Clone LP02372 Report

Search the DGRC for LP02372

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:23
Well:72
Vector:pOT2
Associated Gene/TranscriptEgm-RA
Protein status:LP02372.pep: gold
Sequenced Size:2038

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9006 2003-01-01 Sim4 clustering to Release 3
CG9006 2004-10-04 Blastp of sequenced clone
Egm 2008-04-29 Release 5.5 accounting
Egm 2008-08-15 Release 5.9 accounting
Egm 2008-12-18 5.12 accounting

Clone Sequence Records

LP02372.complete Sequence

2038 bp (2038 high quality bases) assembled on 2004-10-04

GenBank Submission: BT016075

> LP02372.complete
TGCGAACCTATCGGGGCTTACCTAATTTCTTAGTAAATATGCGGCCCAAT
TTGTTTTCCGGCGCCTCGCGGCTCTTGACTTACAGCCGAAATGGAAAACT
TCTGACTCGGGGAAGAAGCACCAAGGCCACGTCCAGCAGCTTGGACTCAC
AGCACCAGGATGCGGCGACCACGGAGGGTGGAAGAGCGGAATCCGTAGAG
GAGTCCCCGGAGCAGCAGCGAAAACTACCAACCAGAGAGCCGCTGGCCAA
AAACTTCTTCATCGGAGTGGTGGACAAGGAGCTGCTGGCCTATCCGGAGG
TGATTCCACGGGATGAGATGGCCCAGCTGGAGAATTCCCTGCTGCCGCTG
AAGAACTACTTTGTGGAGCCACGTGAAACGGAGGAGACCTCACCGGAGAC
CCTCCGCCAGCTGGGACTCTATGGGCTAAATGTGTCCACAGATTACGAGG
GCAAAGGCTATGGCTGGAGTGCCAGTCTAATGGCCAGTGAGCCGGATTCA
ACGGATATCAATGTAACCCTGGGCCTGCAAACGCATCGCGTGGTCGTGGA
TCTTCTGAAAGAGGTTGGAACTCCGTTGCAACAGCAGAGGTATCTCCAGG
ACTTGGCCACTGGTAAACTGATAGGTACCGAGGCTATATATGAGATATCT
CCACCCGAGGAGGATTACTTTAACACCACGGCAGAGTTGTTTCCCGAATA
CGGAAAGTGGCAGCTCAATGGCGAAAAATCATTCGTGATCTGCACACCCG
GCGAGCGGCAGCTTTTCCTGGTTCTGGCCCAAACCCAACAGCCGAATGTT
CCGGGAGTTTTGGGACGTGGCACCACCATCTTTCTGGTTGATTCCCAGCA
GGAAGGAGTGCGCCTGGGCGAAAAGCACGCCACATTCGGTTGCCGGAAAG
CGGAAATTAGGCGTGTGCACTTCGAAGGCGTTAAGTTGGGAGAGGATCAG
GTGGTGGGCCTACCACACGATGGCAACCGCTATTCGGAGCAGCTGGTGCG
ATCCTCCCGCTTGAGGGGCAGCTTGGTGGGACTATCGCTGGCCAAGAAAC
TGCTAAACGAATTGGCCCAGTACACTGTGAACACCACTCAGTGCGGAGTA
CAACTGCAAGACCTGGAGCTCACCCGCATCCATATGTCGCGCGCGATGTG
CTCCGTTTACGCGATGGAGAGCATGCTCTACCTGACCGCCGGGTTGCTGG
ATGAGTTCCGTGCCCAGGATGTGACTCTGGAGAGTGCCATAACAAAGTAC
TTTACCCTGCGACAGGTGTACGCCATTGCCTCCCAGAATCTGGGAGTCGT
GGGACCCAAGAGTCTGCTCAGCGGTGAGACCACGGAGCTGGGACTACGAG
ATGCAGCGCAGCTGTGCACGCAAGGTGAATCCCTGGACACCTTGGGCATG
TTCATTGCCCTCACCGGATTGCAGCACGCGGGGCAAGCCATGAATACGGG
CGTGCGAAAGTCCAGAAATCCACTCTTCAATCCTGGTCACATTTTTGGTA
AATTCCTGGACAACAACAGCATCGACAATCCCAAGACCAAGATGCAGCTT
TCGGAGCACGTGCATCCCTCCCTTGAGGCGGCTGCCCAGTGCATTGAACT
GTCGGTGGCGCGTCTCCAAATGGCCGTGGAGCTGATGTTCACCAAGCACG
GCAACGCGGTGGTGGAGCGTCAAAGTGAAATGCAGCGCCTGGCGGAGGTG
GGCACCCTTATCTATGCCATGTGGGCCAGCGTGGCGAGGGCATCCCGATC
GTATTGCATTGGACTGCCGCTGGCGGATCATGAACTGCTCACGGCCACAG
CGATATGCTCGGAGGGCAGGGATCGCGTCCGCACCCTCTGCACGGAGATC
TATGGCGGTCATTTTGTGAACAACGACAACAACCTGGTGCGACTCTCCAA
GCAAGTGGCCAAGAGCAAGGGCTACTTCGCTGTTCATCCGCTGACATTTA
ACTTCTAAGCCAAGCTGGTAGTTAAGTTTATTATTGCCTTTACGATTAAA
GTGAATACTTGTTATTGATAAAAAAAAAAAAAAAAAAA

LP02372.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:57:18
Subject Length Description Subject Range Query Range Score Percent Strand
Egm.a 2746 Egm.a 79..2099 1..2021 10105 100 Plus
Egm-RA 2246 Egm-RA 174..2194 1..2021 10105 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:33:12
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 7505258..7506365 1108..1 5480 99.6 Minus
chr2R 21145070 chr2R 7504225..7504811 2019..1433 2935 100 Minus
chr2R 21145070 chr2R 7504872..7505196 1433..1109 1625 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:47:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:33:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11617902..11619009 1108..1 5540 100 Minus
2R 25286936 2R 11616867..11617455 2021..1433 2945 100 Minus
2R 25286936 2R 11617516..11617840 1433..1109 1625 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:46:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 11619101..11620208 1108..1 5540 100 Minus
2R 25260384 2R 11618066..11618654 2021..1433 2945 100 Minus
2R 25260384 2R 11618715..11619039 1433..1109 1625 100 Minus
Blast to na_te.dros performed on 2019-03-16 04:33:10 has no hits.

LP02372.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:34:01 Download gff for LP02372.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 7504225..7504810 1434..2019 100 <- Minus
chr2R 7504872..7505196 1109..1433 100 <- Minus
chr2R 7505258..7506365 1..1108 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:33:50 Download gff for LP02372.complete
Subject Subject Range Query Range Percent Splice Strand
Egm-RA 1..1920 39..1958 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:31:06 Download gff for LP02372.complete
Subject Subject Range Query Range Percent Splice Strand
Egm-RA 1..1920 39..1958 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:33:46 Download gff for LP02372.complete
Subject Subject Range Query Range Percent Splice Strand
Egm-RA 1..1920 39..1958 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:14:57 Download gff for LP02372.complete
Subject Subject Range Query Range Percent Splice Strand
Egm-RA 1..1920 39..1958 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:43:29 Download gff for LP02372.complete
Subject Subject Range Query Range Percent Splice Strand
Egm-RA 1..1920 39..1958 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:35:44 Download gff for LP02372.complete
Subject Subject Range Query Range Percent Splice Strand
Egm-RA 2..2020 1..2019 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:31:06 Download gff for LP02372.complete
Subject Subject Range Query Range Percent Splice Strand
Egm-RA 2..2020 1..2019 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:33:46 Download gff for LP02372.complete
Subject Subject Range Query Range Percent Splice Strand
Egm-RA 15..2033 1..2019 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:14:57 Download gff for LP02372.complete
Subject Subject Range Query Range Percent Splice Strand
Egm-RA 2..2020 1..2019 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:43:29 Download gff for LP02372.complete
Subject Subject Range Query Range Percent Splice Strand
Egm-RA 15..2033 1..2019 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:34:01 Download gff for LP02372.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11616869..11617454 1434..2019 100 <- Minus
2R 11617516..11617840 1109..1433 100 <- Minus
2R 11617902..11619009 1..1108 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:34:01 Download gff for LP02372.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11616869..11617454 1434..2019 100 <- Minus
2R 11617516..11617840 1109..1433 100 <- Minus
2R 11617902..11619009 1..1108 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:34:01 Download gff for LP02372.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11616869..11617454 1434..2019 100 <- Minus
2R 11617516..11617840 1109..1433 100 <- Minus
2R 11617902..11619009 1..1108 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:33:46 Download gff for LP02372.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7504374..7504959 1434..2019 100 <- Minus
arm_2R 7505021..7505345 1109..1433 100 <- Minus
arm_2R 7505407..7506514 1..1108 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:51:50 Download gff for LP02372.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11618068..11618653 1434..2019 100 <- Minus
2R 11618715..11619039 1109..1433 100 <- Minus
2R 11619101..11620208 1..1108 100   Minus

LP02372.hyp Sequence

Translation from 2 to 1957

> LP02372.hyp
RTYRGLPNFLVNMRPNLFSGASRLLTYSRNGKLLTRGRSTKATSSSLDSQ
HQDAATTEGGRAESVEESPEQQRKLPTREPLAKNFFIGVVDKELLAYPEV
IPRDEMAQLENSLLPLKNYFVEPRETEETSPETLRQLGLYGLNVSTDYEG
KGYGWSASLMASEPDSTDINVTLGLQTHRVVVDLLKEVGTPLQQQRYLQD
LATGKLIGTEAIYEISPPEEDYFNTTAELFPEYGKWQLNGEKSFVICTPG
ERQLFLVLAQTQQPNVPGVLGRGTTIFLVDSQQEGVRLGEKHATFGCRKA
EIRRVHFEGVKLGEDQVVGLPHDGNRYSEQLVRSSRLRGSLVGLSLAKKL
LNELAQYTVNTTQCGVQLQDLELTRIHMSRAMCSVYAMESMLYLTAGLLD
EFRAQDVTLESAITKYFTLRQVYAIASQNLGVVGPKSLLSGETTELGLRD
AAQLCTQGESLDTLGMFIALTGLQHAGQAMNTGVRKSRNPLFNPGHIFGK
FLDNNSIDNPKTKMQLSEHVHPSLEAAAQCIELSVARLQMAVELMFTKHG
NAVVERQSEMQRLAEVGTLIYAMWASVARASRSYCIGLPLADHELLTATA
ICSEGRDRVRTLCTEIYGGHFVNNDNNLVRLSKQVAKSKGYFAVHPLTFN
F*

LP02372.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:00:58
Subject Length Description Subject Range Query Range Score Percent Strand
Egm-PA 639 CG9006-PA 1..639 13..651 3267 100 Plus
CG7461-PC 627 CG7461-PC 32..617 67..640 396 25 Plus
CG7461-PB 627 CG7461-PB 32..617 67..640 396 25 Plus
CG4860-PA 415 CG4860-PA 77..387 134..451 161 22.6 Plus

LP02372.pep Sequence

Translation from 38 to 1957

> LP02372.pep
MRPNLFSGASRLLTYSRNGKLLTRGRSTKATSSSLDSQHQDAATTEGGRA
ESVEESPEQQRKLPTREPLAKNFFIGVVDKELLAYPEVIPRDEMAQLENS
LLPLKNYFVEPRETEETSPETLRQLGLYGLNVSTDYEGKGYGWSASLMAS
EPDSTDINVTLGLQTHRVVVDLLKEVGTPLQQQRYLQDLATGKLIGTEAI
YEISPPEEDYFNTTAELFPEYGKWQLNGEKSFVICTPGERQLFLVLAQTQ
QPNVPGVLGRGTTIFLVDSQQEGVRLGEKHATFGCRKAEIRRVHFEGVKL
GEDQVVGLPHDGNRYSEQLVRSSRLRGSLVGLSLAKKLLNELAQYTVNTT
QCGVQLQDLELTRIHMSRAMCSVYAMESMLYLTAGLLDEFRAQDVTLESA
ITKYFTLRQVYAIASQNLGVVGPKSLLSGETTELGLRDAAQLCTQGESLD
TLGMFIALTGLQHAGQAMNTGVRKSRNPLFNPGHIFGKFLDNNSIDNPKT
KMQLSEHVHPSLEAAAQCIELSVARLQMAVELMFTKHGNAVVERQSEMQR
LAEVGTLIYAMWASVARASRSYCIGLPLADHELLTATAICSEGRDRVRTL
CTEIYGGHFVNNDNNLVRLSKQVAKSKGYFAVHPLTFNF*

LP02372.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:51:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12390-PA 641 GF12390-PA 1..641 1..639 2819 81.6 Plus
Dana\GF23652-PA 527 GF23652-PA 2..486 115..597 331 26.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:51:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22640-PA 638 GG22640-PA 1..638 1..639 3227 94.4 Plus
Dere\GG21959-PA 627 GG21959-PA 32..586 55..597 395 26 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:51:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20496-PA 638 GH20496-PA 1..638 1..639 2107 63.7 Plus
Dgri\GH15160-PA 578 GH15160-PA 6..578 77..638 371 23.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:47:55
Subject Length Description Subject Range Query Range Score Percent Strand
Egm-PA 639 CG9006-PA 1..639 1..639 3267 100 Plus
CG7461-PC 627 CG7461-PC 32..617 55..628 396 25 Plus
CG7461-PB 627 CG7461-PB 32..617 55..628 396 25 Plus
CG4860-PA 415 CG4860-PA 77..387 122..439 161 22.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:51:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21039-PA 640 GI21039-PA 1..640 1..639 2152 64.9 Plus
Dmoj\GI12099-PA 581 GI12099-PA 3..540 72..597 346 24.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:51:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10675-PA 608 GL10675-PA 30..608 64..639 2428 77.4 Plus
Dper\GL14800-PA 580 GL14800-PA 1..539 69..596 338 23.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:51:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21471-PA 648 GA21471-PA 2..648 1..639 2627 74.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:51:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20419-PA 639 GM20419-PA 1..639 1..639 3332 97.2 Plus
Dsec\GM21947-PA 627 GM21947-PA 32..586 55..597 393 25.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:51:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25894-PA 640 GD25894-PA 1..640 1..639 3191 93.8 Plus
Dsim\GD11444-PA 627 GD11444-PA 32..586 55..597 387 25.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:51:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21966-PA 640 GJ21966-PA 1..640 1..639 2216 67.2 Plus
Dvir\GJ13373-PA 581 GJ13373-PA 3..571 72..628 356 23.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:51:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22223-PA 647 GK22223-PA 1..647 1..639 2354 67.9 Plus
Dwil\GK24068-PA 413 GK24068-PA 1..321 262..583 264 25.2 Plus
Dwil\GK11564-PA 384 GK11564-PA 45..357 122..439 168 23.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:51:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13511-PA 639 GE13511-PA 1..639 1..639 3239 94.5 Plus
Dyak\GE12038-PA 627 GE12038-PA 32..586 55..597 388 25.8 Plus