13385 2003-01-01 Sim4 clustering to Release 3
CG13385 2008-04-29 Release 5.5 accounting
CG13385 2008-08-15 Release 5.9 accounting
CG13385 2008-12-18 5.12 accounting

Clone Sequence Records

LP02089.complete Sequence

1192 bp (1192 high quality bases) assembled on 2002-05-18

GenBank Submission: AY118984

> LP02089.complete
ATTGCTCGTGATAAATCTCCCATAGCGATGGAGTCGAGGGTCACCAGCGG
CACAGGTCCACCGAACACCATTATGATCCAGCTGGTGTCCCAACAGCCCA
GTTCCTGTGGACAGATGCAGGCCATGCCCATTTCGGTGCAGACGATACCC
TTGTTCCCCAATTCCAGAACATCGACAGAGCGACCTTGTCGATCGGTCTC
CATTGCCCCGAATGTAAGACCTCCAACGGATGTCCCTCCTCCTCGAAGGA
ATTTAAGAATCCGACCCGAGGAATATGCGACACCCAAGCGGAAGAATTCG
CAAAGCCAGTTTCGTCATTTCTCCCGCAGCATAAACCAACCTCCACCGGT
GTACTATGTTCTTCGACCAGAAGACCGTATTATGCCCATCTACATACCAC
CTCCGAGGTTTAACAATGAGCAAGGATCAAGGATGGCGACGGAGTGTCCT
TGCTGTGGCCATGCCAAGTCATTGAACCCGGAGGAACCTCTAAGAGTCCA
CGTAGCGCAGAAAGAGTTTGTCAAATTAGAGAAGGCAACTCCTGGACATC
GGGATCAATGTACTAACACCATTGACCAGCCAGATGTGGGAAATATAAGG
ACGATTTACGAAACATTGGGACGCGCAATGGTCACTGCAGCCGTGGAGGC
AGCCCAGAGATCCCAGCCAGCAGGACCCTCAGATCCGACAAATGTAATAT
TGAAACTATTAACCCAATTGGGGGAGCAGAATCAAACAACAGGCTTGAGT
CCACATTCAGAAGCAGTAGCAGAAAGTCCCGACCACCAACCACATATGCG
CAGGCCCAAAGCTAGCTTTACGGAAGCAGTCCGCATGATGGAGAGGACCT
CGTCTGATCCTTCCATTGCTAAAGGGCCACCAGATGAGCTAGATGACCAA
CGTAGGCTTCCATCTGTACTCTCCGATGGTCGTCTTCGCGTCGAATATCC
GAAAACGCCTAGACCAACACCAACATACTCCGTCGAATCTGAAAACACCC
TCAGTAATCATATGTCCTCGGAGAGATTAAGACTCGATTCTGGTTCCTCG
CCAAACCTGGGAAACTCCATTGGACATAGCCAAGCGTAGCAATGAAATGA
TCTTCACCGAAGTACCCTAGATCAGAATATAAATTATCTTCCACATGACC
ATAAATAAACTGCGTTGAAGCTTTAAAAAAAAAAAAAAAAAA

LP02089.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:02:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG13385-RA 1174 CG13385-RA 1..1174 1..1174 5870 100 Plus
CG13385.a 1250 CG13385.a 70..1220 26..1176 5755 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:15:59
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 8395623..8396796 1..1174 5840 99.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:46:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:15:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8396713..8397888 1..1176 5880 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:34:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8396713..8397888 1..1176 5880 100 Plus
Blast to na_te.dros performed on 2019-03-16 12:15:58 has no hits.

LP02089.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:17:02 Download gff for LP02089.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 8395623..8396796 1..1174 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:33:36 Download gff for LP02089.complete
Subject Subject Range Query Range Percent Splice Strand
CG13385-RA 1..1062 28..1089 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:43:38 Download gff for LP02089.complete
Subject Subject Range Query Range Percent Splice Strand
CG13385-RA 1..1062 28..1089 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:04:36 Download gff for LP02089.complete
Subject Subject Range Query Range Percent Splice Strand
CG13385-RA 1..1062 28..1089 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:35:48 Download gff for LP02089.complete
Subject Subject Range Query Range Percent Splice Strand
CG13385-RA 1..1062 28..1089 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:40:47 Download gff for LP02089.complete
Subject Subject Range Query Range Percent Splice Strand
CG13385-RA 1..1062 28..1089 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:18:16 Download gff for LP02089.complete
Subject Subject Range Query Range Percent Splice Strand
CG13385-RA 1..1174 1..1174 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:43:38 Download gff for LP02089.complete
Subject Subject Range Query Range Percent Splice Strand
CG13385-RA 1..1174 1..1174 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:04:36 Download gff for LP02089.complete
Subject Subject Range Query Range Percent Splice Strand
CG13385-RA 1..1174 1..1174 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:35:48 Download gff for LP02089.complete
Subject Subject Range Query Range Percent Splice Strand
CG13385-RA 1..1174 1..1174 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:40:47 Download gff for LP02089.complete
Subject Subject Range Query Range Percent Splice Strand
CG13385-RA 65..1238 1..1174 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:17:02 Download gff for LP02089.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8396713..8397886 1..1174 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:17:02 Download gff for LP02089.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8396713..8397886 1..1174 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:17:02 Download gff for LP02089.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8396713..8397886 1..1174 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:04:36 Download gff for LP02089.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8396713..8397886 1..1174 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:08:11 Download gff for LP02089.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8396713..8397886 1..1174 100   Plus

LP02089.hyp Sequence

Translation from 0 to 1088

> LP02089.hyp
IARDKSPIAMESRVTSGTGPPNTIMIQLVSQQPSSCGQMQAMPISVQTIP
LFPNSRTSTERPCRSVSIAPNVRPPTDVPPPRRNLRIRPEEYATPKRKNS
QSQFRHFSRSINQPPPVYYVLRPEDRIMPIYIPPPRFNNEQGSRMATECP
CCGHAKSLNPEEPLRVHVAQKEFVKLEKATPGHRDQCTNTIDQPDVGNIR
TIYETLGRAMVTAAVEAAQRSQPAGPSDPTNVILKLLTQLGEQNQTTGLS
PHSEAVAESPDHQPHMRRPKASFTEAVRMMERTSSDPSIAKGPPDELDDQ
RRLPSVLSDGRLRVEYPKTPRPTPTYSVESENTLSNHMSSERLRLDSGSS
PNLGNSIGHSQA*

LP02089.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:06:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG13385-PA 353 CG13385-PA 1..353 10..362 1857 100 Plus

LP02089.pep Sequence

Translation from 27 to 1088

> LP02089.pep
MESRVTSGTGPPNTIMIQLVSQQPSSCGQMQAMPISVQTIPLFPNSRTST
ERPCRSVSIAPNVRPPTDVPPPRRNLRIRPEEYATPKRKNSQSQFRHFSR
SINQPPPVYYVLRPEDRIMPIYIPPPRFNNEQGSRMATECPCCGHAKSLN
PEEPLRVHVAQKEFVKLEKATPGHRDQCTNTIDQPDVGNIRTIYETLGRA
MVTAAVEAAQRSQPAGPSDPTNVILKLLTQLGEQNQTTGLSPHSEAVAES
PDHQPHMRRPKASFTEAVRMMERTSSDPSIAKGPPDELDDQRRLPSVLSD
GRLRVEYPKTPRPTPTYSVESENTLSNHMSSERLRLDSGSSPNLGNSIGH
SQA*

LP02089.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:07:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10547-PA 347 GG10547-PA 1..347 1..353 1246 71 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:24:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG13385-PA 353 CG13385-PA 1..353 1..353 1857 100 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:07:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16929-PA 342 GM16929-PA 1..342 1..353 1568 85.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:07:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23536-PA 342 GD23536-PA 1..342 1..353 1572 86.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:07:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18767-PA 358 GE18767-PA 1..358 1..353 1207 70.8 Plus