Clone LP02841 Report

Search the DGRC for LP02841

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:28
Well:41
Vector:pOT2
Associated Gene/TranscriptCG9989-RA
Protein status:LP02841.pep: gold
Preliminary Size:1115
Sequenced Size:1207

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9989 2002-01-01 Sim4 clustering to Release 2
CG9989 2002-05-18 Blastp of sequenced clone
CG9989 2003-01-01 Sim4 clustering to Release 3
CG9989 2008-04-29 Release 5.5 accounting
CG9989 2008-08-15 Release 5.9 accounting
CG9989 2008-12-18 5.12 accounting

Clone Sequence Records

LP02841.complete Sequence

1207 bp (1207 high quality bases) assembled on 2002-05-18

GenBank Submission: AY118996

> LP02841.complete
AGATGCCCGATCTGAAGTATATGTTGACGATTCTAAGCCTGTATTTCTTT
GTAGGAAGTGTTCAAGCGAATTGCTTAATCGACTTGGCTCATTTGAATGC
CAATTATGTGTACTTAAGCCAAAATAACGGAGTCTATGATATTCAGCGCA
GTGATATTGTGGAAATCCACCAGACGTTGTATCTGCTGTGCAATGGAGGA
CTTCATCGCACCACATTCCTGTGTCGATATGACAGTGTTTTCAGTCCAGC
GCTAAGCTCAGCAGCATGTGCACCACCCGATCCTGTCGTGGTAAAAGTAC
CAGATACATCTTGTTCCATTCCGAGTGCTACGTTCGCCGTAGGATTTTCC
TTCAATGGACGCTTTATGGAACTGTATCGCAATTGTTTTGATGGCTACAG
CTTGGCGTTTCAACATTCCATCTACAAGGCTTATCGCTACGTAAACACCG
TTCCACGTCCCAATCCCACTTGGCAGTCGGATCAATTAAGTGGTGGATTT
GACAATGCCTACGAGGGAAGAGCAACACAAGCTTGTTTGCTCACTAACCT
GGGCGCAGTACAGCCGCAGTGTAAATTTGATCGTGGCCACATGACACCGG
CTTCTGCATTTATATCCACAGAGCTGAAGAAGTCAACGTTCAGGTATCTA
AACGCTATCCCCCAATATCGAGGAGTTAATCGTGGCAAATGGAAGGCCGT
TGAGACCTGGGTGAACAATATGGTTAGGGGACTGTATGATAATCCAATCA
TCAATAATGTACAAATACCGCGTACTTACGATGTCCTTAAGGTTTGCATT
GGGGCATTGGGAGTGCATAGACTAAGACATAATACCAATAACAATATGAT
ACCAATTTACCTGTTGGATAATAACAAAATTCCCGTGCCAGAGTGGATGT
ACAAGATAGTTAGCCATCTCTCCGGAGATAAATGGGTAATGCTGACCTAC
AACGACGTAAGTCTACCCAATCAGCAGGCATTAAACCAGATCTGCCATGT
GATACCCTGTCATCCGGGTCTTAACCTTAATACGAAGGACGTTGGACACA
CTGTCTGCTGCGATCCGTACCGTTTTATTACCATAAACGCTCCACACTTA
ACTGGTGTTTGCTAAGGTCAAACTAAATATTTTCTTAGATCTTGAAAATG
TGCATATTAAAATAAATATAAAGTGGTATTTGAAAAAAAAAAAAAAAAAA
AAAAAAA

LP02841.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:02:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG9989-RA 1333 CG9989-RA 135..1320 1..1186 5930 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:45:32
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 24494361..24495095 448..1182 3660 99.9 Plus
chr3R 27901430 chr3R 24493912..24494310 49..447 1980 99.7 Plus
chr3R 27901430 chr3R 24493810..24493857 1..48 225 97.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:47:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:45:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28671287..28672025 448..1186 3695 100 Plus
3R 32079331 3R 28670838..28671236 49..447 1995 100 Plus
3R 32079331 3R 28670736..28670783 1..48 240 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:34:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 28412118..28412856 448..1186 3695 100 Plus
3R 31820162 3R 28411669..28412067 49..447 1995 100 Plus
3R 31820162 3R 28411567..28411614 1..48 240 100 Plus
Blast to na_te.dros performed on 2019-03-16 18:45:30 has no hits.

LP02841.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:46:24 Download gff for LP02841.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 24493810..24493857 1..48 97 -> Plus
chr3R 24493912..24494310 49..447 99 -> Plus
chr3R 24494361..24495095 448..1182 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:34:18 Download gff for LP02841.complete
Subject Subject Range Query Range Percent Splice Strand
CG9989-RA 1..1113 3..1115 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:43:33 Download gff for LP02841.complete
Subject Subject Range Query Range Percent Splice Strand
CG9989-RA 1..1113 3..1115 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:25:54 Download gff for LP02841.complete
Subject Subject Range Query Range Percent Splice Strand
CG9989-RA 1..1113 3..1115 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:35:44 Download gff for LP02841.complete
Subject Subject Range Query Range Percent Splice Strand
CG9989-RA 1..1113 3..1115 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:49:39 Download gff for LP02841.complete
Subject Subject Range Query Range Percent Splice Strand
CG9989-RA 1..1113 3..1115 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:18:10 Download gff for LP02841.complete
Subject Subject Range Query Range Percent Splice Strand
CG9989-RA 1..1182 1..1182 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:43:33 Download gff for LP02841.complete
Subject Subject Range Query Range Percent Splice Strand
CG9989-RA 1..1182 1..1182 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:54 Download gff for LP02841.complete
Subject Subject Range Query Range Percent Splice Strand
CG9989-RA 33..1214 1..1182 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:35:44 Download gff for LP02841.complete
Subject Subject Range Query Range Percent Splice Strand
CG9989-RA 1..1182 1..1182 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:49:39 Download gff for LP02841.complete
Subject Subject Range Query Range Percent Splice Strand
CG9989-RA 33..1214 1..1182 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:46:24 Download gff for LP02841.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28670736..28670783 1..48 100 -> Plus
3R 28670838..28671236 49..447 100 -> Plus
3R 28671287..28672021 448..1182 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:46:24 Download gff for LP02841.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28670736..28670783 1..48 100 -> Plus
3R 28670838..28671236 49..447 100 -> Plus
3R 28671287..28672021 448..1182 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:46:24 Download gff for LP02841.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28670736..28670783 1..48 100 -> Plus
3R 28670838..28671236 49..447 100 -> Plus
3R 28671287..28672021 448..1182 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:54 Download gff for LP02841.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24496458..24496505 1..48 100 -> Plus
arm_3R 24496560..24496958 49..447 100 -> Plus
arm_3R 24497009..24497743 448..1182 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:08:05 Download gff for LP02841.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28411669..28412067 49..447 100 -> Plus
3R 28412118..28412852 448..1182 100   Plus
3R 28411567..28411614 1..48 100 -> Plus

LP02841.pep Sequence

Translation from 2 to 1114

> LP02841.pep
MPDLKYMLTILSLYFFVGSVQANCLIDLAHLNANYVYLSQNNGVYDIQRS
DIVEIHQTLYLLCNGGLHRTTFLCRYDSVFSPALSSAACAPPDPVVVKVP
DTSCSIPSATFAVGFSFNGRFMELYRNCFDGYSLAFQHSIYKAYRYVNTV
PRPNPTWQSDQLSGGFDNAYEGRATQACLLTNLGAVQPQCKFDRGHMTPA
SAFISTELKKSTFRYLNAIPQYRGVNRGKWKAVETWVNNMVRGLYDNPII
NNVQIPRTYDVLKVCIGALGVHRLRHNTNNNMIPIYLLDNNKIPVPEWMY
KIVSHLSGDKWVMLTYNDVSLPNQQALNQICHVIPCHPGLNLNTKDVGHT
VCCDPYRFITINAPHLTGVC*

LP02841.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:07:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12781-PA 348 GF12781-PA 15..346 16..358 334 29.9 Plus
Dana\GF19869-PA 250 GF19869-PA 4..250 113..370 298 32.7 Plus
Dana\GF16434-PA 351 GF16434-PA 2..349 4..358 268 25.3 Plus
Dana\GF16433-PA 242 GF16433-PA 2..240 111..358 237 26.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:07:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11608-PA 370 GG11608-PA 1..370 1..370 1630 82.4 Plus
Dere\GG11607-PA 369 GG11607-PA 1..369 1..370 1420 72.2 Plus
Dere\GG11606-PA 270 GG11606-PA 3..270 1..280 357 33.6 Plus
Dere\GG24146-PA 351 GG24146-PA 6..349 4..358 327 27.4 Plus
Dere\GG12061-PA 346 GG12061-PA 5..344 10..358 287 26.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:07:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17237-PA 302 GH17237-PA 13..302 74..370 412 32.6 Plus
Dgri\GH16212-PA 255 GH16212-PA 2..255 111..370 383 32 Plus
Dgri\GH16223-PA 305 GH16223-PA 1..302 61..370 380 30.8 Plus
Dgri\GH18692-PA 332 GH18692-PA 7..330 38..358 329 32.5 Plus
Dgri\GH23404-PA 332 GH23404-PA 7..330 38..358 317 31.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:52
Subject Length Description Subject Range Query Range Score Percent Strand
Sid-PA 370 CG9989-PA 1..370 1..370 2015 100 Plus
CG33346-PB 364 CG33346-PB 3..357 1..370 489 33.2 Plus
CG12917-PB 356 CG12917-PB 7..354 3..358 335 27.7 Plus
CG14062-PB 346 CG14062-PB 5..344 10..358 304 28 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19315-PA 347 GI19315-PA 1..345 4..358 321 26.6 Plus
Dmoj\GI22179-PA 301 GI22179-PA 13..301 74..370 316 29.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23183-PA 258 GL23183-PA 2..258 111..370 434 36.2 Plus
Dper\GL11579-PA 371 GL11579-PA 65..369 41..358 325 30.2 Plus
Dper\GL13696-PA 356 GL13696-PA 5..350 2..354 310 26.4 Plus
Dper\GL13697-PA 351 GL13697-PA 38..332 47..354 302 27.6 Plus
Dper\GL13695-PA 329 GL13695-PA 44..327 47..358 200 27.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:07:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27180-PA 258 GA27180-PA 2..258 111..370 436 36.2 Plus
Dpse\GA11906-PA 320 GA11906-PA 15..318 42..358 322 30.3 Plus
Dpse\GA26995-PA 356 GA26995-PA 5..350 2..354 303 26.2 Plus
Dpse\GA26996-PB 369 GA26996-PB 7..350 4..354 301 25.2 Plus
Dpse\GA12733-PA 346 GA12733-PA 44..344 47..358 287 30.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:07:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12732-PA 370 GM12732-PA 1..370 1..370 1812 94.6 Plus
Dsec\GM12731-PA 357 GM12731-PA 3..357 1..370 470 34.4 Plus
Dsec\GM21190-PA 320 GM21190-PA 2..318 38..358 329 29 Plus
Dsec\GM12290-PA 346 GM12290-PA 39..344 42..358 295 29.1 Plus
Dsec\GM12291-PA 351 GM12291-PA 2..349 3..358 231 23.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:07:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21378-PA 370 GD21378-PA 1..370 1..370 1766 92.7 Plus
Dsim\GD10718-PA 325 GD10718-PA 2..323 38..358 344 30 Plus
Dsim\GD21377-PA 275 GD21377-PA 3..264 1..274 329 31.7 Plus
Dsim\GD18024-PA 346 GD18024-PA 39..344 42..358 292 28.8 Plus
Dsim\GD18025-PA 351 GD18025-PA 2..349 3..358 230 23.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:07:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24298-PA 514 GJ24298-PA 168..514 16..370 399 29.7 Plus
Dvir\GJ22194-PA 320 GJ22194-PA 4..318 32..358 289 26.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:07:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10992-PA 255 GK10992-PA 2..254 111..369 356 31.6 Plus
Dwil\GK18004-PA 321 GK18004-PA 14..319 41..358 308 29.6 Plus
Dwil\GK10989-PA 349 GK10989-PA 12..347 10..358 308 27.2 Plus
Dwil\GK10991-PA 350 GK10991-PA 21..348 21..358 297 26.1 Plus
Dwil\GK17844-PA 268 GK17844-PA 2..246 111..358 236 29.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:07:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23796-PA 373 GE23796-PA 1..373 1..370 1554 77.5 Plus
Dyak\GE10504-PA 251 GE10504-PA 2..250 111..369 437 38.5 Plus
Dyak\GE19342-PA 320 GE19342-PA 15..318 42..358 330 29.8 Plus
Dyak\GE10502-PA 346 GE10502-PA 5..344 10..358 298 28.3 Plus
Dyak\GE10503-PA 351 GE10503-PA 7..349 10..358 242 24.6 Plus

LP02841.hyp Sequence

Translation from 2 to 1114

> LP02841.hyp
MPDLKYMLTILSLYFFVGSVQANCLIDLAHLNANYVYLSQNNGVYDIQRS
DIVEIHQTLYLLCNGGLHRTTFLCRYDSVFSPALSSAACAPPDPVVVKVP
DTSCSIPSATFAVGFSFNGRFMELYRNCFDGYSLAFQHSIYKAYRYVNTV
PRPNPTWQSDQLSGGFDNAYEGRATQACLLTNLGAVQPQCKFDRGHMTPA
SAFISTELKKSTFRYLNAIPQYRGVNRGKWKAVETWVNNMVRGLYDNPII
NNVQIPRTYDVLKVCIGALGVHRLRHNTNNNMIPIYLLDNNKIPVPEWMY
KIVSHLSGDKWVMLTYNDVSLPNQQALNQICHVIPCHPGLNLNTKDVGHT
VCCDPYRFITINAPHLTGVC*

LP02841.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG9989-PA 370 CG9989-PA 1..370 1..370 2015 100 Plus
CG33346-PB 364 CG33346-PB 3..357 1..370 489 33.2 Plus
CG12917-PB 356 CG12917-PB 7..354 3..358 335 27.7 Plus
CG14062-PB 346 CG14062-PB 5..344 10..358 304 28 Plus