Clone LP02893 Report

Search the DGRC for LP02893

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:28
Well:93
Vector:pOT2
Associated Gene/Transcriptru-RA
Protein status:LP02893.pep: gold
Sequenced Size:1816

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1214 2002-01-01 Sim4 clustering to Release 2
CG1214 2002-05-18 Blastp of sequenced clone
CG1214 2003-01-01 Sim4 clustering to Release 3
ru 2008-04-29 Release 5.5 accounting
ru 2008-08-15 Release 5.9 accounting
ru 2008-12-18 5.12 accounting

Clone Sequence Records

LP02893.complete Sequence

1816 bp (1816 high quality bases) assembled on 2002-05-18

GenBank Submission: AY118997

> LP02893.complete
TAACGGCAACCGGCGGCAGCACGCGCAACTAACGGTTCACTGGAAAAGTA
GAGAAAAACCACCGAGGAAAAACTTAGTGGAAAAGCACCGAACATTCGTA
CCGTTCGTAGCATTTACTGCTCGGATCGACTGCCGCAGTAACTTGTCGCT
CATCCTCGAAAGAAATAAAAAATAGAAGCTGCAACCAGTTCACATAATCC
TGCCCCCCCCGGATGGCCTGCACAAGAGTCAACCATTTCATCACCCCCCT
CGACAGCCGCCGCCGGGAGTAGACAGCATTCCGCTCATCTCACCATGACA
GAAGCCGCCTCAGCCTCAGATGCTCCTGCTAAGTGGGGCACCGTCACAAG
GCAGACGCCCCAAAAATAGACCCCTCATCGGAACGGTGGAGGAGGGGGAG
ATGCCGCCCAGTACCGTTCTGCAAATGCCGCCGGCTCCGTTGTCATCGAA
ATCCGGACTGGTGCTGGGCGTCTGCTGTGACCAGCTGATGGCGGTGCAGC
CAGTGCAACGGGCATCCGGAGCAGCAGCAACCAAGAGCAATTCCCCGGAT
TGGGGGAATCACAGGGCGAAACATCATGAAGGGTCTGCCGCGCCTTTCAA
GTGGATTCCGCCCTTTTTCATTATCCTCGCCACGCTCCTTGAGGTTCTCG
TGTTTCTATGGGTGGGTGCTGATCCACCAGAGGATTCTCTTCTGGTATAT
CGACCCGACCAGCGCCTGCAGCTCTGGAGATTCCTTAGCTATGCCCTGCT
CCACGCCAGTTGGCTCCATCTGGGTTACAATGTGCTCACTCAGCTCCTGT
TCGGTGTGCCATTGGAGCTGGTACATGGATCGCTGAGAACGGGAGTCATT
TATATGGCCGGAGTTTTGGCTGGCTCTTTGGGAACTTCGGTGGTGGACTC
GGAAGTTTTTCTGGTGGGAGCCAGTGGAGGAGTTTACGCCTTGCTGGCCG
CCCAACTGGCGAGTCTTTTGCTCAACTTTGGTCAAATGAGACACGGGGTA
ATTCAGCTAATGGCTGTGATTTTGTTCGTTTTCTGCGATTTGGGGTATGC
CCTCTATTCAAGAGAACTGGCAATGCATCAGCTGCAGACACGACCCTCTG
TCTCCTATATCGCTCACATGACCGGTGCTCTGGCCGGGATTAGTGTGGGT
CTGCTGCTTCTCCGGCAACTGGATGGTGGGCTGCGACCACGCCCACTCCG
CTGGTTGGCCCTGGGCGTATGGTGCATATTCAGCGCCTTTGGAATCGCCT
TCAACTTGGTGAATACGGTCACAGCTCAACTTCTGGCCGAGGAGGAGGGC
CAGGTGATCAGGCAGCATCTGATGAATGACCTCGGAATGGGATGATTCCC
CAGACGGAAGCCATAGACTGCATCCCGTTCACATACACTCACTCCTCTTA
AATGTCTCCTCTTATGCCCTAGTCTAGTCACTAGATTATAAGACTTTTCC
CAGGACAGTGTGCTCAAATAACATATCTATCGTCTATCGGATATCCTGGC
TCCCACTTCAAACGGGGATTCGCTCAAAATACTCTTAGCTCGTAAGTCCC
AACATTTATCTTATGCCAATGCCAAAGGAGTGGAGAGGTTCCTGCCGGGA
ACTGAGCCTGGCTCACATCAAAGACTAAGGATCGGGTTTGGATTGCTATC
GATGCTGATCGATTGTCCATTGAGTTGCCTACTTAGGCTTAATGCCAAAC
CAGAGCTTAAAGACATAATAACATACATATTATAACTCCAGATACAATTA
TTTGAAACAAGAAATCTAACTCAATAAATTACCAAACTATAGAGAGTAAA
AAAAAAAAAAAAAAAA

LP02893.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:02:31
Subject Length Description Subject Range Query Range Score Percent Strand
ru-RA 1866 ru-RA 41..1840 1..1800 9000 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:14:19
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 1386196..1386968 1028..1797 3725 99.1 Plus
chr3L 24539361 chr3L 1383966..1384359 252..645 1850 98 Plus
chr3L 24539361 chr3L 1385738..1386124 642..1028 1770 97.2 Plus
chr3L 24539361 chr3L 1370169..1370420 1..252 1170 97.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:47:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:14:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1386668..1387440 1028..1800 3865 100 Plus
3L 28110227 3L 1384449..1384842 252..645 1970 100 Plus
3L 28110227 3L 1386210..1386596 642..1028 1935 100 Plus
3L 28110227 3L 1370629..1370880 1..252 1260 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:34:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 1386668..1387440 1028..1800 3865 100 Plus
3L 28103327 3L 1384449..1384842 252..645 1970 100 Plus
3L 28103327 3L 1386210..1386596 642..1028 1935 100 Plus
3L 28103327 3L 1370629..1370880 1..252 1260 100 Plus
Blast to na_te.dros performed on 2019-03-15 16:14:17 has no hits.

LP02893.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:15:26 Download gff for LP02893.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 1370169..1370420 1..252 97 -> Plus
chr3L 1383967..1384357 253..643 97 -> Plus
chr3L 1385740..1386124 644..1028 97 -> Plus
chr3L 1386197..1386968 1029..1797 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:13:27 Download gff for LP02893.complete
Subject Subject Range Query Range Percent Splice Strand
ru-RA 1..1026 320..1345 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:43:34 Download gff for LP02893.complete
Subject Subject Range Query Range Percent Splice Strand
ru-RA 1..1026 320..1345 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:56:38 Download gff for LP02893.complete
Subject Subject Range Query Range Percent Splice Strand
ru-RA 1..1026 320..1345 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:35:45 Download gff for LP02893.complete
Subject Subject Range Query Range Percent Splice Strand
ru-RA 1..1026 320..1345 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:30:13 Download gff for LP02893.complete
Subject Subject Range Query Range Percent Splice Strand
ru-RA 1..1026 320..1345 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:13:26 Download gff for LP02893.complete
Subject Subject Range Query Range Percent Splice Strand
ru-RA 10..1804 1..1795 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:43:34 Download gff for LP02893.complete
Subject Subject Range Query Range Percent Splice Strand
ru-RA 10..1804 1..1795 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:56:38 Download gff for LP02893.complete
Subject Subject Range Query Range Percent Splice Strand
ru-RA 2..1798 1..1797 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:35:45 Download gff for LP02893.complete
Subject Subject Range Query Range Percent Splice Strand
ru-RA 10..1804 1..1795 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:30:13 Download gff for LP02893.complete
Subject Subject Range Query Range Percent Splice Strand
ru-RA 2..1798 1..1797 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:15:26 Download gff for LP02893.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1370629..1370880 1..252 100 -> Plus
3L 1384450..1384840 253..643 100 -> Plus
3L 1386212..1386596 644..1028 100 -> Plus
3L 1386669..1387437 1029..1797 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:15:26 Download gff for LP02893.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1370629..1370880 1..252 100 -> Plus
3L 1384450..1384840 253..643 100 -> Plus
3L 1386212..1386596 644..1028 100 -> Plus
3L 1386669..1387437 1029..1797 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:15:26 Download gff for LP02893.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1370629..1370880 1..252 100 -> Plus
3L 1384450..1384840 253..643 100 -> Plus
3L 1386212..1386596 644..1028 100 -> Plus
3L 1386669..1387437 1029..1797 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:56:38 Download gff for LP02893.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1370629..1370880 1..252 100 -> Plus
arm_3L 1384450..1384840 253..643 100 -> Plus
arm_3L 1386212..1386596 644..1028 100 -> Plus
arm_3L 1386669..1387437 1029..1797 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:08:06 Download gff for LP02893.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1370629..1370880 1..252 100 -> Plus
3L 1384450..1384840 253..643 100 -> Plus
3L 1386212..1386596 644..1028 100 -> Plus
3L 1386669..1387437 1029..1797 100   Plus

LP02893.pep Sequence

Translation from 319 to 1344

> LP02893.pep
MLLLSGAPSQGRRPKNRPLIGTVEEGEMPPSTVLQMPPAPLSSKSGLVLG
VCCDQLMAVQPVQRASGAAATKSNSPDWGNHRAKHHEGSAAPFKWIPPFF
IILATLLEVLVFLWVGADPPEDSLLVYRPDQRLQLWRFLSYALLHASWLH
LGYNVLTQLLFGVPLELVHGSLRTGVIYMAGVLAGSLGTSVVDSEVFLVG
ASGGVYALLAAQLASLLLNFGQMRHGVIQLMAVILFVFCDLGYALYSREL
AMHQLQTRPSVSYIAHMTGALAGISVGLLLLRQLDGGLRPRPLRWLALGV
WCIFSAFGIAFNLVNTVTAQLLAEEEGQVIRQHLMNDLGMG*

LP02893.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:20:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24760-PA 352 GF24760-PA 31..352 24..341 1253 78.9 Plus
Dana\rho-PA 365 GF24766-PA 112..364 98..340 732 55.1 Plus
Dana\GF25034-PA 485 GF25034-PA 221..461 97..315 616 50.6 Plus
Dana\GF21300-PA 418 GF21300-PA 179..406 97..313 415 36.9 Plus
Dana\GF15679-PA 260 GF15679-PA 44..253 61..284 286 30.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:20:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14787-PA 349 GG14787-PA 1..349 1..341 1498 90.3 Plus
Dere\GG14792-PA 353 GG14792-PA 100..352 98..340 743 55.5 Plus
Dere\GG14598-PA 485 GG14598-PA 221..461 97..315 626 51.9 Plus
Dere\GG18433-PA 417 GG18433-PA 178..405 97..313 418 36.9 Plus
Dere\GG10271-PA 263 GG10271-PA 69..254 95..285 296 32.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:20:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16237-PA 321 GH16237-PA 6..319 31..340 1043 67.8 Plus
Dgri\GH16240-PA 436 GH16240-PA 171..435 98..340 719 53.4 Plus
Dgri\GH15206-PA 476 GH15206-PA 220..455 97..318 606 50 Plus
Dgri\GH24104-PA 420 GH24104-PA 181..408 97..313 403 35.2 Plus
Dgri\GH11182-PA 229 GH11182-PA 44..229 94..284 292 34 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:13:56
Subject Length Description Subject Range Query Range Score Percent Strand
ru-PA 341 CG1214-PA 1..341 1..341 1756 100 Plus
rho-PB 355 CG1004-PB 28..354 24..340 740 46.7 Plus
rho-PA 355 CG1004-PA 28..354 24..340 740 46.7 Plus
stet-PA 330 CG33166-PA 66..306 97..315 626 51.9 Plus
stet-PB 485 CG33166-PB 221..461 97..315 626 51.9 Plus
rho-4-PB 417 CG1697-PB 178..405 97..313 427 36.9 Plus
rho-4-PA 417 CG1697-PA 178..405 97..313 427 36.9 Plus
rho-6-PB 263 CG17212-PB 69..253 95..284 317 32.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:20:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16665-PA 311 GI16665-PA 3..309 28..340 952 66.2 Plus
Dmoj\GI16668-PA 398 GI16668-PA 142..398 98..341 732 55.4 Plus
Dmoj\GI16724-PA 476 GI16724-PA 220..455 97..318 614 51.3 Plus
Dmoj\GI14374-PA 420 GI14374-PA 181..408 97..313 421 36.9 Plus
Dmoj\GI15831-PA 242 GI15831-PA 54..237 98..286 262 31.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:20:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22503-PA 344 GL22503-PA 4..344 28..341 1114 67.2 Plus
Dper\GL22587-PA 487 GL22587-PA 222..485 97..338 621 47.5 Plus
Dper\GL22508-PA 342 GL22508-PA 136..341 120..340 499 50.5 Plus
Dper\GL26733-PA 417 GL26733-PA 178..405 97..313 410 35.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:20:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11431-PA 336 GA11431-PA 4..336 28..341 1130 69.6 Plus
Dpse\rho-PA 365 GA10027-PA 136..364 120..340 716 59.6 Plus
Dpse\GA17336-PA 487 GA17336-PA 222..485 97..338 612 46.8 Plus
Dpse\GA14244-PA 417 GA14244-PA 178..405 97..313 410 35.6 Plus
Dpse\GA14394-PA 252 GA14394-PA 62..250 95..288 239 32.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:20:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14406-PA 344 GM14406-PA 1..344 1..341 1694 95.6 Plus
Dsec\ve-PA 364 GM14413-PA 48..363 27..340 750 46.8 Plus
Dsec\GM14213-PA 485 GM14213-PA 221..461 97..315 631 52.3 Plus
Dsec\GM13096-PA 417 GM13096-PA 178..405 97..313 421 37.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:20:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13615-PA 344 GD13615-PA 1..344 1..341 1702 96.2 Plus
Dsim\GD13619-PA 355 GD13619-PA 64..354 52..340 748 50.3 Plus
Dsim\GD13475-PA 485 GD13475-PA 221..461 97..315 633 52.3 Plus
Dsim\GD17034-PA 382 GD17034-PA 143..370 97..313 418 36.9 Plus
Dsim\GD22127-PA 267 GD22127-PA 73..257 95..284 308 32.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:20:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12917-PA 314 GJ12917-PA 1..312 28..340 989 66.1 Plus
Dvir\rho-PA 401 GJ12920-PA 145..401 98..341 736 55.8 Plus
Dvir\GJ12468-PA 476 GJ12468-PA 220..455 97..318 607 51.3 Plus
Dvir\GJ10319-PA 246 GJ10319-PA 49..232 95..283 275 33.9 Plus
Dvir\GJ19413-PA 350 GJ19413-PA 181..299 97..200 150 28.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:20:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16979-PA 315 GK16979-PA 7..314 42..340 903 63.7 Plus
Dwil\GK16984-PA 391 GK16984-PA 68..390 51..340 745 47.9 Plus
Dwil\GK17206-PA 475 GK17206-PA 219..473 97..338 593 46.9 Plus
Dwil\GK15930-PA 418 GK15930-PA 179..406 97..313 417 36.5 Plus
Dwil\GK14633-PA 257 GK14633-PA 68..232 95..266 249 33.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:20:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21150-PA 343 GE21150-PA 1..343 1..341 1538 92.7 Plus
Dyak\GE21154-PA 355 GE21154-PA 102..354 98..340 735 55.1 Plus
Dyak\GE20958-PA 485 GE20958-PA 221..461 97..315 632 52.3 Plus
Dyak\GE15951-PA 417 GE15951-PA 178..405 97..313 418 36.9 Plus
Dyak\GE12391-PA 263 GE12391-PA 69..254 95..285 286 32.5 Plus

LP02893.hyp Sequence

Translation from 319 to 1344

> LP02893.hyp
MLLLSGAPSQGRRPKNRPLIGTVEEGEMPPSTVLQMPPAPLSSKSGLVLG
VCCDQLMAVQPVQRASGAAATKSNSPDWGNHRAKHHEGSAAPFKWIPPFF
IILATLLEVLVFLWVGADPPEDSLLVYRPDQRLQLWRFLSYALLHASWLH
LGYNVLTQLLFGVPLELVHGSLRTGVIYMAGVLAGSLGTSVVDSEVFLVG
ASGGVYALLAAQLASLLLNFGQMRHGVIQLMAVILFVFCDLGYALYSREL
AMHQLQTRPSVSYIAHMTGALAGISVGLLLLRQLDGGLRPRPLRWLALGV
WCIFSAFGIAFNLVNTVTAQLLAEEEGQVIRQHLMNDLGMG*

LP02893.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:01:22
Subject Length Description Subject Range Query Range Score Percent Strand
ru-PA 341 CG1214-PA 1..341 1..341 1756 100 Plus
rho-PB 355 CG1004-PB 28..354 24..340 740 46.7 Plus
rho-PA 355 CG1004-PA 28..354 24..340 740 46.7 Plus
stet-PA 330 CG33166-PA 66..306 97..315 626 51.9 Plus
stet-PB 485 CG33166-PB 221..461 97..315 626 51.9 Plus