Clone LP02169 Report

Search the DGRC for LP02169

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:21
Well:69
Vector:pOT2
Associated Gene/TranscriptSocs44A-RA
Protein status:LP02169.pep: gold
Preliminary Size:1103
Sequenced Size:1803

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2160 2002-01-01 Sim4 clustering to Release 2
CG2160 2002-05-18 Blastp of sequenced clone
CG2160 2003-01-01 Sim4 clustering to Release 3
Socs44A 2008-04-29 Release 5.5 accounting
Socs44A 2008-08-15 Release 5.9 accounting
Socs44A 2008-12-18 5.12 accounting

Clone Sequence Records

LP02169.complete Sequence

1803 bp (1803 high quality bases) assembled on 2002-05-18

GenBank Submission: AY118985

> LP02169.complete
TCACGGCTCCGAATTAGATCAATGATGTAATTCCACCACGAGGAAGCTCC
GATCCGATCCGATTCCACTCCAAAATGAGCCACGGCGACCAGAGTCAAAA
CCAGAGCAGCCAGCGGAGCCAGGCGCTCACTGGCGGTGGTGACTCCCCGA
GGGACAGGGAGAAGGAAAAGAAGGGCTGGTTCCACTCGCTGACCAGGCGC
AAGAAGTCCGACTCGGCGCTGGCCGTGACTGCATCCGCCGCCGTCTCCAC
CAGTGGATCGCAGAACAACAACAACGAAGTGTGCGTCCTTGAGGCAGCGG
ACTCTTCCATGGCCAGCTGCAGCAATGGGGGCACGGGCACAGGAACTCTG
CGCAGAAGGCGGGACAAGGACAAGCGAAACGTGTTTGCCAGACTACGAAG
GAAGGTGGGCCAAGGGCTCAGCTCCCTGCGAAACTGGCACTCCATGGGCG
ACTGCGACGACGGCGGAACTACTGATGCCACCTACGAGTTCCTTACGCCG
GCCATCTGTCCGGAACCCACGCTACCATTCACACACGACTACTTGCGCTT
TATCCGGAAGAAATGGCTTGAGCGCGAGGACGCCCACTCGCCCAACCAGA
TCATGTACAAGGCCTGCTCCGAGATGCTCAACCAAGTGTGGTACTGGGGT
GAGATCTCCAGGCGCGATTCGCAGCGGCAGTTGAGTGACAAGCCGACTGG
GTCGTTTCTAGTCCGCGACTCGGAAACCAGCGGATCCCAATTCACGCTCA
GCTTTCGGATTGTGAACGTAACCCTGCATTATCGACTGGAATATCGCGAC
AATTTTTGGCACTTCGAGGAACTTAAGTACGAGTCCATTGTCGAGATGAT
CGAAGATATCTTGCACCGCTGCACCAACGACAACTTTGTGTGCTTTGTGA
AGGTTCCCAACGAGATGCAGCCACCGTTTCCAGTGATCCTCAAGTACCCG
TTGAGCCGGTACTCCAACATGCCCAAGCTGCAGGACTTATGCCGCCGTGT
TCTGCAGCGCCAGATGTCTCGCGAACAGCTGGCCCAGTTGCCAGTGCCGG
CGCAGATGCTGGAGTACTTGTCGGTGGAGCGGGAGCTGGTCTTCCAGAGT
TAGGCAACCGCCGCCCGCCGTCGAGAAGCCGCTGGTCAAAGCTTTAACAC
TGAAGTAAACGCAAGCGCGTACACCAAAGAGGTCCGGGCGAATGGAATCC
CAGCCTGCAGTTGTTCGTAATGATATTTGTTGGTCGGATTGGCAATATGT
TGTTGATGCATTTCTACGCCCCAGTAACTAAGCGCACAGTCTCTCTTCAC
GTGCACGCCGGAATCCCAGTGCACAGAATTTTACTGTATTGTACTGCTAA
GTACGGTTAGTACTAGTATCTTGTCTAGGATAATGTATTATGTTATTTGC
CATATTTAGTCTATTGGTTTGTTTTATATGGGTCCTGGTCAAGTCTATAC
TCTGCACCACAGTGTGCAAATCCTTAAGCAAATTTTTAAACATTGAACTA
CTGCATATATGTATTAACGTAAGTTCTAAGCCAGATGTATCGTACTATTT
ACGTTGTTTGCATTTTTGTATTCCTAACTTGGACACTAACTTTTTGCTAA
TCTAGATTGCATGGAATTTAGGCAGCTTTACGGCAATCGAATACGTTCAA
TGCCAATTACTCTTGTTGCAACGTGTATGTATTTTATTTAAATCTATCTA
TGAATATTTTACAAGAACAAAATATCAATCAACTCCTTGAGCGATCTTGC
AGTCAAAGGAGCTCGCAAATAAAGAAAAAATCACAAAAAAAAAAAAAAAA
AAA

LP02169.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:02:34
Subject Length Description Subject Range Query Range Score Percent Strand
Socs44A-RA 1930 Socs44A-RA 147..1930 1..1784 8920 100 Plus
Pbp49-RB 1896 Pbp49-RB 1769..1896 1789..1662 625 99.2 Minus
CG42516-RB 1896 CG42516-RB 1769..1896 1789..1662 625 99.2 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:32:53
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 4015813..4016965 632..1784 5765 100 Plus
chr2R 21145070 chr2R 4015120..4015750 1..631 3155 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:46:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:32:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8128324..8129481 632..1789 5775 99.9 Plus
2R 25286936 2R 8127631..8128261 1..631 3155 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:34:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 8129523..8130680 632..1789 5775 99.9 Plus
2R 25260384 2R 8128830..8129460 1..631 3155 100 Plus
Blast to na_te.dros performed 2019-03-16 04:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
Doc 4725 Doc DMW1DOC 4725bp Derived from X17551 (g8821) (Rel. 29, Last updated, Version 2). 1689..1752 1101..1038 113 64.1 Minus

LP02169.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:33:52 Download gff for LP02169.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 4015120..4015750 1..631 100 -> Plus
chr2R 4015813..4016965 632..1784 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:33:41 Download gff for LP02169.complete
Subject Subject Range Query Range Percent Splice Strand
Socs44A-RA 1..1029 75..1103 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:43:39 Download gff for LP02169.complete
Subject Subject Range Query Range Percent Splice Strand
Socs44A-RA 1..1029 75..1103 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:33:21 Download gff for LP02169.complete
Subject Subject Range Query Range Percent Splice Strand
Socs44A-RA 1..1029 75..1103 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:35:49 Download gff for LP02169.complete
Subject Subject Range Query Range Percent Splice Strand
Socs44A-RA 1..1029 75..1103 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:43:09 Download gff for LP02169.complete
Subject Subject Range Query Range Percent Splice Strand
Socs44A-RA 1..1029 75..1103 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:18:18 Download gff for LP02169.complete
Subject Subject Range Query Range Percent Splice Strand
Socs44A-RA 1..1784 1..1784 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:43:39 Download gff for LP02169.complete
Subject Subject Range Query Range Percent Splice Strand
Socs44A-RA 1..1784 1..1784 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:33:21 Download gff for LP02169.complete
Subject Subject Range Query Range Percent Splice Strand
Socs44A-RA 57..1840 1..1784 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:35:49 Download gff for LP02169.complete
Subject Subject Range Query Range Percent Splice Strand
Socs44A-RA 1..1784 1..1784 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:43:09 Download gff for LP02169.complete
Subject Subject Range Query Range Percent Splice Strand
Socs44A-RA 57..1840 1..1784 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:33:52 Download gff for LP02169.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8127631..8128261 1..631 100 -> Plus
2R 8128324..8129476 632..1784 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:33:52 Download gff for LP02169.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8127631..8128261 1..631 100 -> Plus
2R 8128324..8129476 632..1784 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:33:52 Download gff for LP02169.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8127631..8128261 1..631 100 -> Plus
2R 8128324..8129476 632..1784 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:33:21 Download gff for LP02169.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4015136..4015766 1..631 100 -> Plus
arm_2R 4015829..4016981 632..1784 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:08:12 Download gff for LP02169.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8129523..8130675 632..1784 100   Plus
2R 8128830..8129460 1..631 100 -> Plus

LP02169.pep Sequence

Translation from 74 to 1102

> LP02169.pep
MSHGDQSQNQSSQRSQALTGGGDSPRDREKEKKGWFHSLTRRKKSDSALA
VTASAAVSTSGSQNNNNEVCVLEAADSSMASCSNGGTGTGTLRRRRDKDK
RNVFARLRRKVGQGLSSLRNWHSMGDCDDGGTTDATYEFLTPAICPEPTL
PFTHDYLRFIRKKWLEREDAHSPNQIMYKACSEMLNQVWYWGEISRRDSQ
RQLSDKPTGSFLVRDSETSGSQFTLSFRIVNVTLHYRLEYRDNFWHFEEL
KYESIVEMIEDILHRCTNDNFVCFVKVPNEMQPPFPVILKYPLSRYSNMP
KLQDLCRRVLQRQMSREQLAQLPVPAQMLEYLSVERELVFQS*

LP02169.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:07:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13665-PA 340 GF13665-PA 1..340 1..342 1390 83.5 Plus
Dana\GF19453-PA 1086 GF19453-PA 895..1062 170..333 229 32 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:07:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23337-PA 340 GG23337-PA 1..340 1..342 1789 96.8 Plus
Dere\GG18161-PA 1021 GG18161-PA 850..997 189..333 227 34.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:07:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21907-PA 383 GH21907-PA 37..383 6..342 1280 72.1 Plus
Dgri\GH24784-PA 1068 GH24784-PA 877..1043 170..332 232 32.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:06:41
Subject Length Description Subject Range Query Range Score Percent Strand
Socs44A-PA 342 CG2160-PA 1..342 1..342 1810 100 Plus
Socs16D-PB 1021 CG8146-PB 783..997 129..333 227 30.1 Plus
Socs16D-PA 1016 CG8146-PA 845..992 189..333 225 34.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:07:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19258-PA 388 GI19258-PA 41..388 6..342 1205 70.3 Plus
Dmoj\GI14684-PA 608 GI14684-PA 377..581 132..332 242 29.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:07:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17106-PA 348 GL17106-PA 1..348 1..342 1360 76.1 Plus
Dper\GL14567-PA 1099 GL14567-PA 928..1075 189..333 228 34.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:07:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15275-PA 348 GA15275-PA 1..348 1..342 1361 75.5 Plus
Dpse\GA20849-PA 1101 GA20849-PA 930..1077 189..333 228 34.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:07:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21010-PA 340 GM21010-PA 1..340 1..342 1804 97.7 Plus
Dsec\GM22852-PA 1026 GM22852-PA 855..1002 189..333 227 34.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:07:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10544-PA 340 GD10544-PA 1..340 1..342 1812 98.2 Plus
Dsim\GD15367-PA 201 GD15367-PA 1..182 1..188 685 83.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:07:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22133-PA 382 GJ22133-PA 43..382 11..342 1234 73 Plus
Dvir\GJ16590-PA 1091 GJ16590-PA 862..1067 132..333 239 29 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:07:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23191-PA 352 GK23191-PA 3..352 9..342 1237 70.3 Plus
Dwil\GK25620-PA 1186 GK25620-PA 1015..1162 189..333 232 34.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:07:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19179-PA 340 GE19179-PA 1..340 1..342 1782 96.2 Plus
Dyak\GE15570-PA 1030 GE15570-PA 859..1006 189..333 227 34.2 Plus

LP02169.hyp Sequence

Translation from 74 to 1102

> LP02169.hyp
MSHGDQSQNQSSQRSQALTGGGDSPRDREKEKKGWFHSLTRRKKSDSALA
VTASAAVSTSGSQNNNNEVCVLEAADSSMASCSNGGTGTGTLRRRRDKDK
RNVFARLRRKVGQGLSSLRNWHSMGDCDDGGTTDATYEFLTPAICPEPTL
PFTHDYLRFIRKKWLEREDAHSPNQIMYKACSEMLNQVWYWGEISRRDSQ
RQLSDKPTGSFLVRDSETSGSQFTLSFRIVNVTLHYRLEYRDNFWHFEEL
KYESIVEMIEDILHRCTNDNFVCFVKVPNEMQPPFPVILKYPLSRYSNMP
KLQDLCRRVLQRQMSREQLAQLPVPAQMLEYLSVERELVFQS*

LP02169.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:52
Subject Length Description Subject Range Query Range Score Percent Strand
Socs44A-PA 342 CG2160-PA 1..342 1..342 1810 100 Plus
Socs16D-PB 1021 CG8146-PB 783..997 129..333 227 30.1 Plus
Socs16D-PA 1016 CG8146-PA 845..992 189..333 225 34.2 Plus