Clone LP02831 Report

Search the DGRC for LP02831

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:28
Well:31
Vector:pOT2
Associated Gene/TranscriptTsp42Ec-RA
Protein status:LP02831.pep: gold
Preliminary Size:825
Sequenced Size:1038

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12847 2002-01-01 Sim4 clustering to Release 2
CG12847 2002-05-18 Blastp of sequenced clone
CG12847 2003-01-01 Sim4 clustering to Release 3
Tsp42Ec 2008-04-29 Release 5.5 accounting
Tsp42Ec 2008-08-15 Release 5.9 accounting
Tsp42Ec 2008-12-18 5.12 accounting

Clone Sequence Records

LP02831.complete Sequence

1038 bp (1038 high quality bases) assembled on 2002-05-18

GenBank Submission: AY118995

> LP02831.complete
TCCAATCGAACGACAGTAAACGACGCGAGTGCGCGATAAAATCAGAGACA
CCGACAACTCCTTTGGATAAAACAATAGTGTTTATTTAATTCTACTAAAT
ACAGGAGCAAACTATATACTTTCAAAATGGGTTGTCTATCGGGAATAGTC
AACTTTATTTTATATATTGTCAATATCGTGTTTTTGATCGTTGGCATCCT
ACTGATCGTGTTGGGCTCGATCATGCTGTCCGATCTGAGCCGCTTCGATG
TCGCGGGGAGTGGGACGGACCCGAACACCATCCCCATCTGCGTCACCGTC
CTGGGAGGCCTCATCTTCGTGGTGTCCTTCTTCGGGTGCTACGGCATTTT
TCGGCAGAGTGTCTGCATGACCGGCGCGTACACCAGCATGGTTTTTGTGC
TCTTTATCCTGCAACTGGTGCTTACGTGCTGGGTGTTCGTGAACCGATCT
GCCTTCCTGGGCGATATGTCCAATCTGGTTAACTTGCTCTGGGACTCCCA
TGACTACACTGCCATGGGCGTTCTTGAGGAAACCTTCGGCTGCTGCGGTG
ATACGAGCTATACCAACTACAACAACATCGGCCTTTCGGTTCCCGGAACC
TGCTGCGGCTACCTGGACCGCCAGGCCACATGCAACACCCCCTCGGTCTA
CCAGTCGAGGCCCGGCTGCAGCGCCAAGTTCGAGGAGTTCTGGAACGACA
ACATGGACATCATCCGCTGGTCCGGCCTCGGCCTCTGCATCTTCGACCTG
GTCGTCTTCCTCATCGCCGGCGCCCTGACCAACTGCATGCGCAGCCAGAA
CGCAGGTCGCCAGGTGTACGCCTAAACTTGTGAGGAACAAGCCAAAGGCC
AAAGGATCTACATATGTCTACTTATGTTACCATATAACAAACTGTTTTTC
GAGCCGTGCCAATATTAATATATACGTCTACATTTCGCCTATTTATCAGT
TACTACTTATGTTATTCTTTATACTCTTTTTGGAGCAATGCCAATATTAA
TATATACCGCTACAACATTTAAAAAAAAAAAAAAAAAA

LP02831.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:54:56
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ec-RA 1131 Tsp42Ec-RA 106..1126 1..1021 5105 100 Plus
nc_4773.a 233 nc_4773.a 1..233 4..236 1165 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:49:21
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 2895388..2896030 378..1020 3185 99.7 Plus
chr2R 21145070 chr2R 2895133..2895325 186..378 950 99.5 Plus
chr2R 21145070 chr2R 2887567..2887752 1..186 930 100 Plus
chr2R 21145070 chr2R 2893855..2894040 1..186 930 100 Plus
chr2R 21145070 chr2R 2888845..2888922 186..263 390 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:47:30 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:49:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7007980..7008623 378..1021 3220 100 Plus
2R 25286936 2R 7007725..7007917 186..378 965 100 Plus
2R 25286936 2R 7000159..7000344 1..186 930 100 Plus
2R 25286936 2R 7006447..7006632 1..186 930 100 Plus
2R 25286936 2R 7001437..7001514 186..263 390 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:14:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7009179..7009822 378..1021 3220 100 Plus
2R 25260384 2R 7008924..7009116 186..378 965 100 Plus
2R 25260384 2R 7007646..7007831 1..186 930 100 Plus
2R 25260384 2R 7001358..7001543 1..186 930 100 Plus
2R 25260384 2R 7002636..7002713 186..263 390 100 Plus
Blast to na_te.dros performed on 2019-03-16 02:49:20 has no hits.

LP02831.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:50:21 Download gff for LP02831.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 2893855..2894040 1..186 100 -> Plus
chr2R 2895134..2895325 187..378 99 -> Plus
chr2R 2895389..2896030 379..1020 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:34:16 Download gff for LP02831.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ec-RA 1..699 127..825 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:52:25 Download gff for LP02831.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ec-RA 1..699 127..825 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:39:57 Download gff for LP02831.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ec-RA 1..699 127..825 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:34:47 Download gff for LP02831.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ec-RA 1..699 127..825 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:22:13 Download gff for LP02831.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ec-RA 1..699 127..825 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:04:13 Download gff for LP02831.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ec-RA 1..1020 1..1020 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:52:25 Download gff for LP02831.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ec-RA 1..1020 1..1020 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:39:57 Download gff for LP02831.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ec-RA 6..1025 1..1020 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:34:47 Download gff for LP02831.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ec-RA 1..1020 1..1020 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:22:13 Download gff for LP02831.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ec-RA 6..1025 1..1020 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:50:21 Download gff for LP02831.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7006447..7006632 1..186 100 -> Plus
2R 7007726..7007917 187..378 100 -> Plus
2R 7007981..7008622 379..1020 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:50:21 Download gff for LP02831.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7006447..7006632 1..186 100 -> Plus
2R 7007726..7007917 187..378 100 -> Plus
2R 7007981..7008622 379..1020 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:50:21 Download gff for LP02831.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7006447..7006632 1..186 100 -> Plus
2R 7007726..7007917 187..378 100 -> Plus
2R 7007981..7008622 379..1020 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:39:57 Download gff for LP02831.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2893952..2894137 1..186 100 -> Plus
arm_2R 2895231..2895422 187..378 100 -> Plus
arm_2R 2895486..2896127 379..1020 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:16:46 Download gff for LP02831.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7009180..7009821 379..1020 100   Plus
2R 7007646..7007831 1..186 100 -> Plus
2R 7008925..7009116 187..378 100 -> Plus

LP02831.pep Sequence

Translation from 126 to 824

> LP02831.pep
MGCLSGIVNFILYIVNIVFLIVGILLIVLGSIMLSDLSRFDVAGSGTDPN
TIPICVTVLGGLIFVVSFFGCYGIFRQSVCMTGAYTSMVFVLFILQLVLT
CWVFVNRSAFLGDMSNLVNLLWDSHDYTAMGVLEETFGCCGDTSYTNYNN
IGLSVPGTCCGYLDRQATCNTPSVYQSRPGCSAKFEEFWNDNMDIIRWSG
LGLCIFDLVVFLIAGALTNCMRSQNAGRQVYA*

LP02831.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:29:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12680-PA 228 GF12680-PA 1..225 1..227 984 81.9 Plus
Dana\GF12679-PA 223 GF12679-PA 1..223 1..224 467 41 Plus
Dana\GF12681-PA 228 GF12681-PA 1..227 1..225 380 36.4 Plus
Dana\GF13154-PA 226 GF13154-PA 1..219 1..223 357 35.1 Plus
Dana\GF12682-PA 227 GF12682-PA 1..220 1..223 290 32.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:29:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23242-PA 232 GG23242-PA 1..232 1..232 1112 90.9 Plus
Dere\GG23241-PA 222 GG23241-PA 1..222 1..224 489 41.9 Plus
Dere\GG10779-PA 227 GG10779-PA 1..224 1..229 346 33.8 Plus
Dere\GG23240-PA 226 GG23240-PA 1..219 1..223 306 32.9 Plus
Dere\GG23243-PA 228 GG23243-PA 1..228 1..231 262 31.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:29:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21497-PA 235 GH21497-PA 1..235 1..232 635 56.4 Plus
Dgri\GH21496-PA 223 GH21496-PA 1..223 1..224 492 43.6 Plus
Dgri\GH21495-PA 223 GH21495-PA 1..223 1..224 477 42.7 Plus
Dgri\GH21494-PA 226 GH21494-PA 1..219 1..223 341 33.8 Plus
Dgri\GH21498-PA 227 GH21498-PA 1..227 1..231 315 32.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:41:34
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ec-PA 232 CG12847-PA 1..232 1..232 1236 100 Plus
CG30160-PA 222 CG30160-PA 1..222 1..224 513 41.9 Plus
Tsp42Eb-PB 222 CG18816-PB 1..222 1..224 513 41.9 Plus
Tsp42Ed-PB 227 CG12846-PB 1..227 1..231 365 34.3 Plus
Tsp42Ed-PA 227 CG12846-PA 1..227 1..231 365 34.3 Plus
Tsp42Ea-PC 226 CG18817-PC 1..219 1..223 354 34.4 Plus
Tsp42Ea-PB 226 CG18817-PB 1..219 1..223 354 34.4 Plus
Tsp42Ea-PA 226 CG18817-PA 1..219 1..223 354 34.4 Plus
Tsp42Ee-PB 228 CG10106-PB 1..221 1..223 330 33.3 Plus
Tsp42Ee-PA 228 CG10106-PA 1..221 1..223 330 33.3 Plus
Tsp42El-PA 217 CG12840-PA 1..201 1..214 237 29.5 Plus
Tsp47F-PB 239 CG9033-PB 4..238 3..226 210 24.8 Plus
Tsp42Er-PA 211 CG12837-PA 1..205 1..224 188 23.5 Plus
Tsp29Fa-PC 248 CG9494-PC 1..171 1..160 184 27.8 Plus
Tsp29Fa-PB 248 CG9494-PB 1..171 1..160 184 27.8 Plus
Tsp29Fa-PA 248 CG9494-PA 1..171 1..160 184 27.8 Plus
Tsp39D-PB 235 CG8666-PB 9..229 8..222 167 20.7 Plus
Tsp42Eq-PA 219 CG12832-PA 14..215 21..229 153 27 Plus
Tsp42Ek-PB 215 CG12841-PB 1..204 1..215 152 26.4 Plus
Tsp42Ek-PA 215 CG12841-PA 1..204 1..215 152 26.4 Plus
lbm-PB 208 CG2374-PB 8..192 27..214 149 25.6 Plus
lbm-PA 208 CG2374-PA 8..192 27..214 149 25.6 Plus
Tsp96F-PC 268 CG6120-PC 5..265 2..225 146 22 Plus
Tsp96F-PA 268 CG6120-PA 5..265 2..225 146 22 Plus
Tsp96F-PB 284 CG6120-PB 5..265 2..225 146 22 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:29:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19466-PA 230 GI19466-PA 1..230 1..228 743 60.6 Plus
Dmoj\GI19465-PA 223 GI19465-PA 1..223 1..224 520 46.7 Plus
Dmoj\GI19468-PA 227 GI19468-PA 1..225 1..229 347 34.6 Plus
Dmoj\GI19464-PA 226 GI19464-PA 1..219 1..223 342 34.7 Plus
Dmoj\GI19469-PA 231 GI19469-PA 1..224 1..223 274 34.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:29:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11135-PA 229 GL11135-PA 1..229 1..232 864 70.7 Plus
Dper\GL11136-PA 227 GL11136-PA 1..227 1..231 362 36.5 Plus
Dper\GL11133-PA 226 GL11133-PA 1..219 1..223 343 34.7 Plus
Dper\GL11134-PA 162 GL11134-PA 3..162 9..224 272 32.4 Plus
Dper\GL11138-PA 252 GL11138-PA 45..245 21..223 251 30.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:29:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11852-PA 229 GA11852-PA 1..229 1..232 869 71.1 Plus
Dpse\GA15688-PA 223 GA15688-PA 1..223 1..224 437 41 Plus
Dpse\GA11851-PA 227 GA11851-PA 1..227 1..231 364 36.9 Plus
Dpse\GA15095-PA 226 GA15095-PA 1..219 1..223 343 34.7 Plus
Dpse\GA10076-PA 228 GA10076-PA 1..221 1..223 279 30.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:29:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20914-PA 232 GM20914-PA 1..232 1..232 1153 95.7 Plus
Dsec\GM20913-PA 222 GM20913-PA 1..222 1..224 489 42.3 Plus
Dsec\GM20827-PA 227 GM20827-PA 1..227 1..231 353 34.8 Plus
Dsec\GM20912-PA 226 GM20912-PA 1..219 1..223 323 34.2 Plus
Dsec\GM20915-PA 228 GM20915-PA 1..228 1..231 267 32.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:29:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10443-PA 232 GD10443-PA 1..232 1..232 1157 95.7 Plus
Dsim\GD10442-PA 222 GD10442-PA 1..222 1..224 487 41.9 Plus
Dsim\GD10280-PA 227 GD10280-PA 1..224 1..229 349 33.8 Plus
Dsim\GD10441-PA 226 GD10441-PA 1..219 1..223 323 34.2 Plus
Dsim\GD10444-PA 228 GD10444-PA 1..228 1..231 276 33.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:29:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15126-PA 231 GJ15126-PA 1..231 1..232 623 57.4 Plus
Dvir\GJ15125-PA 222 GJ15125-PA 1..222 1..224 383 42.7 Plus
Dvir\GJ15127-PA 227 GJ15127-PA 1..225 1..229 344 33.3 Plus
Dvir\GJ15124-PA 226 GJ15124-PA 1..219 1..223 341 34.2 Plus
Dvir\GJ15128-PA 230 GJ15128-PA 1..223 1..223 249 31.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:29:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21773-PA 233 GK21773-PA 1..231 1..229 641 53.9 Plus
Dwil\GK21774-PA 178 GK21774-PA 1..171 1..170 516 63.8 Plus
Dwil\GK21772-PA 222 GK21772-PA 1..222 1..224 469 41.4 Plus
Dwil\GK21771-PA 226 GK21771-PA 1..219 1..223 358 35.1 Plus
Dwil\GK21775-PA 229 GK21775-PA 1..229 1..231 330 35.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:29:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19092-PA 232 GE19092-PA 1..232 1..232 1126 94.4 Plus
Dyak\GE19091-PA 222 GE19091-PA 1..222 1..224 482 41 Plus
Dyak\Tsp42Ed-PA 227 GE24279-PA 1..224 1..229 347 33.8 Plus
Dyak\GE19090-PA 226 GE19090-PA 1..219 1..223 317 33.3 Plus
Dyak\Tsp42Ee-PA 228 GE19093-PA 1..221 1..223 266 32.5 Plus

LP02831.hyp Sequence

Translation from 126 to 824

> LP02831.hyp
MGCLSGIVNFILYIVNIVFLIVGILLIVLGSIMLSDLSRFDVAGSGTDPN
TIPICVTVLGGLIFVVSFFGCYGIFRQSVCMTGAYTSMVFVLFILQLVLT
CWVFVNRSAFLGDMSNLVNLLWDSHDYTAMGVLEETFGCCGDTSYTNYNN
IGLSVPGTCCGYLDRQATCNTPSVYQSRPGCSAKFEEFWNDNMDIIRWSG
LGLCIFDLVVFLIAGALTNCMRSQNAGRQVYA*

LP02831.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:04:59
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ec-PA 232 CG12847-PA 1..232 1..232 1236 100 Plus
CG30160-PA 222 CG30160-PA 1..222 1..224 513 41.9 Plus
Tsp42Eb-PB 222 CG18816-PB 1..222 1..224 513 41.9 Plus
Tsp42Ed-PB 227 CG12846-PB 1..227 1..231 365 34.3 Plus
Tsp42Ed-PA 227 CG12846-PA 1..227 1..231 365 34.3 Plus