Clone LP02262 Report

Search the DGRC for LP02262

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:22
Well:62
Vector:pOT2
Associated Gene/Transcriptl(1)G0255-RB
Protein status:LP02262.pep: gold
Sequenced Size:1653

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
l(1)G0255-RB 2009-06-22 Replacement based on scoring

Clone Sequence Records

LP02262.complete Sequence

1653 bp assembled on 2009-08-13

GenBank Submission: BT099624.1

> LP02262.complete
TCGTCCTCTGATTTGTTCACTCTGATTGCCATAGTCTCAATTTGGCTTCA
CTTACTTACTATCTGTCATATCTGCATCTGAAATGGCCTCCCAGGAGTTT
CGCGTGGAGAGCGACACCTTTGGCGAACTGAAGGTGCCCGCGGATAAGTA
CTATGGCGCCCAAACGATGCGATCCCAGATCAATTTCCCCATCGGCGGAG
CCACCGAACGGATGCCCAAACCCGTGGTCCAGGCCATGGGCATCCTGAAG
AAGGCCGCCGCCGAGGTGAACAAGGAGTTCGGACTGGACAGCAAGGTTAG
CGAGGCGATCTCGAAGGCGGCCGACGATGTGATCTCTGGCAAGCTATACG
ACGACCACTTCCCGCTGGTCATCTGGCAGACGGGCTCGGGCACGCAGAGC
AACATGAATGTGAATGAGGTGATCAGCAATCGTGCCATTGAGCTGCTGGG
CGGCAAACTGGGCTCCAAGACGCCCGTGCATCCCAACGATCATGTGAACA
AATCGCAGAGCTCCAACGATACCTTCCCCACCGCCATTCACATCTCGGTG
GCGCTGGAGCTGAACAACAACCTTAAGCCGGCGATTAAGACGCTGCACGA
TGCGCTGCGTGCCAAGTCGGAGGAGTTCAAGGACATTATCAAGATCGGAC
GCACGCATACGATGGATGCGGTGCCATTGACGCTGGGCCAAGAGTTCAGC
GGCTATGCCCAGCAATTGGCCTACGCCCAGGAGCGCATCGATGCCTGTCT
GCCGCGCGTCTATGAGCTGGCTCTGGGCGGCACTGCTGTGGGTACGGGTC
TGAACACACGCAAGGGATTCGCCGAGAAGTGCGCTGCAAAGATCGCCGAG
CTGACCAGCCTGCCCTTCGTTACCGCGCCCAACAAGTTCGAGGCACTGGC
TGCCCGCGATGCCATGGTGGAGGTGCATGGTGTGCTCAACACGATCGCCG
TTAGCCTGATGAAGATTGCCAACGATATTCGTTTCCTTGGCTCCGGACCG
CGTTGCGGTTTGGGTGAGCTCTCGCTACCGGAGAACGAGCCAGGTAGCTC
CATCATGCCCGGCAAGGTGAATCCCACGCAATGCGAGTCGCTGACAATGC
TCTCCGCCCAGGTGATGGGCAATCAGGTGGCGGTGACCATCGGTGGATCC
AATGGGCACTTCGAGCTGAATGTATTCAAGCCCCTGATCGTGTCCAATGT
GCTGCGCTCCATTCGGCTATTGTCTGATGGCAGCAGGACCTTCACTGCCA
ACTGTGTGAATGGCATCCAGGCGAACCGCGAGAATATTGCCAAGATCATG
AACGAGTCGCTCATGCTGGTGACCGCTCTGAATCCGCACATTGGTTACGA
CAAGGCTGCGAAAATTGCAAAGACGGCGCACAAGAATGGCACCACACTCA
AGGAGGAGGCCATCAATTTGGGTTACCTGACGGAGCAGCAGTTCAACGAC
TGGGTGCGACCCGAACAGATGCTGGGACCCAAGTGAAGTGGAGCCAAGTA
GGCCGACGACGAAATCCATCATTCAATCATCGCTGTCATCGGAATCGCAG
TGTGATTTTCTAGATCAGATCGTTTTGTTGTATATGAATCGCTCGGAAAC
ACAGAACCAAATAATAATTGAAAATGCTGAAGCAAAAAAAAAAAAAAAAA
AAA

LP02262.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:30:41
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0255-RB 1717 l(1)G0255-RB 77..1712 1..1637 8145 99.9 Plus
l(1)G0255.a 1692 l(1)G0255.a 134..1687 83..1637 7735 99.9 Plus
l(1)G0255-RA 1707 l(1)G0255-RA 150..1702 84..1637 7730 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:25:28
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 6572738..6573544 417..1223 3960 99.4 Plus
chrX 22417052 chrX 6574677..6575475 417..1215 2135 84.5 Plus
chrX 22417052 chrX 6573610..6574018 1224..1633 1970 99.3 Plus
chr3L 24539361 chr3L 11454868..11455855 1212..228 1545 77.3 Minus
chrX 22417052 chrX 6572470..6572673 218..421 975 98.5 Plus
chrX 22417052 chrX 6571997..6572129 85..217 665 100 Plus
chr2L 23010047 chr2L 10189070..10189381 1213..902 540 78.2 Minus
chrX 22417052 chrX 6571848..6571933 1..86 430 100 Plus
chrX 22417052 chrX 6575544..6575730 1224..1410 350 79.1 Plus
chr3L 24539361 chr3L 11454615..11454776 1410..1249 285 78.4 Minus
chrX 22417052 chrX 6574398..6574585 224..408 230 76.1 Plus
chr2L 23010047 chr2L 10189731..10189882 552..401 190 75 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:46:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:25:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6680566..6681372 417..1223 4035 100 Plus
X 23542271 X 6682504..6683302 417..1215 2180 84.9 Plus
X 23542271 X 6681437..6681849 1224..1637 2020 99.8 Plus
3L 28110227 3L 11464094..11465081 1212..228 1545 77.3 Minus
X 23542271 X 6680298..6680501 218..421 1020 100 Plus
X 23542271 X 6679825..6679957 85..217 665 100 Plus
2L 23513712 2L 10190186..10190497 1213..902 540 78.2 Minus
X 23542271 X 6679676..6679761 1..86 430 100 Plus
X 23542271 X 6683371..6683557 1224..1410 335 78.6 Plus
3L 28110227 3L 11463841..11464002 1410..1249 285 78.4 Minus
X 23542271 X 6682225..6682412 224..408 230 76.1 Plus
2L 23513712 2L 10190847..10190998 552..401 190 75 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:26:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 6688664..6689470 417..1223 4035 100 Plus
X 23527363 X 6689535..6689947 1224..1637 2030 99.7 Plus
X 23527363 X 6691033..6691400 848..1215 1300 90.2 Plus
X 23527363 X 6688396..6688599 218..421 1020 100 Plus
X 23527363 X 6687923..6688055 85..217 665 100 Plus
X 23527363 X 6690797..6691014 612..829 640 86.2 Plus
3L 28103327 3L 11457194..11457456 1212..950 625 82.5 Minus
2L 23513712 2L 10190186..10190497 1213..902 540 78.2 Minus
3L 28103327 3L 11457953..11458181 453..228 490 81.6 Minus
X 23527363 X 6690602..6690750 417..565 475 87.9 Plus
X 23527363 X 6687774..6687859 1..86 430 100 Plus
3L 28103327 3L 11457575..11457795 831..611 340 76.9 Minus
X 23527363 X 6691536..6691655 1291..1410 300 83.3 Plus
3L 28103327 3L 11456941..11457102 1410..1249 285 78.3 Minus
3L 28103327 3L 11457854..11457930 552..476 250 88.3 Minus
X 23527363 X 6690323..6690396 224..297 190 83.7 Plus
2L 23513712 2L 10190847..10190998 552..401 190 75 Minus
X 23527363 X 6690458..6690510 356..408 145 84.9 Plus
3L 28103327 3L 11457467..11457545 939..861 140 78.4 Minus
Blast to na_custom.ecoli performed 2009-08-13 10:40:25
Subject Length Description Subject Range Query Range Score Percent Strand
E. 2250 E. 418..489 350..421 180 83.3 Plus
E. 2250 E. 1024..1200 956..1132 180 73.4 Plus
E.coli 19211 E.coli 946..1017 421..350 180 83.3 Minus
E.coli 19211 E.coli 235..411 1132..956 180 73.4 Minus
E.coli 15465 E.coli 10082..10153 421..350 180 83.3 Minus
E.coli 15465 E.coli 9371..9547 1132..956 180 73.4 Minus
Blast to na_te.dros performed on 2019-03-16 17:25:27 has no hits.

LP02262.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:26:30 Download gff for LP02262.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 6571848..6571932 1..85 100 -> Plus
chrX 6571998..6572129 86..217 100 -> Plus
chrX 6572470..6572670 218..418 98 -> Plus
chrX 6572740..6573544 419..1223 99 -> Plus
chrX 6573610..6574018 1224..1633 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:14:04 Download gff for LP02262.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0255-RB 1..1404 83..1486 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:58:37 Download gff for LP02262.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0255-RB 1..1404 83..1486 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:33:28 Download gff for LP02262.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0255-RB 1..1404 83..1486 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:58:30 Download gff for LP02262.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0255-RB 1..1404 83..1486 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-13 10:28:44 Download gff for LP02262.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0255-RB 59..1690 1..1633 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:58:37 Download gff for LP02262.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0255-RB 59..1690 1..1633 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:33:28 Download gff for LP02262.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0255-RB 37..1668 1..1633 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:58:30 Download gff for LP02262.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0255-RB 37..1668 1..1633 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:26:30 Download gff for LP02262.complete
Subject Subject Range Query Range Percent Splice Strand
X 6679676..6679760 1..85 100 -> Plus
X 6679826..6679957 86..217 100 -> Plus
X 6680298..6680498 218..418 100 -> Plus
X 6680568..6681372 419..1223 100 -> Plus
X 6681437..6681845 1224..1633 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:26:30 Download gff for LP02262.complete
Subject Subject Range Query Range Percent Splice Strand
X 6679676..6679760 1..85 100 -> Plus
X 6679826..6679957 86..217 100 -> Plus
X 6680298..6680498 218..418 100 -> Plus
X 6680568..6681372 419..1223 100 -> Plus
X 6681437..6681845 1224..1633 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:26:30 Download gff for LP02262.complete
Subject Subject Range Query Range Percent Splice Strand
X 6679676..6679760 1..85 100 -> Plus
X 6679826..6679957 86..217 100 -> Plus
X 6680298..6680498 218..418 100 -> Plus
X 6680568..6681372 419..1223 100 -> Plus
X 6681437..6681845 1224..1633 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:28 Download gff for LP02262.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6573709..6573793 1..85 100 -> Plus
arm_X 6573859..6573990 86..217 100 -> Plus
arm_X 6574331..6574531 218..418 100 -> Plus
arm_X 6574601..6575405 419..1223 100 -> Plus
arm_X 6575470..6575878 1224..1633 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:50:17 Download gff for LP02262.complete
Subject Subject Range Query Range Percent Splice Strand
X 6688666..6689470 419..1223 100 -> Plus
X 6689535..6689943 1224..1633 99   Plus
X 6687924..6688055 86..217 100 -> Plus
X 6687774..6687858 1..85 100 -> Plus
X 6688396..6688596 218..418 100 -> Plus

LP02262.pep Sequence

Translation from 82 to 1485

> LP02262.pep
MASQEFRVESDTFGELKVPADKYYGAQTMRSQINFPIGGATERMPKPVVQ
AMGILKKAAAEVNKEFGLDSKVSEAISKAADDVISGKLYDDHFPLVIWQT
GSGTQSNMNVNEVISNRAIELLGGKLGSKTPVHPNDHVNKSQSSNDTFPT
AIHISVALELNNNLKPAIKTLHDALRAKSEEFKDIIKIGRTHTMDAVPLT
LGQEFSGYAQQLAYAQERIDACLPRVYELALGGTAVGTGLNTRKGFAEKC
AAKIAELTSLPFVTAPNKFEALAARDAMVEVHGVLNTIAVSLMKIANDIR
FLGSGPRCGLGELSLPENEPGSSIMPGKVNPTQCESLTMLSAQVMGNQVA
VTIGGSNGHFELNVFKPLIVSNVLRSIRLLSDGSRTFTANCVNGIQANRE
NIAKIMNESLMLVTALNPHIGYDKAAKIAKTAHKNGTTLKEEAINLGYLT
EQQFNDWVRPEQMLGPK*

LP02262.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:28:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21422-PA 498 GF21422-PA 32..498 1..467 2445 97.2 Plus
Dana\GF21423-PA 505 GF21423-PA 43..505 5..467 2075 83 Plus
Dana\GF25158-PA 466 GF25158-PA 2..465 3..466 1919 75.3 Plus
Dana\GF14135-PA 2594 GF14135-PA 938..1352 46..460 1383 61.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:28:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19604-PA 495 GG19604-PA 29..495 1..467 2492 99.6 Plus
Dere\GG19605-PA 503 GG19605-PA 41..503 5..467 2044 82.1 Plus
Dere\GG13920-PA 470 GG13920-PA 8..469 5..466 1939 77.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:28:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24716-PA 496 GH24716-PA 30..496 1..467 2427 96.4 Plus
Dgri\GH24717-PA 488 GH24717-PA 26..487 5..466 2003 80.3 Plus
Dgri\GH16363-PA 475 GH16363-PA 15..474 7..466 1928 77.2 Plus
Dgri\GH16362-PA 489 GH16362-PA 24..483 7..466 1533 61.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:57:53
Subject Length Description Subject Range Query Range Score Percent Strand
Fum1-PB 467 CG4094-PB 1..467 1..467 2379 100 Plus
Fum1-PA 495 CG4094-PA 29..495 1..467 2376 99.8 Plus
Fum2-PA 503 CG4095-PA 41..503 5..467 1958 82.1 Plus
Fum3-PB 470 CG6140-PB 8..469 5..466 1854 76.7 Plus
Fum3-PA 470 CG6140-PA 8..469 5..466 1854 76.7 Plus
Fum4-PA 484 CG31874-PA 24..484 7..467 1526 62.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:28:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21814-PA 496 GI21814-PA 30..496 1..467 2430 97 Plus
Dmoj\GI21815-PA 502 GI21815-PA 39..502 4..467 1996 80.9 Plus
Dmoj\GI11555-PA 467 GI11555-PA 1..466 1..466 1875 74.1 Plus
Dmoj\GI11554-PA 485 GI11554-PA 18..480 1..464 1399 55.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:28:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24850-PA 469 GL24850-PA 9..468 7..466 1907 76.1 Plus
Dper\GL13348-PA 537 GL13348-PA 151..513 5..366 1562 79.6 Plus
Dper\GL19182-PA 2565 GL19182-PA 949..1363 46..460 1492 65.1 Plus
Dper\GL15602-PA 264 GL15602-PA 1..264 204..467 1059 77.1 Plus
Dper\GL20991-PA 174 GL20991-PA 1..174 293..467 784 83.4 Plus
Dper\GL13348-PA 537 GL13348-PA 30..141 1..112 588 97.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:28:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22866-PA 496 GA22866-PA 30..496 1..467 2453 97.6 Plus
Dpse\GA17953-PA 500 GA17953-PA 38..500 5..467 1992 79.7 Plus
Dpse\GA23530-PA 469 GA23530-PA 9..468 7..466 1907 76.1 Plus
Dpse\GA25872-PA 2547 GA25872-PA 927..1363 25..460 1493 63.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:28:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12511-PA 495 GM12511-PA 29..495 1..467 2495 99.8 Plus
Dsec\GM12512-PA 499 GM12512-PA 37..499 5..467 2114 84.7 Plus
Dsec\GM24753-PA 410 GM24753-PA 128..409 189..466 1099 72.8 Plus
Dsec\GM24753-PA 410 GM24753-PA 8..138 5..134 526 74.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:28:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22301-PA 1702 GD22301-PA 13..361 7..354 1230 63 Plus
Dsim\GD12804-PA 148 GD12804-PA 29..147 342..466 398 63.2 Plus
Dsim\GD12804-PA 148 GD12804-PA 8..48 5..45 155 68.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:28:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16987-PA 496 GJ16987-PA 30..496 1..467 2440 97.4 Plus
Dvir\GJ11233-PA 476 GJ11233-PA 11..475 2..466 1992 80.5 Plus
Dvir\GJ16988-PA 500 GJ16988-PA 38..500 5..467 1991 80.2 Plus
Dvir\GJ11232-PA 484 GJ11232-PA 24..483 7..466 1599 64.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:28:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15449-PA 500 GK15449-PA 35..500 2..467 2435 97.4 Plus
Dwil\GK15460-PA 455 GK15460-PA 1..455 13..467 1889 79.8 Plus
Dwil\GK17051-PA 455 GK17051-PA 1..450 1..462 1359 56.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:28:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16764-PA 495 GE16764-PA 29..495 1..467 2487 99.4 Plus
Dyak\GE16765-PA 500 GE16765-PA 38..500 5..467 2041 81.9 Plus
Dyak\GE20216-PA 470 GE20216-PA 8..469 5..466 1942 76.9 Plus

LP02262.hyp Sequence

Translation from 82 to 1485

> LP02262.hyp
MASQEFRVESDTFGELKVPADKYYGAQTMRSQINFPIGGATERMPKPVVQ
AMGILKKAAAEVNKEFGLDSKVSEAISKAADDVISGKLYDDHFPLVIWQT
GSGTQSNMNVNEVISNRAIELLGGKLGSKTPVHPNDHVNKSQSSNDTFPT
AIHISVALELNNNLKPAIKTLHDALRAKSEEFKDIIKIGRTHTMDAVPLT
LGQEFSGYAQQLAYAQERIDACLPRVYELALGGTAVGTGLNTRKGFAEKC
AAKIAELTSLPFVTAPNKFEALAARDAMVEVHGVLNTIAVSLMKIANDIR
FLGSGPRCGLGELSLPENEPGSSIMPGKVNPTQCESLTMLSAQVMGNQVA
VTIGGSNGHFELNVFKPLIVSNVLRSIRLLSDGSRTFTANCVNGIQANRE
NIAKIMNESLMLVTALNPHIGYDKAAKIAKTAHKNGTTLKEEAINLGYLT
EQQFNDWVRPEQMLGPK*

LP02262.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:28:49
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0255-PB 467 CG4094-PB 1..467 1..467 2379 100 Plus
l(1)G0255-PA 495 CG4094-PA 29..495 1..467 2376 99.8 Plus
CG4095-PA 503 CG4095-PA 41..503 5..467 1958 82.1 Plus
CG6140-PB 470 CG6140-PB 8..469 5..466 1854 76.7 Plus
CG6140-PA 470 CG6140-PA 8..469 5..466 1854 76.7 Plus