Clone LP02703 Report

Search the DGRC for LP02703

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:27
Well:3
Vector:pOT2
Associated Gene/TranscriptCG11349-RA
Protein status:LP02703.pep: validated full length
Preliminary Size:1880
Sequenced Size:1969

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11349 2002-01-01 Sim4 clustering to Release 2
CG11349 2002-05-18 Blastp of sequenced clone
CG11349 2003-01-01 Sim4 clustering to Release 3
CG11349 2008-04-29 Release 5.5 accounting
CG11349 2008-08-15 Release 5.9 accounting
CG11349 2008-12-18 5.12 accounting

Clone Sequence Records

LP02703.complete Sequence

1969 bp (1969 high quality bases) assembled on 2002-05-18

GenBank Submission: AY118990

> LP02703.complete
TCGTGATCCTGGTTCTATGCCTTATGGCAATCGCATGTCTGGCGGACGTT
TCCCATGTGAAACACCACAAGCACCAGCGGCATCATCACTCCAGGGATCA
CGAAGATGACGATGAGGAGTCCCATTACCTACCTCCCCACGAGGAAAAGG
AGGTGGAGCAACCTTTTTACAAGAAGGAGAAGCACACCAGTGAAAAGGTG
GTTTACCACAAGGTAGAGGAGCACGAGGAGCCCAAATACTACAAGGAGCA
TCAACATGAAGAGCCCAAAAAGCAGCGAGTGGATCACTACCATCACTATG
ACAAGAAGCCAGAAGTAAAGACCCAGCACATTCACTACAAGCATAGCAAG
CCCCATGTCCGTACGGATTACAATCAGGACTTGTTCACCCCAGCTGCTAC
CCAAGTGGTTTATCGCCGCCGTCGTCCTAGTCGAATTCTATACGCCAGTG
CCCCCAACTCGGTGTTCCACACCCACACGCAGATCAACGTGCAGTCCCAG
GATTCGGAATTGAATTCCCTTACTCGCCCAGATCGTGCAGCAGGAGCACA
GGATCCTGCTGGGGCTCAAGCACCGACTGGAGCCCAGGCACCAGGATTTC
GACCCAACTGCCAGTTTGTTGGACCTGGAAACGTACCACCTGGCTGTGGA
CCCTCTGATCCCATAGGTGCTCAGCTACCAGCCAGTGCTTTGGCTCCCAC
TGGTGCTAATCTTCCGGCCAATCAACCTGTTGCCGGCGGACAATTGGCTG
TTCTGGGTAACGGTCAGCGACCTCCACGTCCAGGTGGCTATGGAGGTGGA
TATGGCAACCGACTCAACTTTTTTGTTGATCCTTCGCTGGGCGCTCAGCT
GGGAGCCATAGGTAATGCTGGAGCTGGAAATCAACAGGCTGCCGGAGGAG
GTCAGCTTGCGGGAGGAGCTCAACTTGGAGGGAGCCAAGGATTCGACCCT
TCCTTTGGTGCCCAAGCAGCTGCCGGAGGACCATTTAACACTGGTTTTGG
AGCTGGTCAAAGACCTCAAAGACCTGCGCAAAACCAATATGATCCCAACC
TTCAGCTAGGTGGCCCTTTTGACCCCTCCGTGGGTGCTCAATTGGGCGCA
GGTCAGGGTGTTTCTAACCAAAGACCAAGTGGACAGGGAGCATTTGATCC
TTCTACAGGTGCTCAATTGGGCGCAGGTGAGGGTGTTTCTAACCAAAGAC
CAAGTGGACAGGGAGCATTTGATCCTTCTACGGGTGCTCAATTGGGTGCA
GGTCAGGGCTTTAACCAGAGACCAAGTGCACAGGGAGCATTTGATCCTTC
GACAGGTGCCCAACTTGGAGCTGGACAAGGCGTGCCTAACCAGCGACCCA
ATGCAGCTGGACCAGGAGCTTTTGATCCCAATCAGCGACAGTCCGACCCC
TCCATTGGAGCCCAATTGGCAGCGGGACAAGTACCACGCCTCAACAACCG
ACGACAGCGCAATCGATCCAACTACCAGGGTCTCAATGTGCTGAATGGAA
ACGTTTTCGGACAACCCCATCTCCAGGGACCCACAAATGCGCTGGGAAAT
CAACAGGACACCAACATCATAGACGGCAACTTCTACAGCGATCCTCATCA
TGGACACCAGCGGGCTTTGGTATCGGTTAATCCTAATCAGCGTTCAGTCC
TTATACCCGATGACGATGATGCGGACGATGATGGGCAGCTAGGATTTCTG
GGCTTTGCGGCTAGTAACAAGCAGTCCTCTTATGTGGTTGCTCCCAAACA
ACTGCGATCTCATAGGCGCAGTTCAAAGCGAAACAATGTGGATCTTAAAA
CATCTGCTTCGGAGTACGACACTGACTATCGTGAGGATGGCTATCACTAC
CAGAAGCCCAAACAGTCATTCGAGTTTTAAGTATTTTAAAACAGAACATA
TTATAACATAAATTAAATCATACTTATCAGCATTTGCTACAAGAGCATAC
CAAAAAAAAAAAAAAAAAA

LP02703.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:02:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG11349-RA 1951 CG11349-RA 1..1951 1..1951 9755 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:03:19
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 4472502..4474452 1..1951 9620 99.5 Plus
chr3L 24539361 chr3L 4473584..4473742 1158..1313 550 91.2 Plus
chr3L 24539361 chr3L 4473659..4473814 1083..1241 550 91.2 Plus
chr3L 24539361 chr3L 4473569..4473667 1218..1313 250 85.9 Plus
chr3L 24539361 chr3L 4473733..4473814 1082..1166 240 88.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:47:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:03:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4473145..4475102 1..1958 9775 99.9 Plus
3L 28110227 3L 4474227..4474385 1158..1313 550 91.2 Plus
3L 28110227 3L 4474302..4474457 1083..1241 550 91.2 Plus
3L 28110227 3L 4474226..4474310 1232..1313 240 88.2 Plus
3L 28110227 3L 4474376..4474457 1082..1166 240 88.2 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:34:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 4473145..4475102 1..1958 9775 99.9 Plus
Blast to na_te.dros performed on 2019-03-16 02:03:18 has no hits.

LP02703.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:04:04 Download gff for LP02703.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 4472502..4474452 1..1951 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:34:01 Download gff for LP02703.complete
Subject Subject Range Query Range Percent Splice Strand
CG11349-RA 1..1857 24..1880 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:43:29 Download gff for LP02703.complete
Subject Subject Range Query Range Percent Splice Strand
CG11349-RB 11..1890 1..1880 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:11:02 Download gff for LP02703.complete
Subject Subject Range Query Range Percent Splice Strand
CG11349-RB 11..1890 1..1880 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:35:37 Download gff for LP02703.complete
Subject Subject Range Query Range Percent Splice Strand
CG11349-RA 1..1857 24..1880 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:57:02 Download gff for LP02703.complete
Subject Subject Range Query Range Percent Splice Strand
CG11349-RB 11..1890 1..1880 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:18:03 Download gff for LP02703.complete
Subject Subject Range Query Range Percent Splice Strand
CG11349-RA 1..1951 1..1951 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:43:29 Download gff for LP02703.complete
Subject Subject Range Query Range Percent Splice Strand
CG11349-RB 20..1970 1..1951 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:11:02 Download gff for LP02703.complete
Subject Subject Range Query Range Percent Splice Strand
CG11349-RB 20..1970 1..1951 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 17:07:18 Download gff for LP02703.complete
Subject Subject Range Query Range Percent Splice Strand
CG11349-RA 1..1951 1..1951 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:57:02 Download gff for LP02703.complete
Subject Subject Range Query Range Percent Splice Strand
CG11349-RB 20..1970 1..1951 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:04:04 Download gff for LP02703.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4473145..4475095 1..1951 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:04:04 Download gff for LP02703.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4473145..4475095 1..1951 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:04:04 Download gff for LP02703.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4473145..4475095 1..1951 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:11:02 Download gff for LP02703.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4473145..4475095 1..1951 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:08:01 Download gff for LP02703.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4473145..4475095 1..1951 100   Plus

LP02703.hyp Sequence

Translation from 2 to 1879

> LP02703.hyp
VILVLCLMAIACLADVSHVKHHKHQRHHHSRDHEDDDEESHYLPPHEEKE
VEQPFYKKEKHTSEKVVYHKVEEHEEPKYYKEHQHEEPKKQRVDHYHHYD
KKPEVKTQHIHYKHSKPHVRTDYNQDLFTPAATQVVYRRRRPSRILYASA
PNSVFHTHTQINVQSQDSELNSLTRPDRAAGAQDPAGAQAPTGAQAPGFR
PNCQFVGPGNVPPGCGPSDPIGAQLPASALAPTGANLPANQPVAGGQLAV
LGNGQRPPRPGGYGGGYGNRLNFFVDPSLGAQLGAIGNAGAGNQQAAGGG
QLAGGAQLGGSQGFDPSFGAQAAAGGPFNTGFGAGQRPQRPAQNQYDPNL
QLGGPFDPSVGAQLGAGQGVSNQRPSGQGAFDPSTGAQLGAGEGVSNQRP
SGQGAFDPSTGAQLGAGQGFNQRPSAQGAFDPSTGAQLGAGQGVPNQRPN
AAGPGAFDPNQRQSDPSIGAQLAAGQVPRLNNRRQRNRSNYQGLNVLNGN
VFGQPHLQGPTNALGNQQDTNIIDGNFYSDPHHGHQRALVSVNPNQRSVL
IPDDDDADDDGQLGFLGFAASNKQSSYVVAPKQLRSHRRSSKRNNVDLKT
SASEYDTDYREDGYHYQKPKQSFEF*

LP02703.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:48:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG11349-PB 629 CG11349-PB 5..629 1..625 3372 100 Plus
prc-PB 1713 CG5700-PB 214..499 181..476 264 36.7 Plus
prc-PB 1713 CG5700-PB 333..641 181..476 262 34.3 Plus
prc-PB 1713 CG5700-PB 452..839 181..499 256 30.5 Plus
prc-PB 1713 CG5700-PB 123..414 200..476 236 34 Plus
prc-PB 1713 CG5700-PB 873..1192 181..517 213 31.3 Plus
CG10555-PB 926 CG10555-PB 499..816 176..478 179 27.2 Plus
CG10555-PA 926 CG10555-PA 499..816 176..478 179 27.2 Plus
Cpr47Ef-PD 601 CG13214-PD 203..430 209..456 169 29.7 Plus

LP02703.pep Sequence

Translation from 23 to 1879

> LP02703.pep
MAIACLADVSHVKHHKHQRHHHSRDHEDDDEESHYLPPHEEKEVEQPFYK
KEKHTSEKVVYHKVEEHEEPKYYKEHQHEEPKKQRVDHYHHYDKKPEVKT
QHIHYKHSKPHVRTDYNQDLFTPAATQVVYRRRRPSRILYASAPNSVFHT
HTQINVQSQDSELNSLTRPDRAAGAQDPAGAQAPTGAQAPGFRPNCQFVG
PGNVPPGCGPSDPIGAQLPASALAPTGANLPANQPVAGGQLAVLGNGQRP
PRPGGYGGGYGNRLNFFVDPSLGAQLGAIGNAGAGNQQAAGGGQLAGGAQ
LGGSQGFDPSFGAQAAAGGPFNTGFGAGQRPQRPAQNQYDPNLQLGGPFD
PSVGAQLGAGQGVSNQRPSGQGAFDPSTGAQLGAGEGVSNQRPSGQGAFD
PSTGAQLGAGQGFNQRPSAQGAFDPSTGAQLGAGQGVPNQRPNAAGPGAF
DPNQRQSDPSIGAQLAAGQVPRLNNRRQRNRSNYQGLNVLNGNVFGQPHL
QGPTNALGNQQDTNIIDGNFYSDPHHGHQRALVSVNPNQRSVLIPDDDDA
DDDGQLGFLGFAASNKQSSYVVAPKQLRSHRRSSKRNNVDLKTSASEYDT
DYREDGYHYQKPKQSFEF*

LP02703.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:06:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25077-PA 607 GF25077-PA 13..607 2..618 1531 64.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:06:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15233-PA 591 GG15233-PA 1..591 1..618 2195 83.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:06:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15684-PA 537 GH15684-PA 24..492 16..534 541 40.8 Plus
Dgri\GH23841-PA 150 GH23841-PA 66..115 484..534 186 68.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:51:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG11349-PB 629 CG11349-PB 12..629 1..618 3339 100 Plus
prc-PB 1713 CG5700-PB 214..499 174..469 264 36.7 Plus
prc-PB 1713 CG5700-PB 333..641 174..469 262 34.3 Plus
prc-PB 1713 CG5700-PB 452..839 174..492 256 30.5 Plus
prc-PB 1713 CG5700-PB 123..414 193..469 236 34 Plus
prc-PB 1713 CG5700-PB 873..1192 174..510 213 31.3 Plus
CG10555-PB 926 CG10555-PB 499..816 169..471 179 27.2 Plus
CG10555-PA 926 CG10555-PA 499..816 169..471 179 27.2 Plus
Cpr47Ef-PD 601 CG13214-PD 203..430 202..449 169 29.7 Plus
Cpr47Ef-PC 612 CG13214-PC 203..430 202..449 169 29.7 Plus
resilin-PB 575 CG15920-PB 265..567 168..458 160 28.3 Plus
HnRNP-K-PD 315 CG13425-PD 38..270 236..482 159 31.7 Plus
HnRNP-K-PB 413 CG13425-PB 133..365 236..482 159 31.7 Plus
HnRNP-K-PE 493 CG13425-PE 216..448 236..482 159 31.7 Plus
HnRNP-K-PF 496 CG13425-PF 216..448 236..482 159 31.7 Plus
HnRNP-K-PA 496 CG13425-PA 216..448 236..482 159 31.7 Plus
HnRNP-K-PC 502 CG13425-PC 222..454 236..482 159 31.7 Plus
resilin-PA 620 CG15920-PA 29..366 178..501 159 27.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:06:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12732-PA 842 GI12732-PA 18..507 7..475 523 37.6 Plus
Dmoj\GI12732-PA 842 GI12732-PA 435..840 180..614 277 39.4 Plus
Dmoj\GI21868-PA 409 GI21868-PA 7..407 180..614 246 39.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:06:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17900-PA 599 GL17900-PA 12..599 1..618 1499 60.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:07:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10938-PA 599 GA10938-PA 12..599 1..618 1517 60.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:07:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14666-PA 617 GM14666-PA 1..617 1..618 2582 92.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:07:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13849-PA 616 GD13849-PA 1..616 1..618 2507 92.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:07:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15505-PA 606 GJ15505-PA 13..605 5..615 902 45.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:07:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21454-PA 624 GE21454-PA 1..624 1..618 2354 89.2 Plus