Clone LP02515 Report

Search the DGRC for LP02515

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:25
Well:15
Vector:pOT2
Associated Gene/TranscriptCG5068-RA
Protein status:LP02515.pep: gold
Preliminary Size:1667
Sequenced Size:1601

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5068 2001-01-01 Release 2 assignment
CG5068 2001-10-10 Blastp of sequenced clone
CG5068 2003-01-01 Sim4 clustering to Release 3
CG5068 2008-04-29 Release 5.5 accounting
CG5068 2008-08-15 Release 5.9 accounting
CG5068 2008-12-18 5.12 accounting

Clone Sequence Records

LP02515.complete Sequence

1601 bp (1601 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061540

> LP02515.complete
CGATTACGGTCACACTGCAATACTTCTTCGTTGAATTGGAACTATTTTTT
TGTTTTCGAAAACGGATAATTGCGAGCAACGACTGTGTGAATAACCACTT
GCACCTGCACCGTAGGAGCACCACCTGTTGACCCCACAGCGAAGACAATC
GGATCAATGTCGAGTTTACAGCGCACGATGTTGAAGGGCAAGCTGCCACC
CACAATTCCTGGCGGGCGCATTGGCAGAGCGGACTCGTTCAAGAAGTCGC
GCATTCGCGACTACAAGCCGGGCATGTGGAACGAATTCTTTGCGGAGAAG
GAGGACGTCACGGTGGATGAGCAACGCACCTTCCGCATCTATCGCACCAA
GCAACCGGAGAAGCCGGGTCCAGTTCTCCTTCTGCTCCACGGCGGTGGCT
ACTCTGCCCTCACCTGGGCGCACTTTTGTTCTGAGGTGACCAGCATGATC
CACTGCCAGTGCCTGTGCATCGATATGCGAGGTCATGGGGACAGCAAGGT
GGACGACGAGGACGATCTCTCCGCTGATACGTTGGCTAAGGACATCGGTG
ACTTAATCCTGAAGCTCTATCCTGAAGAAGTGCCGCAGCTTTTTGTGGTT
GGCCACTCGATGGGCGGCGCCATCGCCGTCCACTTTGCCCACATGGCTCT
GGTGCCCAATTTGATTGGAATAACCGTCATCGATGTTGTGGAGGGCACAG
CCATGGAGGCACTAGCCAGCATGCAGAGCTTTCTGCGCTCCCGTCCAAAG
TATTTCCAGAGTATTCCGAATGCTATCGAGTGGTGCATCCGAAGCGGCCA
AGTGCGCAATGTGGACAGCGCCAAAGTGTCCATGCCGGGACAGATAATAA
ATTGTACAACGAACAAACTGGCAACGAATGATCTGCCATTACCAGATGAT
GTATTGGAGGAGGCCCACCACAACAGTATGTTTCCCAATCCGTTTAGCAT
TTCGGAGGATGAAGAATCGTCACCGCCGGGCGATGACGCCGCCGATGGCT
CCTCAGAAAGTGCCGCAGCTGGCGCGGATTTCAAGAAGCCCAACACGACC
AAATCGACAACCGAAGCGGCCAAAAATTACACCTGGCGCATTGATCTGTC
CAAGTCGGAGAAGTACTGGGTGGGCTGGTTTTCGGGGCTGAGCGATAAGT
TCCTTAACTTGCGCCTGCCCAAGCAACTACTCCTCGCCAGCATCGATGGA
CTGGACCGCACCCTGACTGTTGGCCAGATGCAGGGTCGCTTCCAGATGCA
GGTCTTGGCCCGCTGCGGTCACGCCGTGCACGAGGACCGTCCACACGAGG
TGGCTGAGGTGATTAGCGGCTACTTGATCCGGAATCGGTTTGCAGAAGCA
GCCAGCGAATTTCGTTGCCACATGCCGTCGTGCTAAACACAACCACCCCC
TGAATCCGAGGTTGAGCACAAACTGAGGTCACAAAAGTCTATTTTTGAAT
GGAGGTGCATTACTCTTTGAACTTACAGATGCGTGCATATATATATATAT
ATACAAAATGTAGTGCGTAGGTCCAGATATATACAGCCGTATATTCTATA
TACACATAAACTAATAATCCAGTAAAAAAAAAAAAAAAAAAAAAAAAAAA
A

LP02515.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:03:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG5068-RA 1896 CG5068-RA 71..1645 1..1575 7875 100 Plus
CG5068.a 1601 CG5068.a 259..1601 231..1573 6715 100 Plus
CG5068.a 1601 CG5068.a 18..248 1..231 1155 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:33:20
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 8980409..8980905 1077..1573 2440 99.4 Plus
chr3L 24539361 chr3L 8979770..8980078 540..848 1545 100 Plus
chr3L 24539361 chr3L 8978767..8978997 1..231 1110 98.7 Plus
chr3L 24539361 chr3L 8979065..8979263 231..429 980 99.5 Plus
chr3L 24539361 chr3L 8980138..8980350 853..1080 865 93 Plus
chr3L 24539361 chr3L 8979323..8979433 430..540 555 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:47:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:33:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8988386..8988884 1077..1575 2495 100 Plus
3L 28110227 3L 8987732..8988043 540..851 1560 100 Plus
3L 28110227 3L 8986729..8986959 1..231 1155 100 Plus
3L 28110227 3L 8988099..8988327 852..1080 1130 99.6 Plus
3L 28110227 3L 8987027..8987225 231..429 995 100 Plus
3L 28110227 3L 8987285..8987395 430..540 555 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:28:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 8981486..8981984 1077..1575 2495 100 Plus
3L 28103327 3L 8980832..8981143 540..851 1560 100 Plus
3L 28103327 3L 8979829..8980059 1..231 1155 100 Plus
3L 28103327 3L 8981199..8981427 852..1080 1130 99.5 Plus
3L 28103327 3L 8980127..8980325 231..429 995 100 Plus
3L 28103327 3L 8980385..8980495 430..540 555 100 Plus
Blast to na_te.dros performed on 2019-03-16 04:33:18 has no hits.

LP02515.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:34:05 Download gff for LP02515.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 8978767..8978996 1..230 98 -> Plus
chr3L 8979065..8979263 231..429 99 -> Plus
chr3L 8979323..8979432 430..539 100 -> Plus
chr3L 8979770..8980081 540..851 99 -> Plus
chr3L 8980137..8980346 852..1076 92 -> Plus
chr3L 8980409..8980905 1077..1573 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:33:51 Download gff for LP02515.complete
Subject Subject Range Query Range Percent Splice Strand
CG5068-RA 1..1230 157..1386 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:38:47 Download gff for LP02515.complete
Subject Subject Range Query Range Percent Splice Strand
CG5068-RA 1..1230 157..1386 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:33:58 Download gff for LP02515.complete
Subject Subject Range Query Range Percent Splice Strand
CG5068-RA 1..1230 157..1386 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:07:38 Download gff for LP02515.complete
Subject Subject Range Query Range Percent Splice Strand
CG5068-RA 1..1230 157..1386 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:43:37 Download gff for LP02515.complete
Subject Subject Range Query Range Percent Splice Strand
CG5068-RA 1..1230 157..1386 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:19:55 Download gff for LP02515.complete
Subject Subject Range Query Range Percent Splice Strand
CG5068-RA 18..1588 1..1571 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:38:46 Download gff for LP02515.complete
Subject Subject Range Query Range Percent Splice Strand
CG5068-RA 18..1588 1..1571 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:33:58 Download gff for LP02515.complete
Subject Subject Range Query Range Percent Splice Strand
CG5068-RA 20..1592 1..1573 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:07:38 Download gff for LP02515.complete
Subject Subject Range Query Range Percent Splice Strand
CG5068-RA 18..1588 1..1571 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:43:37 Download gff for LP02515.complete
Subject Subject Range Query Range Percent Splice Strand
CG5068-RA 20..1592 1..1573 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:34:05 Download gff for LP02515.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8986729..8986958 1..230 100 -> Plus
3L 8987027..8987225 231..429 100 -> Plus
3L 8987285..8987394 430..539 100 -> Plus
3L 8987732..8988043 540..851 100 -> Plus
3L 8988099..8988323 852..1076 100 -> Plus
3L 8988386..8988882 1077..1573 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:34:05 Download gff for LP02515.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8986729..8986958 1..230 100 -> Plus
3L 8987027..8987225 231..429 100 -> Plus
3L 8987285..8987394 430..539 100 -> Plus
3L 8987732..8988043 540..851 100 -> Plus
3L 8988099..8988323 852..1076 100 -> Plus
3L 8988386..8988882 1077..1573 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:34:05 Download gff for LP02515.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8986729..8986958 1..230 100 -> Plus
3L 8987027..8987225 231..429 100 -> Plus
3L 8987285..8987394 430..539 100 -> Plus
3L 8987732..8988043 540..851 100 -> Plus
3L 8988099..8988323 852..1076 100 -> Plus
3L 8988386..8988882 1077..1573 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:33:58 Download gff for LP02515.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8980385..8980494 430..539 100 -> Plus
arm_3L 8980832..8981143 540..851 100 -> Plus
arm_3L 8979829..8980058 1..230 100 -> Plus
arm_3L 8980127..8980325 231..429 100 -> Plus
arm_3L 8981199..8981423 852..1076 100 -> Plus
arm_3L 8981486..8981982 1077..1573 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:43:47 Download gff for LP02515.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8980385..8980494 430..539 100 -> Plus
3L 8979829..8980058 1..230 100 -> Plus
3L 8980127..8980325 231..429 100 -> Plus
3L 8980832..8981143 540..851 100 -> Plus
3L 8981199..8981423 852..1076 100 -> Plus
3L 8981486..8981982 1077..1573 100   Plus

LP02515.pep Sequence

Translation from 156 to 1385

> LP02515.pep
MSSLQRTMLKGKLPPTIPGGRIGRADSFKKSRIRDYKPGMWNEFFAEKED
VTVDEQRTFRIYRTKQPEKPGPVLLLLHGGGYSALTWAHFCSEVTSMIHC
QCLCIDMRGHGDSKVDDEDDLSADTLAKDIGDLILKLYPEEVPQLFVVGH
SMGGAIAVHFAHMALVPNLIGITVIDVVEGTAMEALASMQSFLRSRPKYF
QSIPNAIEWCIRSGQVRNVDSAKVSMPGQIINCTTNKLATNDLPLPDDVL
EEAHHNSMFPNPFSISEDEESSPPGDDAADGSSESAAAGADFKKPNTTKS
TTEAAKNYTWRIDLSKSEKYWVGWFSGLSDKFLNLRLPKQLLLASIDGLD
RTLTVGQMQGRFQMQVLARCGHAVHEDRPHEVAEVISGYLIRNRFAEAAS
EFRCHMPSC*

LP02515.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:43:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24371-PA 408 GF24371-PA 1..408 1..409 2097 94.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:43:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14366-PA 401 GG14366-PA 1..401 8..409 2150 99.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:43:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16538-PA 401 GH16538-PA 1..401 1..409 1930 88.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:14:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG5068-PB 409 CG5068-PB 1..409 1..409 2159 100 Plus
CG5068-PA 409 CG5068-PA 1..409 1..409 2159 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:43:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13827-PA 401 GI13827-PA 1..401 1..409 1984 88.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:43:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15030-PA 408 GL15030-PA 1..408 1..409 2086 93.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:43:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18635-PA 408 GA18635-PA 1..408 1..409 2086 93.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:43:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25110-PA 409 GM25110-PA 1..409 1..409 2207 99.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:43:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14146-PA 402 GD14146-PA 1..402 8..409 2171 99.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:43:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11693-PA 401 GJ11693-PA 1..401 1..409 1947 89.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:43:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12350-PA 411 GK12350-PA 1..411 1..409 2008 90.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:43:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20797-PA 409 GE20797-PA 1..409 1..409 2199 99.3 Plus

LP02515.hyp Sequence

Translation from 156 to 1385

> LP02515.hyp
MSSLQRTMLKGKLPPTIPGGRIGRADSFKKSRIRDYKPGMWNEFFAEKED
VTVDEQRTFRIYRTKQPEKPGPVLLLLHGGGYSALTWAHFCSEVTSMIHC
QCLCIDMRGHGDSKVDDEDDLSADTLAKDIGDLILKLYPEEVPQLFVVGH
SMGGAIAVHFAHMALVPNLIGITVIDVVEGTAMEALASMQSFLRSRPKYF
QSIPNAIEWCIRSGQVRNVDSAKVSMPGQIINCTTNKLATNDLPLPDDVL
EEAHHNSMFPNPFSISEDEESSPPGDDAADGSSESAAAGADFKKPNTTKS
TTEAAKNYTWRIDLSKSEKYWVGWFSGLSDKFLNLRLPKQLLLASIDGLD
RTLTVGQMQGRFQMQVLARCGHAVHEDRPHEVAEVISGYLIRNRFAEAAS
EFRCHMPSC*

LP02515.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG5068-PB 409 CG5068-PB 1..409 1..409 2159 100 Plus
CG5068-PA 409 CG5068-PA 1..409 1..409 2159 100 Plus