Clone LP03005 Report

Search the DGRC for LP03005

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:30
Well:5
Vector:pOT2
Associated Gene/Transcriptvanin-like-RA
Protein status:LP03005.pep: gold
Preliminary Size:1801
Sequenced Size:1892

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3648 2001-01-01 Release 2 assignment
CG32754 2001-07-04 Blastp of sequenced clone
CG32754 2003-01-01 Sim4 clustering to Release 3
vanin-like 2008-04-29 Release 5.5 accounting
vanin-like 2008-08-15 Release 5.9 accounting
vanin-like 2008-12-18 5.12 accounting

Clone Sequence Records

LP03005.complete Sequence

1892 bp (1892 high quality bases) assembled on 2001-07-04

GenBank Submission: AY052034

> LP03005.complete
CTCAGGCTCCATACGAAATGTCGAATACCTGGTGGTGGCTTTCAGTAGTG
TTACTAATCTTAGGGCTAATGCCTGGCATGAGTCAGCAGGCGGCCCTGGC
CGAATCGGATTACTATACGGCCGGAGTGGTGGAGTTCAAACAGTCGATCT
TAAGTCTATCGGCCTGGTCGGATTCCCTTGCTGGCTATGTGGAGATCATA
AACTCTGAGAACGCCAGTGCCACCGACATCATTGTGTTTCCCGAGAGCAC
ACTGAACTCCGCGGGTTCCACGACCTTTGTGCCCAATCCCGAGGATCAGA
TAAACCCGTGTTTGAGTGACCCCAATGCCACCTACTATGAGGAGTTTCTG
GTGACCCTGTCGTGCGCGGCCCGCAATGCCAGTAAATACATTGTGATCAA
TCTGACCGAGAAGCAAAAGTGCGAGGATATTCCCGAGGATACGAGGCCAT
GTGCATCTAACGGACTGAATGTTTTCAACACCAATGTAGTGTTCGATCGT
CAGGGAGTCGTGGTGTCCAGGTACCGAAAGGTTCATCTCTATGGTGAAGC
AAAGAACAGCACTTTTCTGCCCGAGCTGATCACCTTCGAGACAGACTTTG
GGGTCACCTTCGGTCATTTCATCTGCTTCGACATCCTGTTCTACACTCCC
GCCCATCAACTCATCGTGGAGCAGGGTATTACGGACTTCGTGTATCCGGC
CATGTGGTTCTCCCAACTGCCCTTCCTCACGGCTGTTCAGACGCAACAAG
GTTGGGCCTATGCCAACGATGTGAATCTCCTGGCGTCTGGAGCCAGTCGT
CCCTCCATTGGCAATAGTGGATCGGGCATCTATCACGGACGTTCCGGCAC
TTTGACCAGTGTCATGCGCCAGGACTCCGGCGAGAGGGCCATCTATGTGG
CCCAGGTGCCCAAGTATACTCGCAGTAGATCCCTGAAGAAACGTGCGAAG
AGGAGTCTACAGGAGATCCAAACCCGTCAGGTGGCCTCAAGCTCGAGTTT
CTACATGAAGCGCGATTACGTGGAGAACTATGAGTCTGAGTTGCTCAAGT
TGGACGAGGGAACTAGTGGTGCTATCAATAGAACCATCTGCCAGGGCAGC
TTTTGCTGTAACTTCGACATAGCGTGGAGATCCTTGGGTACAGCGACGGA
GAATGGTAGCTACTATAGCTATCGATTGGGAACCTACGATGGCTGGCGCA
ACGAGAACAATGTGGATGCCAATTACATACGTAATTGTGCGCTGTTCACC
TGTTCTGGGGACTCCATCGATGATTGTGGCAAACTATTGCCCACCGAGGG
TGAGCTTCAGCAGTCGCGAGTGACTTTCACGCGCCTGGCGATCGGTGTTA
CCTATCCAGAGTCACGGGAGTTTCTGCTATTTCCGGACACCCTGCAAGAT
AGTTTGCTGCCCCTGGAACCGAGCCAGTTTGAATGGTCTCAGCGAAAGCC
CACGGAAGATAGCTATGTCCAAGAAGTTCGCTTTGCCCTGAAGGAAACCC
AGGAGCTGAGCAATCTGTTGACCTTTGGCATCTATGGAAATTACTACGAC
AATGAGTGTACATTTGGTGTTGGCACCGAAGAGGAGCAGCTGGCCTGCGG
CTATAGAAGCGGATCCCCCGGACTGAGAATCCTTGGGGGTTGGCTAGCAA
TGCCGCTGATTATCCTGGCTATTGCCAGGACAATGAGTTCATAAGATCAA
AGTGACACGGGTGTCTTAGGCATTTTAAGTCAAATGTCGTAGGGTTCACA
TGACGTTGGATTCTTATTTTTTATTTTTTTTTTTACTTACTTCTAATGCT
CGATATTAACAGTATTTATATTAAGCAGTCAAAAATAAAAAATGCTCTCG
ACTTGTTGATAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LP03005.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:27:30
Subject Length Description Subject Range Query Range Score Percent Strand
vanin-like-RA 1931 vanin-like-RA 59..1923 1..1865 9325 100 Plus
CG32751-RA 1740 CG32751-RA 162..823 180..841 2575 92.5 Plus
CG32751.a 1589 CG32751.a 162..712 180..730 2350 95 Plus
CG32751.a 1589 CG32751.a 756..847 750..841 235 83.6 Plus
CG32751.a 1589 CG32751.a 1485..1572 1518..1605 215 82.9 Plus
CG32751-RA 1740 CG32751-RA 1461..1548 1518..1605 215 82.9 Plus
CG32751.a 1589 CG32751.a 1144..1261 1162..1279 170 76.2 Plus
CG32751-RA 1740 CG32751-RA 1120..1237 1162..1279 170 76.2 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:33:35
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 6092816..6093550 1462..728 3660 99.9 Minus
chrX 22417052 chrX 6093928..6094573 732..87 3170 99.4 Minus
chrX 22417052 chrX 6090037..6090587 730..180 2320 94.7 Minus
chrX 22417052 chrX 6092351..6092755 1864..1460 2010 99.8 Minus
chrX 22417052 chrX 6094634..6094723 90..1 435 98.9 Minus
chrX 22417052 chrX 6089622..6089785 913..750 280 78 Minus
chrX 22417052 chrX 6088917..6089003 1604..1518 210 82.8 Minus
chrX 22417052 chrX 6110698..6110751 643..590 195 90.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:47:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:33:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6200653..6201387 1462..728 3660 99.9 Minus
X 23542271 X 6201764..6202409 732..87 3230 100 Minus
X 23542271 X 6197862..6198412 730..180 2350 95.1 Minus
X 23542271 X 6200187..6200592 1865..1460 2030 100 Minus
X 23542271 X 6202470..6202559 90..1 450 100 Minus
X 23542271 X 6197447..6197610 913..750 280 78 Minus
X 23542271 X 6196741..6196828 1605..1518 215 83 Minus
X 23542271 X 6218525..6218578 643..590 195 90.7 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:49:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 6208751..6209485 1462..728 3660 99.8 Minus
X 23527363 X 6209862..6210507 732..87 3230 100 Minus
X 23527363 X 6205960..6206510 730..180 2350 95 Minus
X 23527363 X 6208285..6208690 1865..1460 2030 100 Minus
X 23527363 X 6210568..6210657 90..1 450 100 Minus
X 23527363 X 6205617..6205708 841..750 235 83.6 Minus
X 23527363 X 6204839..6204926 1605..1518 215 82.9 Minus
X 23527363 X 6226623..6226676 643..590 195 90.7 Minus
X 23527363 X 6205203..6205320 1279..1162 170 76.2 Minus
Blast to na_te.dros performed on 2019-03-16 04:33:34 has no hits.

LP03005.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:34:12 Download gff for LP03005.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 6092351..6092752 1463..1864 94 <- Minus
chrX 6092816..6093545 733..1462 100 <- Minus
chrX 6093928..6094570 90..732 99 <- Minus
chrX 6094635..6094723 1..89 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:34:32 Download gff for LP03005.complete
Subject Subject Range Query Range Percent Splice Strand
vanin-like-RA 1..1677 18..1694 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:14:20 Download gff for LP03005.complete
Subject Subject Range Query Range Percent Splice Strand
vanin-like-RA 1..1677 18..1694 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:34:10 Download gff for LP03005.complete
Subject Subject Range Query Range Percent Splice Strand
vanin-like-RA 1..1677 18..1694 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:45:41 Download gff for LP03005.complete
Subject Subject Range Query Range Percent Splice Strand
vanin-like-RA 1..1677 18..1694 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:43:50 Download gff for LP03005.complete
Subject Subject Range Query Range Percent Splice Strand
vanin-like-RA 1..1677 18..1694 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:07:27 Download gff for LP03005.complete
Subject Subject Range Query Range Percent Splice Strand
vanin-like-RA 1..1864 1..1864 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:14:20 Download gff for LP03005.complete
Subject Subject Range Query Range Percent Splice Strand
vanin-like-RA 1..1864 1..1864 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:34:10 Download gff for LP03005.complete
Subject Subject Range Query Range Percent Splice Strand
vanin-like-RA 1..1864 1..1864 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:45:41 Download gff for LP03005.complete
Subject Subject Range Query Range Percent Splice Strand
vanin-like-RA 1..1864 1..1864 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:43:50 Download gff for LP03005.complete
Subject Subject Range Query Range Percent Splice Strand
vanin-like-RA 1..1864 1..1864 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:34:12 Download gff for LP03005.complete
Subject Subject Range Query Range Percent Splice Strand
X 6200188..6200589 1463..1864 100 <- Minus
X 6200653..6201382 733..1462 100 <- Minus
X 6201764..6202406 90..732 100 <- Minus
X 6202471..6202559 1..89 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:34:12 Download gff for LP03005.complete
Subject Subject Range Query Range Percent Splice Strand
X 6200188..6200589 1463..1864 100 <- Minus
X 6200653..6201382 733..1462 100 <- Minus
X 6201764..6202406 90..732 100 <- Minus
X 6202471..6202559 1..89 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:34:12 Download gff for LP03005.complete
Subject Subject Range Query Range Percent Splice Strand
X 6200188..6200589 1463..1864 100 <- Minus
X 6200653..6201382 733..1462 100 <- Minus
X 6201764..6202406 90..732 100 <- Minus
X 6202471..6202559 1..89 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:34:10 Download gff for LP03005.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6094221..6094622 1463..1864 100 <- Minus
arm_X 6094686..6095415 733..1462 100 <- Minus
arm_X 6095797..6096439 90..732 100 <- Minus
arm_X 6096504..6096592 1..89 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:23:29 Download gff for LP03005.complete
Subject Subject Range Query Range Percent Splice Strand
X 6208286..6208687 1463..1864 100 <- Minus
X 6208751..6209480 733..1462 100 <- Minus
X 6209862..6210504 90..732 100 <- Minus
X 6210569..6210657 1..89 100   Minus

LP03005.hyp Sequence

Translation from 2 to 1693

> LP03005.hyp
QAPYEMSNTWWWLSVVLLILGLMPGMSQQAALAESDYYTAGVVEFKQSIL
SLSAWSDSLAGYVEIINSENASATDIIVFPESTLNSAGSTTFVPNPEDQI
NPCLSDPNATYYEEFLVTLSCAARNASKYIVINLTEKQKCEDIPEDTRPC
ASNGLNVFNTNVVFDRQGVVVSRYRKVHLYGEAKNSTFLPELITFETDFG
VTFGHFICFDILFYTPAHQLIVEQGITDFVYPAMWFSQLPFLTAVQTQQG
WAYANDVNLLASGASRPSIGNSGSGIYHGRSGTLTSVMRQDSGERAIYVA
QVPKYTRSRSLKKRAKRSLQEIQTRQVASSSSFYMKRDYVENYESELLKL
DEGTSGAINRTICQGSFCCNFDIAWRSLGTATENGSYYSYRLGTYDGWRN
ENNVDANYIRNCALFTCSGDSIDDCGKLLPTEGELQQSRVTFTRLAIGVT
YPESREFLLFPDTLQDSLLPLEPSQFEWSQRKPTEDSYVQEVRFALKETQ
ELSNLLTFGIYGNYYDNECTFGVGTEEEQLACGYRSGSPGLRILGGWLAM
PLIILAIARTMSS*

LP03005.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:01:50
Subject Length Description Subject Range Query Range Score Percent Strand
vanin-like-PA 558 CG32754-PA 1..558 6..563 2927 100 Plus
CG32751-PA 517 CG32751-PA 1..514 6..536 2071 73.8 Plus
CG32751-PB 525 CG32751-PB 1..522 6..536 2052 72.7 Plus
CG32750-PA 523 CG32750-PA 25..502 34..524 832 40.7 Plus
Btd-PA 553 CG3599-PA 4..508 13..515 830 39.6 Plus

LP03005.pep Sequence

Translation from 17 to 1693

> LP03005.pep
MSNTWWWLSVVLLILGLMPGMSQQAALAESDYYTAGVVEFKQSILSLSAW
SDSLAGYVEIINSENASATDIIVFPESTLNSAGSTTFVPNPEDQINPCLS
DPNATYYEEFLVTLSCAARNASKYIVINLTEKQKCEDIPEDTRPCASNGL
NVFNTNVVFDRQGVVVSRYRKVHLYGEAKNSTFLPELITFETDFGVTFGH
FICFDILFYTPAHQLIVEQGITDFVYPAMWFSQLPFLTAVQTQQGWAYAN
DVNLLASGASRPSIGNSGSGIYHGRSGTLTSVMRQDSGERAIYVAQVPKY
TRSRSLKKRAKRSLQEIQTRQVASSSSFYMKRDYVENYESELLKLDEGTS
GAINRTICQGSFCCNFDIAWRSLGTATENGSYYSYRLGTYDGWRNENNVD
ANYIRNCALFTCSGDSIDDCGKLLPTEGELQQSRVTFTRLAIGVTYPESR
EFLLFPDTLQDSLLPLEPSQFEWSQRKPTEDSYVQEVRFALKETQELSNL
LTFGIYGNYYDNECTFGVGTEEEQLACGYRSGSPGLRILGGWLAMPLIIL
AIARTMSS*

LP03005.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:58:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20308-PA 555 GF20308-PA 6..550 4..552 2278 74.9 Plus
Dana\GF20307-PA 544 GF20307-PA 8..544 8..553 1926 67 Plus
Dana\GF20306-PA 560 GF20306-PA 4..513 8..512 821 37.5 Plus
Dana\GF20309-PA 523 GF20309-PA 6..516 15..546 783 38.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:58:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17690-PA 556 GG17690-PA 1..554 1..554 2741 91.3 Plus
Dere\GG17692-PA 524 GG17692-PA 26..503 29..519 876 42 Plus
Dere\GG17689-PA 563 GG17689-PA 19..552 23..552 847 38.2 Plus
Dere\GG17691-PA 171 GG17691-PA 36..88 185..238 243 85.2 Plus
Dere\GG17691-PA 171 GG17691-PA 89..168 418..515 191 45.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:58:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24839-PA 575 GH24839-PA 32..567 20..547 1650 56.7 Plus
Dgri\GH24838-PA 559 GH24838-PA 18..507 22..510 904 40 Plus
Dgri\GH24840-PA 544 GH24840-PA 5..496 7..511 834 40.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:20:51
Subject Length Description Subject Range Query Range Score Percent Strand
vanin-like-PA 558 CG32754-PA 1..558 1..558 2927 100 Plus
CG32751-PA 517 CG32751-PA 1..514 1..531 2071 73.8 Plus
CG32751-PB 525 CG32751-PB 1..522 1..531 2052 72.7 Plus
CG32750-PA 523 CG32750-PA 25..502 29..519 832 40.7 Plus
Btnd-PA 553 CG3599-PA 4..508 8..510 830 39.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:58:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16173-PA 570 GI16173-PA 26..565 21..552 1587 55.4 Plus
Dmoj\GI16172-PA 566 GI16172-PA 8..559 7..553 1573 53.8 Plus
Dmoj\GI16171-PA 570 GI16171-PA 15..562 12..549 1558 53.3 Plus
Dmoj\GI16170-PA 543 GI16170-PA 24..499 29..510 907 41.9 Plus
Dmoj\GI16174-PA 558 GI16174-PA 22..513 28..511 808 39.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:58:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21361-PA 552 GL21361-PA 3..540 2..541 1886 66.5 Plus
Dper\GL21362-PA 523 GL21362-PA 6..490 7..511 832 39.2 Plus
Dper\GL21358-PA 465 GL21358-PA 108..400 219..510 423 36.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:58:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17117-PA 552 GA17117-PA 3..540 2..541 1880 66.4 Plus
Dpse\GA17549-PA 592 GA17549-PA 22..527 8..510 851 39.4 Plus
Dpse\GA23775-PA 524 GA23775-PA 6..491 7..511 836 39.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:58:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12589-PA 558 GM12589-PA 1..558 1..558 2860 95.5 Plus
Dsec\GM12590-PA 482 GM12590-PA 1..479 1..531 1883 67.2 Plus
Dsec\GM12591-PA 523 GM12591-PA 25..522 29..554 847 39.7 Plus
Dsec\GM12588-PA 336 GM12588-PA 4..144 8..150 187 35.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:58:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16207-PA 558 GD16207-PA 1..558 1..558 2870 95.9 Plus
Dsim\GD16208-PA 516 GD16208-PA 1..513 1..531 2093 73.3 Plus
Dsim\GD16209-PA 523 GD16209-PA 25..508 29..525 852 40.9 Plus
Dsim\GD16205-PA 553 GD16205-PA 4..508 8..510 852 39.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:58:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16663-PA 591 GJ16663-PA 47..591 20..558 1631 55.8 Plus
Dvir\GJ16662-PA 572 GJ16662-PA 8..513 12..510 897 40 Plus
Dvir\GJ16664-PA 540 GJ16664-PA 22..499 28..511 815 39.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:58:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15353-PA 572 GK15353-PA 16..563 8..550 1795 60.9 Plus
Dwil\GK17695-PA 556 GK17695-PA 9..489 26..510 859 41 Plus
Dwil\GK15373-PA 592 GK15373-PA 20..490 28..513 759 38.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:58:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16478-PA 556 GE16478-PA 1..554 1..554 2707 92.1 Plus
Dyak\GE16479-PA 516 GE16479-PA 1..513 1..531 2033 71 Plus
Dyak\GE16480-PA 525 GE16480-PA 25..494 29..511 858 42.1 Plus
Dyak\GE16477-PA 553 GE16477-PA 18..508 22..510 837 39.3 Plus