Clone LP02557 Report

Search the DGRC for LP02557

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:25
Well:57
Vector:pOT2
Associated Gene/TranscriptCG32631-RA
Protein status:LP02557.pep: gold
Preliminary Size:1437
Sequenced Size:1306

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1733 2001-01-01 Release 2 assignment
CG32631 2001-09-19 Blastp of sequenced clone
CG32631 2003-01-01 Sim4 clustering to Release 3
CG32631 2008-04-29 Release 5.5 accounting
CG32631 2008-08-15 Release 5.9 accounting
CG32631 2008-12-18 5.12 accounting

Clone Sequence Records

LP02557.complete Sequence

1306 bp (1306 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058736

> LP02557.complete
CGAAGTCTGATAAAGAACAATCCTTACAAAATACAAAAAAATATATATAT
TTAAAAAATACAATTGAGCAACCAAACATGGCCAACATTCTAAGTTTTAC
CATCTTTATGGCTGCCATTGCTATTGGACTGGCTTTAGCCACAACAACGA
CAGCAAGTACAAGGACACCCATGCCCACTTCCACTGAAAAATCCATGGAA
AAGGACGATCCCATGGAGTCCTTGGAACGCCGTGACAAACGCCAATTGAC
CGCCAATGGTGGCCAGAGCAGCCTGGCTGGTTCCAGCGGCAACTATCCCG
TTTTCTTCGATGGCCTTAATGTGAATCCCCCGCTGCAGCCACTGCCGCCA
CTGCAGCAACTTCAGCCTCTGCAGCCATTGCAGCCGATTACGGTGGTGAC
TCCTGTGGCCTCCAGTTCGAATGCCCAGAGCCAGCAGCCGCAGTCCGGCT
GGCTGCCTCAGTTTAGCCAGAATCTTCCACTTATCGGAACCTGGGTGGGT
GGCCTGCCCAATTTGATCAACGGCCTGGGACTCGGTTCGCTAAACGGCGG
CTTCGGCACTCTGGGCGGCCTGAATCTGGGCAACCTGGGACTGGGTGCAG
TGGCGCCGGTGGCCGCGGTGCCGGGCCAACTGCTCGGCTCGTCACCCAAT
CCCCAGACCACATGCCCACTCACCCAGAAGCTCAACTGCCGCTGTGAGCC
GCTCGTTCAGCTGCCGGGCCTGAAGCCCAGTTCCAATCCACTGAGGACGC
AGCTGGTGCAGATCATGCGGCAGAATGCGCGGAAGAACGAGGACGGTTCG
CAGGAGGTGCGCGTAATCCTGAGCAGCGGACATGTGATCTACCAGCGGAC
GGCCAAGGATCGCGGCCAGAGTGGCTACCTTGCCATGAGAATTCAGTCGG
GCAGGTACTTCAACATCTACTACAGTGTCAACGAGAAGGAGTACACGGTG
CGGGCGGATGTCAAGGACACGCCACCCACCTCCGATTTTGACGACGAGCT
GAGTGGTCAGTTCTAAAAATTGGTCAAAGGGATTTCCCTTTACTTACCTA
CAGTTTTTTTTTCTATACTTAATACTTAACTAGCCATTTTTTATATGAAA
TGCACTTAAACATATGTATTTGAATAAGCATTTAAACATATTTATGCTTA
TATGTTAAGCGTGCCCGATTTGAACCAAGCCGCCGAAATTCTTCGTAAAC
TCCATTAATCCCTTTTTTATTCGCAACTTTTTTTTGAACTTAAACAACTA
CAAACTAGCTGCGAAAGAAATAAACTACAATGAAACACAAAAAAAAAAAA
AAAAAA

LP02557.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:16:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG32631-RA 1389 CG32631-RA 1..1290 1..1289 6410 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:17:42
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 13447565..13448606 248..1288 5145 99.8 Plus
chrX 22417052 chrX 13447212..13447459 1..248 1240 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:47:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:17:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13556825..13557867 248..1289 5165 99.9 Plus
X 23542271 X 13556472..13556719 1..248 1240 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:40:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 13564923..13565965 248..1289 5175 99.9 Plus
X 23527363 X 13564570..13564817 1..248 1240 100 Plus
Blast to na_te.dros performed on 2019-03-15 19:17:40 has no hits.

LP02557.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:18:26 Download gff for LP02557.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 13447566..13447649 249..332 100 == Plus
chrX 13447703..13448606 386..1288 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:33:53 Download gff for LP02557.complete
Subject Subject Range Query Range Percent Splice Strand
CG32631-RA 1..939 78..1016 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:58:31 Download gff for LP02557.complete
Subject Subject Range Query Range Percent Splice Strand
CG32631-RA 1..939 78..1016 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:47:46 Download gff for LP02557.complete
Subject Subject Range Query Range Percent Splice Strand
CG32631-RA 1..939 78..1016 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:28:09 Download gff for LP02557.complete
Subject Subject Range Query Range Percent Splice Strand
CG32631-RA 1..939 78..1016 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:15:05 Download gff for LP02557.complete
Subject Subject Range Query Range Percent Splice Strand
CG32631-RA 1..939 78..1016 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:45:20 Download gff for LP02557.complete
Subject Subject Range Query Range Percent Splice Strand
CG32631-RA 1..1289 1..1288 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:58:31 Download gff for LP02557.complete
Subject Subject Range Query Range Percent Splice Strand
CG32631-RA 1..1289 1..1288 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:47:46 Download gff for LP02557.complete
Subject Subject Range Query Range Percent Splice Strand
CG32631-RA 1..1289 1..1288 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:28:10 Download gff for LP02557.complete
Subject Subject Range Query Range Percent Splice Strand
CG32631-RA 1..1289 1..1288 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:15:05 Download gff for LP02557.complete
Subject Subject Range Query Range Percent Splice Strand
CG32631-RA 1..1289 1..1288 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:18:26 Download gff for LP02557.complete
Subject Subject Range Query Range Percent Splice Strand
X 13556472..13556719 1..248 100 -> Plus
X 13556826..13557866 249..1288 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:18:26 Download gff for LP02557.complete
Subject Subject Range Query Range Percent Splice Strand
X 13556472..13556719 1..248 100 -> Plus
X 13556826..13557866 249..1288 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:18:26 Download gff for LP02557.complete
Subject Subject Range Query Range Percent Splice Strand
X 13556472..13556719 1..248 100 -> Plus
X 13556826..13557866 249..1288 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:47:46 Download gff for LP02557.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13450505..13450752 1..248 100 -> Plus
arm_X 13450859..13451899 249..1288 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:05:08 Download gff for LP02557.complete
Subject Subject Range Query Range Percent Splice Strand
X 13564570..13564817 1..248 100 -> Plus
X 13564924..13565964 249..1288 99   Plus

LP02557.hyp Sequence

Translation from 2 to 1015

> LP02557.hyp
KSDKEQSLQNTKKYIYLKNTIEQPNMANILSFTIFMAAIAIGLALATTTT
ASTRTPMPTSTEKSMEKDDPMESLERRDKRQLTANGGQSSLAGSSGNYPV
FFDGLNVNPPLQPLPPLQQLQPLQPLQPITVVTPVASSSNAQSQQPQSGW
LPQFSQNLPLIGTWVGGLPNLINGLGLGSLNGGFGTLGGLNLGNLGLGAV
APVAAVPGQLLGSSPNPQTTCPLTQKLNCRCEPLVQLPGLKPSSNPLRTQ
LVQIMRQNARKNEDGSQEVRVILSSGHVIYQRTAKDRGQSGYLAMRIQSG
RYFNIYYSVNEKEYTVRADVKDTPPTSDFDDELSGQF*

LP02557.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:06:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG32631-PA 312 CG32631-PA 1..312 26..337 1612 100 Plus

LP02557.pep Sequence

Translation from 77 to 1015

> LP02557.pep
MANILSFTIFMAAIAIGLALATTTTASTRTPMPTSTEKSMEKDDPMESLE
RRDKRQLTANGGQSSLAGSSGNYPVFFDGLNVNPPLQPLPPLQQLQPLQP
LQPITVVTPVASSSNAQSQQPQSGWLPQFSQNLPLIGTWVGGLPNLINGL
GLGSLNGGFGTLGGLNLGNLGLGAVAPVAAVPGQLLGSSPNPQTTCPLTQ
KLNCRCEPLVQLPGLKPSSNPLRTQLVQIMRQNARKNEDGSQEVRVILSS
GHVIYQRTAKDRGQSGYLAMRIQSGRYFNIYYSVNEKEYTVRADVKDTPP
TSDFDDELSGQF*

LP02557.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:14:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22574-PA 322 GF22574-PA 11..322 9..312 821 68.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:14:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17789-PA 312 GG17789-PA 1..312 1..312 1156 88.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:14:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12499-PA 271 GH12499-PA 30..266 50..305 473 47.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:36:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG32631-PA 312 CG32631-PA 1..312 1..312 1612 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:14:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14851-PA 352 GI14851-PA 50..249 50..288 321 41.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:14:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20238-PA 337 GL20238-PA 1..337 1..312 693 60.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:14:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17031-PA 335 GA17031-PA 1..335 1..312 700 61 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:14:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17615-PA 316 GM17615-PA 1..316 1..312 1158 91.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:14:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24808-PA 318 GD24808-PA 1..318 1..312 1150 92.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:14:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19512-PA 263 GJ19512-PA 35..261 50..305 467 43.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:14:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20086-PA 342 GK20086-PA 45..341 47..311 537 49 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:14:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17085-PA 321 GE17085-PA 1..321 1..312 1133 86 Plus