Clone LP03104 Report

Search the DGRC for LP03104

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:31
Well:4
Vector:pOT2
Associated Gene/TranscriptCG7906-RA
Protein status:LP03104.pep: gold
Preliminary Size:1333
Sequenced Size:1250

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7906 2001-01-01 Release 2 assignment
CG7906 2002-05-17 Blastp of sequenced clone
CG7906 2003-01-01 Sim4 clustering to Release 3
CG7906 2008-04-29 Release 5.5 accounting
CG7906 2008-08-15 Release 5.9 accounting
CG7906 2008-12-18 5.12 accounting

Clone Sequence Records

LP03104.complete Sequence

1250 bp (1250 high quality bases) assembled on 2002-05-17

GenBank Submission: AY118600

> LP03104.complete
TTTGGGTGTCGAAAAGAAACACAAGTACGGATTAACGGAGTAACATGAAG
ACTATTTTGGTTTTAGCCATCCTGTCGCTGGCGCAAGCCGCCGAGTTGAC
TCAGACTACGGAAGCCGCAACTACAGCCACAACGGGGAAACCACAGCAAA
CGGAGCTCCCCATTCACATCCAGAACCTGATAACCAGCCACATCAATCAT
GTACTCCAGCACATAAAGAACAAACCTCAGGTTTCGAACACATTGAGTGG
ACCTGTGGATTGGCATGGGAGTGGGAGTGGGAGTGAGGGCGGTGCGCCAG
TGGTCAAGCCCCATCCAGATCTCCTTCCACCATTGGCACACTCTGGTGAT
GTCCTTGCCCCTCCCCTTGCCGACGTCCCAGCGGCTGCACCTGCGTTGCA
ATCTGGCATACAGTCGGTGCAAGCTGGCAATCCACCGGTGAAGGTGACCC
ATCACCAGGCCACCGGTACTCTGATCCACCACGGAAGGCCGGTGGTGCAG
AATAAGGTGGTGATGCCGCCCGTGGAGCATGTGGTGCTCTCGCTTCCTGG
TCAAGAACCCATTAATGTGGCCGAAAAGCTGCAAAAACTTCAACAGCATG
TGACCAAGGTGATGCAGCAGGCCGAGAAACACATTCCATTAGCAGTGAAC
CAGGCCATTAAACAAAAGAAAGAACAGGAAGCTCAAAGAGAAAAGGAGCA
GCTCCAGAAGGATAAAGAAATCAACAAGGTTGATGACAAAGAAAAGGAAG
TAAAAGAAGATCAGGAGGATCCTGAACCATCCGAAACAACACCCCAACCA
AGTTCATCGAAGGCTGGTCGCTCGCTGGTTATTCCCGATAAAGTGTCCAA
TATAGTCAACCAAGTTCACGCCCACATTCCCCAACTGATTGCCCAGCATC
GTGAGGAAATGAAATTGGGAAAATGCAATTTTCAGTGTCCCAAAGCATCA
CTGTCCATTTGTGCCAGCAACGGCAAATGTGTGGTCAATTTTCCAGGCCA
ATGTGAGCTGAGTCAGTGGAACTGCTTCAACACCAAGAATGTTTTCCACC
AAGTGCACGATGCCGAATGCCAAAATACCATTACTTGCTATAAAAGGGAT
ATGATGTAAGCTGTTCCTCTGGGATGTGATTCAATTATACAAAACGAATT
TACACTATATTCCATCGAAAATATGTAAACCTTTTTTAAATAATTCCAAA
TTAATAATAGCTGCAAAATATGAAATAGATATTAAAAAAAAAAAAAAAAA

LP03104.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:06:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG7906-RA 1341 CG7906-RA 78..1313 1..1236 6180 100 Plus
CG7906.b 2155 CG7906.b 265..1500 1..1236 6180 100 Plus
CG7906.a 1295 CG7906.a 34..1074 1..1041 5205 100 Plus
CG7906.a 1295 CG7906.a 1077..1275 1038..1236 995 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:34:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 14227128..14228105 64..1041 4875 99.9 Plus
chr3L 24539361 chr3L 14228167..14228359 1041..1233 965 100 Plus
chr3L 24539361 chr3L 14226834..14226899 1..66 330 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:47:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:34:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14237018..14237995 64..1041 4890 100 Plus
3L 28110227 3L 14238057..14238252 1041..1236 980 100 Plus
3L 28110227 3L 14236724..14236789 1..66 330 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:37:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 14230118..14231095 64..1041 4890 100 Plus
3L 28103327 3L 14231157..14231352 1041..1236 980 100 Plus
3L 28103327 3L 14229824..14229889 1..66 330 100 Plus
Blast to na_te.dros performed 2019-03-16 11:34:32
Subject Length Description Subject Range Query Range Score Percent Strand
McClintock 6450 McClintock McCLINTOCK 6450bp 759..862 660..763 123 60 Plus
1360 3409 1360 1360 3409bp 3001..3080 1132..1211 121 61.3 Plus

LP03104.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:35:34 Download gff for LP03104.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 14226834..14226899 1..66 100 -> Plus
chr3L 14227131..14228105 67..1041 99 -> Plus
chr3L 14228168..14228359 1042..1233 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:34:41 Download gff for LP03104.complete
Subject Subject Range Query Range Percent Splice Strand
CG7906-RA 1..1065 45..1109 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:48:33 Download gff for LP03104.complete
Subject Subject Range Query Range Percent Splice Strand
CG7906-RA 1..1065 45..1109 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:01:00 Download gff for LP03104.complete
Subject Subject Range Query Range Percent Splice Strand
CG7906-RA 1..1065 45..1109 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:41:06 Download gff for LP03104.complete
Subject Subject Range Query Range Percent Splice Strand
CG7906-RA 1..1065 45..1109 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:21:01 Download gff for LP03104.complete
Subject Subject Range Query Range Percent Splice Strand
CG7906-RA 1..1065 45..1109 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:25:13 Download gff for LP03104.complete
Subject Subject Range Query Range Percent Splice Strand
CG7906-RA 1..1233 1..1233 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:48:33 Download gff for LP03104.complete
Subject Subject Range Query Range Percent Splice Strand
CG7906-RA 1..1233 1..1233 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:01:00 Download gff for LP03104.complete
Subject Subject Range Query Range Percent Splice Strand
CG7906-RA 1..1233 1..1233 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:41:06 Download gff for LP03104.complete
Subject Subject Range Query Range Percent Splice Strand
CG7906-RA 1..1233 1..1233 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:21:01 Download gff for LP03104.complete
Subject Subject Range Query Range Percent Splice Strand
CG7906-RA 1..1233 1..1233 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:35:34 Download gff for LP03104.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14236724..14236789 1..66 100 -> Plus
3L 14237021..14237995 67..1041 100 -> Plus
3L 14238058..14238249 1042..1233 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:35:34 Download gff for LP03104.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14236724..14236789 1..66 100 -> Plus
3L 14237021..14237995 67..1041 100 -> Plus
3L 14238058..14238249 1042..1233 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:35:34 Download gff for LP03104.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14236724..14236789 1..66 100 -> Plus
3L 14237021..14237995 67..1041 100 -> Plus
3L 14238058..14238249 1042..1233 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:01:00 Download gff for LP03104.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14229824..14229889 1..66 100 -> Plus
arm_3L 14230121..14231095 67..1041 100 -> Plus
arm_3L 14231158..14231349 1042..1233 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:13:23 Download gff for LP03104.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14230121..14231095 67..1041 100 -> Plus
3L 14231158..14231349 1042..1233 100   Plus
3L 14229824..14229889 1..66 100 -> Plus

LP03104.hyp Sequence

Translation from 44 to 1108

> LP03104.hyp
MKTILVLAILSLAQAAELTQTTEAATTATTGKPQQTELPIHIQNLITSHI
NHVLQHIKNKPQVSNTLSGPVDWHGSGSGSEGGAPVVKPHPDLLPPLAHS
GDVLAPPLADVPAAAPALQSGIQSVQAGNPPVKVTHHQATGTLIHHGRPV
VQNKVVMPPVEHVVLSLPGQEPINVAEKLQKLQQHVTKVMQQAEKHIPLA
VNQAIKQKKEQEAQREKEQLQKDKEINKVDDKEKEVKEDQEDPEPSETTP
QPSSSKAGRSLVIPDKVSNIVNQVHAHIPQLIAQHREEMKLGKCNFQCPK
ASLSICASNGKCVVNFPGQCELSQWNCFNTKNVFHQVHDAECQNTITCYK
RDMM*

LP03104.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:38:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG7906-PA 354 CG7906-PA 1..354 1..354 1855 100 Plus
CG7906-PB 356 CG7906-PB 1..356 1..354 1842 99.4 Plus

LP03104.pep Sequence

Translation from 44 to 1108

> LP03104.pep
MKTILVLAILSLAQAAELTQTTEAATTATTGKPQQTELPIHIQNLITSHI
NHVLQHIKNKPQVSNTLSGPVDWHGSGSGSEGGAPVVKPHPDLLPPLAHS
GDVLAPPLADVPAAAPALQSGIQSVQAGNPPVKVTHHQATGTLIHHGRPV
VQNKVVMPPVEHVVLSLPGQEPINVAEKLQKLQQHVTKVMQQAEKHIPLA
VNQAIKQKKEQEAQREKEQLQKDKEINKVDDKEKEVKEDQEDPEPSETTP
QPSSSKAGRSLVIPDKVSNIVNQVHAHIPQLIAQHREEMKLGKCNFQCPK
ASLSICASNGKCVVNFPGQCELSQWNCFNTKNVFHQVHDAECQNTITCYK
RDMM*

LP03104.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:32:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24598-PA 343 GF24598-PA 1..343 1..354 987 63.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:32:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15681-PA 350 GG15681-PA 1..350 1..354 1547 89.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:32:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17098-PA 287 GH17098-PA 1..287 1..354 514 35.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:28:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG7906-PA 354 CG7906-PA 1..354 1..354 1855 100 Plus
CG7906-PB 356 CG7906-PB 1..356 1..354 1842 99.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:32:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11700-PA 285 GI11700-PA 15..283 27..352 515 40.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:32:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21006-PA 126 GL21006-PA 1..126 1..125 250 61.4 Plus
Dper\GL21007-PA 61 GL21007-PA 9..61 302..354 218 73.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:32:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20676-PA 353 GA20676-PA 1..353 1..354 909 62.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:32:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25463-PA 352 GM25463-PA 1..352 1..354 1770 95.8 Plus
Dsec\GM24552-PA 112 GM24552-PA 19..94 262..342 140 33.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:32:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14488-PA 352 GD14488-PA 1..352 1..354 1778 95.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:32:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11375-PA 300 GJ11375-PA 1..300 1..354 623 42.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:32:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12691-PA 260 GK12691-PA 25..259 110..354 631 53.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:32:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22011-PA 354 GE22011-PA 1..354 1..354 1531 87.7 Plus