Clone LP03268 Report

Search the DGRC for LP03268

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:32
Well:68
Vector:pOT2
Associated Gene/TranscriptCG6145-RB
Protein status:LP03268.pep: gold
Preliminary Size:1827
Sequenced Size:1847

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6145 2001-01-01 Release 2 assignment
CG6145 2001-11-30 Blastp of sequenced clone
CG6145 2003-01-01 Sim4 clustering to Release 3
CG6145 2008-04-29 Release 5.5 accounting
CG6145 2008-08-15 Release 5.9 accounting
CG6145 2008-12-18 5.12 accounting

Clone Sequence Records

LP03268.complete Sequence

1847 bp (1847 high quality bases) assembled on 2001-11-30

GenBank Submission: AY069729

> LP03268.complete
AAAGAACGCGTGCGTTTAACGAGCATTTACTGCGAAGCAAGTCGCGCGCA
CTAGAAGTCTGAATGCTCCGTCGCCATTCCAGCATTTCGGGCCATGTGGT
CGCATTATGAAGAACTCCGCCATGGTGATGCAGATTCAGGATCCGGCCAG
TCAGCGTTTGACCTGGTACAAGCCACCTCTCACCGTACTCGTGATCAAAA
AGAAGGACTCACAGGTCCTGCCGCCCTTCGTTCAGCTGGTGGAGTGGCTG
GTGCAGGAGAAGCACATGGTCGTCTGGGTGGAGTCAGCCGTCTTAGAGGA
CAAGCTGCTACGGGATGATGTTAAGCTGGAGCAGGAGAGCTCCAAGTTCC
AAAAAGTGCATCAACAGTACGCCGGAGTAAGAGCGCGTTTCCTGGATCTC
CGTGAAAAGCTAGTGACCTTTAAAGATGGCCGCGATGACCTGACCGATCG
GATTGACTTTATCGTCTGCCTGGGAGGCGATGGCACTCTGCTGTACGCCT
CACAGCTGTTCCAGCAATCTGTCCCACCGGTGATGGCCTTCTATCTGGGC
TCCCTTGGGTTTCTTACGCCCTTCCAGTGCGACAACTTCCAGGAACAGGT
GACCAATGTCCTGGAGGGTCATGCTGCCCTAACGCTACGTAGTCGCCTGC
GCTGCTCCATCCACCGCAAGGGCGAACGCCGCAAGGAATCGCTTCTGCAC
TCGGTGGGTGGTAATCTCCTGATACCGAGTTTCCAAAGGCAGCTCAACTA
CGTGGAGCTTAACAACGGACAAACAGGAAAAGCTGGCAGCAATAATAACA
ATGGCCACAACAATAGCATCCTGGTGCTTAACGAGGTGGTCATCAACCGA
GGACCCTCGCCGTACCTGAGCAACATTGATATCTTCTTGGAGGGCAAATA
CATTACGTCGGTGCAGGGCGATGGCCTGATCGTATCGACGCCCACGGGAA
GTACAGCATATGCGGCAGCAGCCGGTGCCTCCATGATCCATCCCTCCGTG
CCGGCCATTTTGGTGACGCCCATTTGCCCGCACTCGCTGAGCTTCAGGCC
CATTGTGGTGCCCGCCGGAGTGGAGCTAAAGATATCAATTTCACCTGATA
GCCGCAACACCTCACGCGTTTCCTTCGACGGACGCAACGACCAGGAGCTG
AACCATGGGGACAGCCTGCGAGTGACCACCTCAATCTATCCCGTGCCCAG
CATTTGCTCCCAGGACCAAATCTCCGATTGGTTTGACTCCCTGGCCGAGG
GTCTGCACTGGAATGTCCGCAAGCGGCAGAAGTGCCTTGATGAGCTGTCG
GACTTGACCACTTCGGGGTCGGAGGACACGCTCGATGACTTTGACAATCT
TCAGATCTACGATGCGTAATGGCAGCCAAACCCAATCACTGTTTGTTAGC
GTGGCCAATTAGACTAGTTGTAGTCGTAGTTTTTAGGGCTTGTGTGCTAG
TGTGCAATTTGGTAGGCTTAATTATGTAGGAAAAATACTCTGTTGTACTA
TATACACTTTAAGTCGCTTGGTTGAAATGTTAAATGTTAATTGATTCCGA
TCGCAATGTTTGCTTAAGCTAGACCTATTCTGTTGATTCTTGTGAACAAA
AAAAAAAATTACAGCTTACGCTTAGCTCTTAAGTTTTTATTATTACAAAA
CATACGACTAATTGCGTCGAGTGCTAAGTACTTAAGCTGACTCGCGTTAT
CTGTACAATTCGATGGAGGTAATAAAAACTGTATTATTTACTTAAAGCGC
CACAAAATCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LP03268.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:50:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG6145-RB 1874 CG6145-RB 114..1874 1..1761 8805 100 Plus
CG6145-RC 2363 CG6145-RC 645..2361 45..1761 8585 100 Plus
CG6145-RA 2304 CG6145-RA 587..2302 46..1761 8580 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:34:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 9424672..9425352 1760..1080 3405 100 Minus
chr2R 21145070 chr2R 9425499..9426156 1081..424 3290 100 Minus
chr2R 21145070 chr2R 9426273..9426650 423..46 1890 100 Minus
chr2R 21145070 chr2R 9436255..9436525 1081..811 770 85.6 Minus
chr2R 21145070 chr2R 9436607..9436837 654..424 585 83.5 Minus
chr2R 21145070 chr2R 9436969..9437217 291..46 580 83.1 Minus
chr2R 21145070 chr2R 9435945..9436197 1332..1080 545 81 Minus
chr2R 21145070 chr2R 9427987..9428032 46..1 230 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:48:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:34:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13537370..13538051 1761..1080 3410 100 Minus
2R 25286936 2R 13538198..13538855 1081..424 3290 100 Minus
2R 25286936 2R 13538972..13539349 423..46 1890 100 Minus
2R 25286936 2R 13548954..13549224 1081..811 770 85.6 Minus
2R 25286936 2R 13549306..13549536 654..424 585 83.5 Minus
2R 25286936 2R 13549668..13549916 291..46 580 83.1 Minus
2R 25286936 2R 13548644..13548896 1332..1080 545 81 Minus
2R 25286936 2R 13540686..13540731 46..1 230 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:16:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 13538569..13539250 1761..1080 3410 100 Minus
2R 25260384 2R 13539397..13540054 1081..424 3290 100 Minus
2R 25260384 2R 13540171..13540548 423..46 1890 100 Minus
2R 25260384 2R 13550153..13550423 1081..811 770 85.6 Minus
2R 25260384 2R 13550505..13550735 654..424 585 83.5 Minus
2R 25260384 2R 13549843..13550095 1332..1080 545 81 Minus
2R 25260384 2R 13550959..13551115 202..46 485 87.2 Minus
2R 25260384 2R 13541885..13541930 46..1 230 100 Minus
2R 25260384 2R 13550867..13550944 291..214 210 84.6 Minus
Blast to na_te.dros performed on 2019-03-16 04:34:27 has no hits.

LP03268.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:35:33 Download gff for LP03268.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 9424672..9425350 1082..1760 100 <- Minus
chr2R 9425499..9426156 424..1081 100 <- Minus
chr2R 9426273..9426650 46..423 100 <- Minus
chr2R 9427988..9428032 1..45 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:34:53 Download gff for LP03268.complete
Subject Subject Range Query Range Percent Splice Strand
CG6145-RC 314..1647 37..1369 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:19:28 Download gff for LP03268.complete
Subject Subject Range Query Range Percent Splice Strand
CG6145-RC 314..1647 37..1369 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:34:25 Download gff for LP03268.complete
Subject Subject Range Query Range Percent Splice Strand
CG6145-RC 314..1647 37..1369 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:45:39 Download gff for LP03268.complete
Subject Subject Range Query Range Percent Splice Strand
CG6145-RC 314..1647 37..1369 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:44:07 Download gff for LP03268.complete
Subject Subject Range Query Range Percent Splice Strand
CG6145-RC 314..1647 37..1369 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:52:51 Download gff for LP03268.complete
Subject Subject Range Query Range Percent Splice Strand
CG6145-RB 1..1743 1..1743 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:19:28 Download gff for LP03268.complete
Subject Subject Range Query Range Percent Splice Strand
CG6145-RB 1..1743 1..1743 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:34:25 Download gff for LP03268.complete
Subject Subject Range Query Range Percent Splice Strand
CG6145-RB 67..1826 1..1760 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:45:39 Download gff for LP03268.complete
Subject Subject Range Query Range Percent Splice Strand
CG6145-RB 1..1760 1..1760 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:44:07 Download gff for LP03268.complete
Subject Subject Range Query Range Percent Splice Strand
CG6145-RB 67..1826 1..1760 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:35:33 Download gff for LP03268.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13537371..13538049 1082..1760 100 <- Minus
2R 13538198..13538855 424..1081 100 <- Minus
2R 13538972..13539349 46..423 100 <- Minus
2R 13540687..13540731 1..45 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:35:33 Download gff for LP03268.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13537371..13538049 1082..1760 100 <- Minus
2R 13538198..13538855 424..1081 100 <- Minus
2R 13538972..13539349 46..423 100 <- Minus
2R 13540687..13540731 1..45 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:35:33 Download gff for LP03268.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13537371..13538049 1082..1760 100 <- Minus
2R 13538198..13538855 424..1081 100 <- Minus
2R 13538972..13539349 46..423 100 <- Minus
2R 13540687..13540731 1..45 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:34:25 Download gff for LP03268.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9424876..9425554 1082..1760 100 <- Minus
arm_2R 9425703..9426360 424..1081 100 <- Minus
arm_2R 9426477..9426854 46..423 100 <- Minus
arm_2R 9428192..9428236 1..45 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:22:00 Download gff for LP03268.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13538570..13539248 1082..1760 100 <- Minus
2R 13539397..13540054 424..1081 100 <- Minus
2R 13540171..13540548 46..423 100 <- Minus
2R 13541886..13541930 1..45 100   Minus

LP03268.pep Sequence

Translation from 106 to 1368

> LP03268.pep
MKNSAMVMQIQDPASQRLTWYKPPLTVLVIKKKDSQVLPPFVQLVEWLVQ
EKHMVVWVESAVLEDKLLRDDVKLEQESSKFQKVHQQYAGVRARFLDLRE
KLVTFKDGRDDLTDRIDFIVCLGGDGTLLYASQLFQQSVPPVMAFYLGSL
GFLTPFQCDNFQEQVTNVLEGHAALTLRSRLRCSIHRKGERRKESLLHSV
GGNLLIPSFQRQLNYVELNNGQTGKAGSNNNNGHNNSILVLNEVVINRGP
SPYLSNIDIFLEGKYITSVQGDGLIVSTPTGSTAYAAAAGASMIHPSVPA
ILVTPICPHSLSFRPIVVPAGVELKISISPDSRNTSRVSFDGRNDQELNH
GDSLRVTTSIYPVPSICSQDQISDWFDSLAEGLHWNVRKRQKCLDELSDL
TTSGSEDTLDDFDNLQIYDA*

LP03268.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:16:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11178-PA 544 GF11178-PA 128..544 1..420 1898 90.7 Plus
Dana\GF11176-PA 543 GF11176-PA 169..542 1..419 1504 74.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:16:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22483-PA 549 GG22483-PA 130..549 1..420 2194 98.1 Plus
Dere\GG22480-PA 643 GG22480-PA 269..642 1..419 1492 73.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:16:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22633-PA 564 GH22633-PA 143..564 1..420 1869 87.1 Plus
Dgri\GH22631-PA 442 GH22631-PA 69..441 1..419 1575 73.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:12:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG6145-PF 484 CG6145-PF 65..484 1..420 2173 100 Plus
CG6145-PE 483 CG6145-PE 64..483 1..420 2173 100 Plus
CG6145-PB 420 CG6145-PB 1..420 1..420 2173 100 Plus
CG6145-PC 548 CG6145-PC 129..548 1..420 2173 100 Plus
CG6145-PA 520 CG6145-PA 101..520 1..420 2173 100 Plus
CG33156-PF 450 CG33156-PF 76..449 1..419 1519 73.6 Plus
CG33156-PB 453 CG33156-PB 79..452 1..419 1519 73.6 Plus
CG33156-PE 490 CG33156-PE 116..489 1..419 1519 73.6 Plus
CG33156-PA 454 CG33156-PA 80..453 1..419 1519 73.6 Plus
CG33156-PC 375 CG33156-PC 1..374 1..419 1519 73.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:16:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21329-PA 560 GI21329-PA 139..560 1..420 1865 87.8 Plus
Dmoj\GI21327-PA 412 GI21327-PA 28..411 1..419 1528 71.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:16:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17067-PA 557 GL17067-PA 129..550 1..420 1957 91.3 Plus
Dper\GL17065-PA 546 GL17065-PA 175..545 1..419 1531 75 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:16:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24350-PA 557 GA24350-PA 129..550 1..420 1954 91 Plus
Dpse\GA17329-PA 605 GA17329-PA 234..604 1..419 1528 75 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:16:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20270-PA 548 GM20270-PA 129..548 1..420 2201 98.1 Plus
Dsec\GM20268-PA 523 GM20268-PA 149..522 1..419 1488 73.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:16:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25753-PA 519 GD25753-PA 100..519 1..420 2200 98.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:16:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19674-PA 557 GJ19674-PA 137..557 1..420 1857 87.5 Plus
Dvir\GJ19672-PA 448 GJ19672-PA 75..447 1..419 1568 73.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:16:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15610-PA 569 GK15610-PA 143..568 1..419 1919 89.9 Plus
Dwil\GK15608-PA 475 GK15608-PA 110..474 1..419 1571 74 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:16:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13354-PA 522 GE13354-PA 103..522 1..420 2213 98.8 Plus
Dyak\GE13352-PA 454 GE13352-PA 80..453 1..419 1495 73.3 Plus

LP03268.hyp Sequence

Translation from 106 to 1368

> LP03268.hyp
MKNSAMVMQIQDPASQRLTWYKPPLTVLVIKKKDSQVLPPFVQLVEWLVQ
EKHMVVWVESAVLEDKLLRDDVKLEQESSKFQKVHQQYAGVRARFLDLRE
KLVTFKDGRDDLTDRIDFIVCLGGDGTLLYASQLFQQSVPPVMAFYLGSL
GFLTPFQCDNFQEQVTNVLEGHAALTLRSRLRCSIHRKGERRKESLLHSV
GGNLLIPSFQRQLNYVELNNGQTGKAGSNNNNGHNNSILVLNEVVINRGP
SPYLSNIDIFLEGKYITSVQGDGLIVSTPTGSTAYAAAAGASMIHPSVPA
ILVTPICPHSLSFRPIVVPAGVELKISISPDSRNTSRVSFDGRNDQELNH
GDSLRVTTSIYPVPSICSQDQISDWFDSLAEGLHWNVRKRQKCLDELSDL
TTSGSEDTLDDFDNLQIYDA*

LP03268.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:22:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG6145-PF 484 CG6145-PF 65..484 1..420 2173 100 Plus
CG6145-PE 483 CG6145-PE 64..483 1..420 2173 100 Plus
CG6145-PB 420 CG6145-PB 1..420 1..420 2173 100 Plus
CG6145-PC 548 CG6145-PC 129..548 1..420 2173 100 Plus
CG6145-PA 520 CG6145-PA 101..520 1..420 2173 100 Plus