Clone LP02978 Report

Search the DGRC for LP02978

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:29
Well:78
Vector:pOT2
Associated Gene/TranscriptCG6933-RB
Protein status:LP02978.pep: gold
Preliminary Size:1342
Sequenced Size:1261

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6933 2001-01-01 Release 2 assignment
CG6933 2002-06-12 Blastp of sequenced clone
CG6933 2003-01-01 Sim4 clustering to Release 3
CG6933 2008-04-29 Release 5.5 accounting
CG6933 2008-08-15 Release 5.9 accounting
CG6933 2008-12-18 5.12 accounting

Clone Sequence Records

LP02978.complete Sequence

1261 bp (1261 high quality bases) assembled on 2002-06-12

GenBank Submission: AY122205

> LP02978.complete
GGAACGTTCGCTTCGGTCGTCTGTCTATCAAGTGAATTTGTCCCCGAAAA
ATATTAGCATTCCAAGATGGGAGCAATCAATATGAGGATCTGTGTCGTGG
CCGCATGTCTCCTAATGGCATCGCAGGCCACCGGCTACACGATGGATGAT
CTGTGCCAACAGTGGTCGGGCTATGGATACATCGGCAATCCGAGCAACTG
CCATGCCTGGGGATACTGCAAGAACCAGGAGGTTGTGGCCTGGGGCACCT
GTCCCAACGGCTTGGTGTTCAACGCGCAGGCCGGCAGCTGTGATTACGCT
AATACCACGGTGTGCTCCACCAGTGCCGTTGAGACATGCTCCAACGTCAA
ATCTCCCATGTATGTGGCCAATCCGTTGAACTGCACCGAATACGCCTACT
GCGATGGCACAGGCCAAATCTCCTATGGCGATTGCGGCACCGGCGGCGTC
TATTCGGCATCCTCCACAAAATGTATATGGGGACCCGCCTGCCCGCAGGA
CACCATCTGTCGGTTCATGTTGTCCAACATCTTTGTAGGCGATCCGAACC
AGTGCGGCAACTACATCAACTGCGTCAACGGCTATGGCACTTCCGAAAAA
TGTTCCAGCACCGCCAATCCCTACTATAATAAAGCCACTGGCAACTGCCA
GTCGACGAATCCGTGCACCGGCGAAGATTCAAACAGTGGAAACTCTGACC
AGTTCACTGTTGGGCAAACAAATGCAACTGCTTGTGACGAAGAAGCTTTT
AAAGCAGCAGATCCACTTACTGTAAATGGGGAATCTGTTGACTATAGGTA
CGTTTCTGATGGTGTCACCTGCTATGGGTACTACTACTGTGCAGCAGTAA
ACGCCACTGGCTATTGGAACCAATGTCCCACCGGTACCCAATTCAATGCT
GGCAAGTGCGTTTCGCCAGCCTCCTTTGTCTGTACCCATAACCGATGTGG
GAACGTTAACAATCCATTCATGGCAGATGAGGGTTGCAAGAACTACACAA
TCTGCTCCAGCGGAATAACCGGATCATGTCCCACCAATGCGCCGTACTAC
GACGAGGTGAACAATATCTGCACCACCAAAATTCCCGATTACGCCATTTG
TAATTCGACGGCTAGTACATGAGCATCTCCTCCAGCCACGTCTGTTTGCC
GAGATACCTTTTATGAAATATATAAATAAATACCAATGCTGAAGGCATTC
AAAAGAAACTAATAAAAATGTTGACTTCGGCCAAGAAAAAAAAAAAAAAA
AAAAAAAAAAA

LP02978.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:47:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG6933-RB 1481 CG6933-RB 241..1475 1..1235 6160 99.9 Plus
CG6933-RC 1401 CG6933-RC 236..1399 72..1235 5805 99.9 Plus
CG6933.a 1416 CG6933.a 251..1414 72..1235 5805 99.9 Plus
CG6933-RC 1401 CG6933-RC 129..201 1..73 365 100 Plus
CG6933.a 1416 CG6933.a 144..216 1..73 365 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:33:04
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20207681..20208844 1235..72 5790 99.8 Minus
chr3L 24539361 chr3L 20209276..20209348 73..1 365 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:47:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:33:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20218502..20219665 1235..72 5805 99.9 Minus
3L 28110227 3L 20220097..20220169 73..1 365 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:20:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20211602..20212765 1235..72 5805 99.9 Minus
3L 28103327 3L 20213197..20213269 73..1 365 100 Minus
Blast to na_te.dros performed on 2019-03-15 22:33:03 has no hits.

LP02978.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:33:49 Download gff for LP02978.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20207681..20208842 74..1235 99 <- Minus
chr3L 20209276..20209348 1..73 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:34:26 Download gff for LP02978.complete
Subject Subject Range Query Range Percent Splice Strand
CG6933-RB 1..1056 67..1122 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:22:07 Download gff for LP02978.complete
Subject Subject Range Query Range Percent Splice Strand
CG6933-RB 1..1056 67..1122 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:24:37 Download gff for LP02978.complete
Subject Subject Range Query Range Percent Splice Strand
CG6933-RB 1..1056 67..1122 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:12:55 Download gff for LP02978.complete
Subject Subject Range Query Range Percent Splice Strand
CG6933-RB 1..1056 67..1122 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:27:38 Download gff for LP02978.complete
Subject Subject Range Query Range Percent Splice Strand
CG6933-RB 1..1056 67..1122 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:48:34 Download gff for LP02978.complete
Subject Subject Range Query Range Percent Splice Strand
CG6933-RB 12..1246 1..1235 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:22:07 Download gff for LP02978.complete
Subject Subject Range Query Range Percent Splice Strand
CG6933-RB 12..1246 1..1235 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:24:37 Download gff for LP02978.complete
Subject Subject Range Query Range Percent Splice Strand
CG6933-RB 12..1246 1..1235 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:12:55 Download gff for LP02978.complete
Subject Subject Range Query Range Percent Splice Strand
CG6933-RB 12..1246 1..1235 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:27:38 Download gff for LP02978.complete
Subject Subject Range Query Range Percent Splice Strand
CG6933-RB 12..1246 1..1235 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:33:49 Download gff for LP02978.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20218502..20219663 74..1235 99 <- Minus
3L 20220097..20220169 1..73 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:33:49 Download gff for LP02978.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20218502..20219663 74..1235 99 <- Minus
3L 20220097..20220169 1..73 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:33:49 Download gff for LP02978.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20218502..20219663 74..1235 99 <- Minus
3L 20220097..20220169 1..73 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:24:37 Download gff for LP02978.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20211602..20212763 74..1235 99 <- Minus
arm_3L 20213197..20213269 1..73 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:45:39 Download gff for LP02978.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20211602..20212763 74..1235 99 <- Minus
3L 20213197..20213269 1..73 100   Minus

LP02978.hyp Sequence

Translation from 66 to 1121

> LP02978.hyp
MGAINMRICVVAACLLMASQATGYTMDDLCQQWSGYGYIGNPSNCHAWGY
CKNQEVVAWGTCPNGLVFNAQAGSCDYANTTVCSTSAVETCSNVKSPMYV
ANPLNCTEYAYCDGTGQISYGDCGTGGVYSASSTKCIWGPACPQDTICRF
MLSNIFVGDPNQCGNYINCVNGYGTSEKCSSTANPYYNKATGNCQSTNPC
TGEDSNSGNSDQFTVGQTNATACDEEAFKAADPLTVNGESVDYRYVSDGV
TCYGYYYCAAVNATGYWNQCPTGTQFNAGKCVSPASFVCTHNRCGNVNNP
FMADEGCKNYTICSSGITGSCPTNAPYYDEVNNICTTKIPDYAICNSTAS
T*

LP02978.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:16:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG6933-PE 351 CG6933-PE 1..351 1..351 1992 100 Plus
CG6933-PB 351 CG6933-PB 1..351 1..351 1992 100 Plus
CG6933-PA 351 CG6933-PA 1..351 1..351 1984 99.7 Plus
CG6933-PD 363 CG6933-PD 13..363 1..351 1982 99.4 Plus
CG6933-PC 363 CG6933-PC 13..363 1..351 1982 99.4 Plus

LP02978.pep Sequence

Translation from 66 to 1121

> LP02978.pep
MGAINMRICVVAACLLMASQATGYTMDDLCQQWSGYGYIGNPSNCHAWGY
CKNQEVVAWGTCPNGLVFNAQAGSCDYANTTVCSTSAVETCSNVKSPMYV
ANPLNCTEYAYCDGTGQISYGDCGTGGVYSASSTKCIWGPACPQDTICRF
MLSNIFVGDPNQCGNYINCVNGYGTSEKCSSTANPYYNKATGNCQSTNPC
TGEDSNSGNSDQFTVGQTNATACDEEAFKAADPLTVNGESVDYRYVSDGV
TCYGYYYCAAVNATGYWNQCPTGTQFNAGKCVSPASFVCTHNRCGNVNNP
FMADEGCKNYTICSSGITGSCPTNAPYYDEVNNICTTKIPDYAICNSTAS
T*

LP02978.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:48:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24478-PA 354 GF24478-PA 1..347 1..345 920 53.1 Plus
Dana\GF24502-PA 329 GF24502-PA 1..325 16..345 498 32.8 Plus
Dana\GF25312-PA 347 GF25312-PA 4..337 7..351 216 25.3 Plus
Dana\GF25314-PA 336 GF25314-PA 30..326 27..339 189 24 Plus
Dana\GF25313-PA 317 GF25313-PA 30..316 27..345 185 25.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:48:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13333-PA 360 GG13333-PA 13..360 1..346 1384 75.6 Plus
Dere\GG13872-PA 411 GG13872-PA 79..407 11..345 520 31 Plus
Dere\GG16084-PA 352 GG16084-PA 1..337 4..351 241 27.1 Plus
Dere\GG16087-PA 333 GG16087-PA 27..333 27..346 186 25 Plus
Dere\GG13869-PA 322 GG13869-PA 1..322 15..347 178 24.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:48:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15114-PA 309 GH15114-PA 1..309 26..351 683 43.6 Plus
Dgri\GH16715-PA 329 GH16715-PA 1..325 26..345 496 36.6 Plus
Dgri\GH16336-PA 324 GH16336-PA 1..304 39..351 236 26 Plus
Dgri\GH14443-PA 346 GH14443-PA 11..346 8..346 223 26.4 Plus
Dgri\GH15115-PA 336 GH15115-PA 8..334 25..345 199 25.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:06:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG6933-PE 351 CG6933-PE 1..351 1..351 1992 100 Plus
CG6933-PB 351 CG6933-PB 1..351 1..351 1992 100 Plus
CG6933-PA 351 CG6933-PA 1..351 1..351 1984 99.7 Plus
CG6933-PD 363 CG6933-PD 13..363 1..351 1982 99.4 Plus
CG6933-PC 363 CG6933-PC 13..363 1..351 1982 99.4 Plus
CG5897-PC 343 CG5897-PC 10..339 8..345 610 34.8 Plus
CG6996-PC 364 CG6996-PC 38..337 39..351 303 26.1 Plus
CG6996-PB 364 CG6996-PB 38..337 39..351 303 26.1 Plus
CG17145-PB 334 CG17145-PB 10..334 10..347 292 25.8 Plus
CG17145-PA 334 CG17145-PA 10..334 10..347 292 25.8 Plus
CG17147-PB 337 CG17147-PB 2..327 4..339 256 24.4 Plus
CG5883-PA 339 CG5883-PA 32..339 27..347 241 25.1 Plus
CG43896-PB 1324 CG43896-PB 431..765 44..346 236 27.4 Plus
CG43896-PD 2113 CG43896-PD 431..765 44..346 236 27.4 Plus
CG43896-PC 2113 CG43896-PC 431..765 44..346 236 27.4 Plus
CG7290-PB 419 CG7290-PB 12..346 8..350 213 22.8 Plus
CG7290-PA 419 CG7290-PA 12..346 8..350 213 22.8 Plus
CG43896-PB 1324 CG43896-PB 40..315 42..317 212 25.6 Plus
CG43896-PD 2113 CG43896-PD 40..315 42..317 212 25.6 Plus
CG43896-PC 2113 CG43896-PC 40..315 42..317 212 25.6 Plus
CG43896-PB 1324 CG43896-PB 498..824 39..350 207 23.2 Plus
CG43896-PD 2113 CG43896-PD 498..824 39..350 207 23.2 Plus
CG43896-PC 2113 CG43896-PC 498..824 39..350 207 23.2 Plus
CG43896-PB 1324 CG43896-PB 194..536 11..341 205 24 Plus
CG43896-PD 2113 CG43896-PD 194..536 11..341 205 24 Plus
CG43896-PC 2113 CG43896-PC 194..536 11..341 205 24 Plus
CG7290-PB 419 CG7290-PB 158..364 28..220 191 26.3 Plus
CG7290-PA 419 CG7290-PA 158..364 28..220 191 26.3 Plus
CG7298-PA 369 CG7298-PA 4..334 7..335 170 21.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:48:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13765-PA 337 GI13765-PA 1..332 1..345 682 42 Plus
Dmoj\GI13796-PA 398 GI13796-PA 56..394 1..345 509 33.8 Plus
Dmoj\GI11529-PA 334 GI11529-PA 11..324 8..339 229 25.3 Plus
Dmoj\GI11528-PA 316 GI11528-PA 1..302 39..351 211 28.2 Plus
Dmoj\GI13577-PA 353 GI13577-PA 33..342 28..348 208 25.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:48:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25048-PA 344 GL25048-PA 1..340 1..345 883 54.8 Plus
Dper\GL25118-PA 371 GL25118-PA 1..334 4..350 233 25.2 Plus
Dper\GL25120-PA 338 GL25120-PA 14..325 9..339 223 27.2 Plus
Dper\GL25119-PA 336 GL25119-PA 8..336 4..345 216 26.5 Plus
Dper\GL25049-PA 401 GL25049-PA 74..396 25..345 174 24.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:48:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19965-PA 344 GA19965-PA 1..343 1..348 893 54.6 Plus
Dpse\GA23601-PA 323 GA23601-PA 1..319 26..345 476 32.7 Plus
Dpse\GA20015-PA 369 GA20015-PA 1..334 4..350 234 25.2 Plus
Dpse\GA14346-PA 336 GA14346-PA 8..336 4..345 220 26.5 Plus
Dpse\GA23689-PA 338 GA23689-PA 14..325 9..339 219 27.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:48:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22238-PA 348 GM22238-PA 1..347 1..345 1435 81.3 Plus
Dsec\GM24694-PA 415 GM24694-PA 82..411 11..345 556 34.2 Plus
Dsec\GM22259-PA 360 GM22259-PA 1..337 4..351 246 25.2 Plus
Dsec\GM22261-PA 338 GM22261-PA 2..328 4..339 206 25.3 Plus
Dsec\GM22260-PA 341 GM22260-PA 34..341 27..347 202 26.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:48:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12208-PA 348 GD12208-PA 1..347 1..345 1490 81.8 Plus
Dsim\GD12764-PA 415 GD12764-PA 82..411 11..345 557 34.5 Plus
Dsim\GD14858-PA 358 GD14858-PA 1..337 4..351 232 24.4 Plus
Dsim\GD14859-PA 334 GD14859-PA 4..334 1..347 211 26.2 Plus
Dsim\GD12761-PA 340 GD12761-PA 13..340 10..347 197 25 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:48:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11664-PA 325 GJ11664-PA 1..321 26..345 536 36.4 Plus
Dvir\GJ13756-PA 477 GJ13756-PA 1..313 1..317 387 33.8 Plus
Dvir\GJ13756-PA 477 GJ13756-PA 122..477 1..347 214 24.7 Plus
Dvir\GJ11548-PA 334 GJ11548-PA 7..324 4..339 211 25.5 Plus
Dvir\GJ17080-PA 329 GJ17080-PA 24..329 26..345 199 25.4 Plus
Dvir\GJ11547-PA 349 GJ11547-PA 42..336 39..345 196 26 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:48:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17243-PA 721 GK17243-PA 1..360 1..317 646 41.4 Plus
Dwil\GK16940-PA 338 GK16940-PA 1..297 39..346 221 27.1 Plus
Dwil\GK16942-PA 338 GK16942-PA 7..328 6..339 220 26.9 Plus
Dwil\GK13618-PA 345 GK13618-PA 8..345 4..350 195 23.1 Plus
Dwil\GK16941-PA 323 GK16941-PA 18..323 27..345 189 24.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:48:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22425-PA 349 GE22425-PA 1..349 1..348 1366 74.3 Plus
Dyak\GE14716-PA 199 GE14716-PA 1..199 151..348 717 71 Plus
Dyak\GE20164-PA 379 GE20164-PA 47..375 11..345 526 33 Plus
Dyak\GE23066-PA 358 GE23066-PA 6..337 8..351 220 24.7 Plus
Dyak\GE19648-PA 358 GE19648-PA 6..337 8..351 220 24.7 Plus