Clone LP02603 Report

Search the DGRC for LP02603

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:26
Well:3
Vector:pOT2
Associated Gene/TranscriptCG15818-RA
Protein status:LP02603.pep: gold
Preliminary Size:1416
Sequenced Size:1372

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15818 2001-01-01 Release 2 assignment
CG15818 2002-04-09 Blastp of sequenced clone
CG15818 2003-01-01 Sim4 clustering to Release 3
CG15818 2008-04-29 Release 5.5 accounting
CG15818 2008-08-15 Release 5.9 accounting
CG15818 2008-12-18 5.12 accounting

Clone Sequence Records

LP02603.complete Sequence

1372 bp (1372 high quality bases) assembled on 2002-04-09

GenBank Submission: AY095193

> LP02603.complete
AACCTCAGTGGTTGTCCAAAATGTTTAGCTCTACGAGAATTATTTTGTGC
GCATTTCTATTGCTGTATCCTTACGGATCCCTGATAGAAGCCCAGGAGGG
CAGGCGCTATGTGTGTCTATTATCAGATCCTCCCAATCAGTGCAGTGAAT
ATTGCGTATCCGCACTGCAGCCGGTCATCGATCACCTTTCGAAGGAGCAA
CAGGACTGGGGAGCCTGCGAGGTGAAACTTAATGGAAGCGTCGCGAAACT
GGATAAGATCGAAGACCAGTTGACGGCGACACAAATCCAAATAGAAGCCC
AGCAAGCATTCCTTGTGAACAACATTTCGAAGGCAATCAAAACCGAGGAC
CTTGAGCAAAAACTAAAGGATATCGAAGGCAATCAGACAGCGCTGAGTAA
TCAGTTGAAAGATGGACAGAAGAGGACGGAAAACCAGTTGACAGCCATCC
AGAAGACTCTATCCGATATCGAAAGGAAACTCGTGCTGCAGAGATATCAA
CAGATAGGATCGAGATATTTCTACATCGAACACAACTTACAGGTGAACTG
GAGGACCGCCGAGCAGAGGTGCATTGAAATGGGCGGCCACCTCGCAGCAT
TCCAAAATGCCGAGGAATACAACGCCATAGTGGGCCAATTGAACAAGGCG
AACTACTGGCTGGGTGTCAACGATCTGGCCAAGCAGGGCGAGTTTATATC
CTTGGCCTCCGGCAAACGAGCTACCTACTTCAAGTGGCGCAAAAATGAAC
CCAAATACAATAATCCTACCCAGCACTGCGCCTACGTTTTTGGGCACGAA
AACATTATGATCGTTCTGTCCTGTACCACTGACGTTATGCATTTCATTTG
CCAATCAGACAGTGATGTTTAGTTTTAAAGTATCAACACATGTATGAATG
AATATTACAACAAAACCACAAATACTATAATTCACTTTACTGCATTTGAT
GCAAAAATTGATGGGAACATTTAATAACGCTTTTAGCAATAATTTTTCTT
TGTGAGAGGGTTTAAGGGCAATTTTTTTTGACAACAAGTGATTGCCACAG
ATAGGAAATTATTTCGTTTCAAATTGTCAAAAAAGTCGACATGGCGCCGT
AAATAAATTGGCTGAAATGAGTAATAGGCTTAAGAGATTGCTGTTATCGA
ATTTATTTTATTTGTTTTTCTGGTTTTGGTTCCCCGCACGTCGTAAATTA
AGATTGATTCCTCGTTAAGATTATTAAATTTATCGTACTCGACAAGCACT
CTTTATAAGCAACAAATGAATAAAGAAATTTTCGACTTTAATCACAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAA

LP02603.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:15:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG15818-RA 1251 CG15818-RA 2..1251 1..1250 6250 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:34:06
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 7409956..7411250 1..1295 6385 99.5 Plus
chr2L 23010047 chr2L 7398587..7398702 114..229 220 79.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:47:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:34:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7410935..7412234 1..1300 6500 100 Plus
2L 23513712 2L 7399552..7399667 114..229 220 79.3 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:45:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7410935..7412234 1..1300 6500 100 Plus
2L 23513712 2L 7399552..7399667 114..229 220 79.3 Plus
Blast to na_te.dros performed 2019-03-16 11:34:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dtei\I-element 5386 Dtei\I-element DTEII 5386bp 4809..4889 1204..1122 131 63.9 Minus

LP02603.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:35:22 Download gff for LP02603.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 7409956..7411250 1..1295 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:33:56 Download gff for LP02603.complete
Subject Subject Range Query Range Percent Splice Strand
CG15818-RA 1..852 21..872 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:08:24 Download gff for LP02603.complete
Subject Subject Range Query Range Percent Splice Strand
CG15818-RA 1..852 21..872 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:59:11 Download gff for LP02603.complete
Subject Subject Range Query Range Percent Splice Strand
CG15818-RA 1..852 21..872 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:55:48 Download gff for LP02603.complete
Subject Subject Range Query Range Percent Splice Strand
CG15818-RA 1..852 21..872 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:20:30 Download gff for LP02603.complete
Subject Subject Range Query Range Percent Splice Strand
CG15818-RA 1..852 21..872 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:44:24 Download gff for LP02603.complete
Subject Subject Range Query Range Percent Splice Strand
CG15818-RA 2..1251 1..1250 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:08:24 Download gff for LP02603.complete
Subject Subject Range Query Range Percent Splice Strand
CG15818-RA 2..1296 1..1295 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:59:11 Download gff for LP02603.complete
Subject Subject Range Query Range Percent Splice Strand
CG15818-RA 27..1321 1..1295 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:55:49 Download gff for LP02603.complete
Subject Subject Range Query Range Percent Splice Strand
CG15818-RA 2..1251 1..1250 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:20:30 Download gff for LP02603.complete
Subject Subject Range Query Range Percent Splice Strand
CG15818-RA 27..1321 1..1295 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:35:22 Download gff for LP02603.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7410935..7412229 1..1295 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:35:22 Download gff for LP02603.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7410935..7412229 1..1295 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:35:22 Download gff for LP02603.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7410935..7412229 1..1295 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:59:11 Download gff for LP02603.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7410935..7412229 1..1295 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:28:11 Download gff for LP02603.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7410935..7412229 1..1295 100   Plus

LP02603.hyp Sequence

Translation from 2 to 871

> LP02603.hyp
PQWLSKMFSSTRIILCAFLLLYPYGSLIEAQEGRRYVCLLSDPPNQCSEY
CVSALQPVIDHLSKEQQDWGACEVKLNGSVAKLDKIEDQLTATQIQIEAQ
QAFLVNNISKAIKTEDLEQKLKDIEGNQTALSNQLKDGQKRTENQLTAIQ
KTLSDIERKLVLQRYQQIGSRYFYIEHNLQVNWRTAEQRCIEMGGHLAAF
QNAEEYNAIVGQLNKANYWLGVNDLAKQGEFISLASGKRATYFKWRKNEP
KYNNPTQHCAYVFGHENIMIVLSCTTDVMHFICQSDSDV*

LP02603.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:02:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG15818-PA 283 CG15818-PA 1..283 7..289 1483 100 Plus
lectin-28C-PC 265 CG7106-PC 1..265 7..289 445 36.8 Plus
lectin-28C-PB 265 CG7106-PB 1..265 7..289 445 36.8 Plus
CG15358-PC 229 CG15358-PC 4..226 37..288 397 34.4 Plus
CG15358-PB 229 CG15358-PB 4..226 37..288 397 34.4 Plus

LP02603.pep Sequence

Translation from 20 to 871

> LP02603.pep
MFSSTRIILCAFLLLYPYGSLIEAQEGRRYVCLLSDPPNQCSEYCVSALQ
PVIDHLSKEQQDWGACEVKLNGSVAKLDKIEDQLTATQIQIEAQQAFLVN
NISKAIKTEDLEQKLKDIEGNQTALSNQLKDGQKRTENQLTAIQKTLSDI
ERKLVLQRYQQIGSRYFYIEHNLQVNWRTAEQRCIEMGGHLAAFQNAEEY
NAIVGQLNKANYWLGVNDLAKQGEFISLASGKRATYFKWRKNEPKYNNPT
QHCAYVFGHENIMIVLSCTTDVMHFICQSDSDV*

LP02603.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:17:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19731-PA 235 GF19731-PA 1..233 36..279 328 31.3 Plus
Dana\GF15345-PA 204 GF15345-PA 52..200 135..280 295 42.1 Plus
Dana\GF14435-PA 432 GF14435-PA 215..427 38..281 256 29.1 Plus
Dana\GF15691-PA 176 GF15691-PA 29..172 137..279 242 33.3 Plus
Dana\GF15692-PA 176 GF15692-PA 53..176 159..283 230 36.2 Plus
Dana\GF14435-PA 432 GF14435-PA 21..207 31..248 217 25.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:17:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10476-PA 282 GG10476-PA 1..282 1..283 1341 86.9 Plus
Dere\GG10503-PA 276 GG10503-PA 1..272 1..279 479 37.4 Plus
Dere\GG21745-PA 255 GG21745-PA 27..252 31..282 410 35.6 Plus
Dere\GG24559-PA 1288 GG24559-PA 28..259 32..282 369 36 Plus
Dere\GG24987-PA 449 GG24987-PA 263..449 81..283 295 34.5 Plus
Dere\GG24987-PA 449 GG24987-PA 1..166 1..149 230 33.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:17:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10464-PA 197 GH10464-PA 19..194 114..279 285 35.6 Plus
Dgri\GH23701-PA 385 GH23701-PA 156..381 39..279 271 27.8 Plus
Dgri\GH11271-PA 376 GH11271-PA 147..372 39..279 268 28.5 Plus
Dgri\GH24460-PA 195 GH24460-PA 46..182 150..279 160 28.3 Plus
Dgri\GH22505-PA 106 GH22505-PA 1..71 175..244 148 36.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:14:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG15818-PA 283 CG15818-PA 1..283 1..283 1483 100 Plus
lectin-28C-PC 265 CG7106-PC 1..265 1..283 445 36.8 Plus
lectin-28C-PB 265 CG7106-PB 1..265 1..283 445 36.8 Plus
CG15358-PE 252 CG15358-PE 27..249 31..282 397 34.4 Plus
CG15358-PD 252 CG15358-PD 27..249 31..282 397 34.4 Plus
lectin-24Db-PA 359 CG2958-PA 1..359 1..283 390 28.6 Plus
lectin-22C-PB 263 CG42295-PB 1..259 1..282 357 32 Plus
lectin-24A-PA 282 CG3410-PA 31..279 38..278 343 32.6 Plus
CG2839-PA 826 CG2839-PA 36..267 36..282 286 29.9 Plus
lectin-21Cb-PB 249 CG13686-PB 1..248 1..279 271 28.7 Plus
lectin-21Ca-PA 269 CG2826-PA 34..265 43..278 265 31.6 Plus
CG7763-PD 232 CG7763-PD 29..232 39..283 244 27.6 Plus
CG7763-PC 232 CG7763-PC 29..232 39..283 244 27.6 Plus
lectin-29Ca-PA 236 CG17799-PA 43..233 85..280 217 28 Plus
lectin-30A-PA 223 CG17011-PA 21..220 78..280 212 28.1 Plus
Acp29AB-PA 234 CG17797-PA 27..231 71..280 191 25.8 Plus
CG43055-PA 180 CG43055-PA 42..140 159..253 152 31.3 Plus
lectin-37Db-PB 150 CG33533-PB 30..148 161..278 150 31.4 Plus
lectin-37Db-PA 150 CG33533-PA 30..148 161..278 150 31.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:17:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17697-PA 153 GI17697-PA 23..118 149..244 183 33.3 Plus
Dmoj\GI24639-PA 192 GI24639-PA 63..158 149..244 180 31.2 Plus
Dmoj\GI14022-PA 161 GI14022-PA 27..161 152..282 176 32.4 Plus
Dmoj\GI24628-PA 146 GI24628-PA 28..120 161..253 162 34.4 Plus
Dmoj\GI14792-PA 194 GI14792-PA 54..181 159..279 161 29.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:17:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10741-PA 236 GL10741-PA 39..235 40..282 315 30.6 Plus
Dper\GL26175-PA 238 GL26175-PA 22..226 93..282 266 33.3 Plus
Dper\GL26705-PA 277 GL26705-PA 100..245 107..249 233 32.4 Plus
Dper\GL26845-PA 183 GL26845-PA 54..179 159..281 226 39.4 Plus
Dper\GL19670-PA 282 GL19670-PA 148..278 159..282 203 33.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:17:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24466-PA 236 GA24466-PA 39..235 40..282 322 31 Plus
Dpse\GA25561-PA 181 GA25561-PA 24..169 143..282 248 38.5 Plus
Dpse\GA29024-PA 277 GA29024-PA 100..245 107..249 236 33.1 Plus
Dpse\GA29021-PA 141 GA29021-PA 4..134 152..282 228 35.1 Plus
Dpse\GA22633-PA 411 GA22633-PA 293..396 159..261 215 41.3 Plus
Dpse\GA22633-PA 411 GA22633-PA 127..235 133..234 210 45 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:17:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16433-PA 283 GM16433-PA 1..283 1..283 1452 94.3 Plus
Dsec\GM16582-PA 268 GM16582-PA 43..265 31..282 411 34 Plus
Dsec\GM18119-PA 291 GM18119-PA 11..290 13..281 373 33.2 Plus
Dsec\GM18457-PA 255 GM18457-PA 38..248 67..282 288 33.2 Plus
Dsec\GM16651-PA 249 GM16651-PA 71..248 108..279 258 36.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:17:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23470-PA 283 GD23470-PA 1..283 1..283 1441 94 Plus
Dsim\GD23494-PA 275 GD23494-PA 32..274 32..283 476 39.5 Plus
Dsim\GD11996-PA 252 GD11996-PA 5..249 4..282 414 32.9 Plus
Dsim\GD22727-PA 291 GD22727-PA 31..290 36..281 369 33.3 Plus
Dsim\GD22877-PA 230 GD22877-PA 3..229 32..280 335 33.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:17:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16497-PA 252 GJ16497-PA 6..250 35..281 314 32.9 Plus
Dvir\GJ16447-PA 189 GJ16447-PA 2..186 60..279 276 32.9 Plus
Dvir\GJ11333-PA 226 GJ11333-PA 59..224 126..278 197 29 Plus
Dvir\GJ18255-PA 159 GJ18255-PA 25..158 148..279 195 32.6 Plus
Dvir\GJ16416-PA 164 GJ16416-PA 46..162 161..280 190 33.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:17:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24541-PA 431 GK24541-PA 30..206 40..253 276 30.6 Plus
Dwil\GK19037-PA 249 GK19037-PA 79..243 109..282 224 31.2 Plus
Dwil\GK19210-PA 164 GK19210-PA 40..161 158..278 212 35 Plus
Dwil\GK18670-PA 255 GK18670-PA 52..223 74..248 208 30.9 Plus
Dwil\GK25689-PA 196 GK25689-PA 47..183 150..279 158 28.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:17:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14533-PA 282 GE14533-PA 1..282 1..283 1286 83.4 Plus
Dyak\GE14642-PA 274 GE14642-PA 9..273 1..283 498 36.5 Plus
Dyak\GE15323-PA 368 GE15323-PA 143..365 31..282 423 35.6 Plus
Dyak\GE18275-PA 358 GE18275-PA 177..358 90..283 315 37.6 Plus
Dyak\GE16979-PA 269 GE16979-PA 34..265 43..278 273 32.4 Plus
Dyak\GE18275-PA 358 GE18275-PA 1..136 1..144 206 33.1 Plus