Clone LP03430 Report

Search the DGRC for LP03430

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:34
Well:30
Vector:pOT2
Associated Gene/TranscriptGdi-RA
Protein status:LP03430.pep: gold
Preliminary Size:824
Sequenced Size:2338

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4079 2002-01-01 Sim4 clustering to Release 2
CG4422 2002-05-18 Blastp of sequenced clone
CG4079 2003-01-01 Sim4 clustering to Release 3
Gdi 2008-04-29 Release 5.5 accounting
Gdi 2008-08-15 Release 5.9 accounting
Taf11 2008-08-15 Release 5.9 accounting
Gdi 2008-12-18 5.12 accounting
Taf11 2008-12-18 5.12 accounting

Clone Sequence Records

LP03430.complete Sequence

2338 bp (2338 high quality bases) assembled on 2002-05-18

GenBank Submission: BT003563

> LP03430.complete
ATTTTGTTTATTATTCGCTGGTGCTTTTCAAATTTCATTTAAATGGACGA
AATCCTCTTTCCCACGCAGCAAAAAAGCAACTCCCTAAGCGACGGCGACG
ATGTCGACCTGAAATTCTTCCAGTCGGCCTCCGGCGAGCGGAAGGACAGC
GACACCTCGGATCCGGGAAACGATGCGGATCGTGATGGCAAGGATGCGGA
TGGGGACAACGACAACAAGAACACGGACGGAGATGGTGACTCTGGCGAGC
CGGCGCACAAAAAGCTCAAGACGAAGAAGGAACTGGAGGAGGAGGAGCGC
GAACGAATGCAGGTTCTCGTTTCCAACTTTACGGAAGAACAGCTGGATCG
CTACGAAATGTATCGTCGCTCTGCCTTTCCCAAGGCCGCCGTCAAGCGTC
TAATGCAAACTATCACCGGCTGTTCCGTGTCCCAGAATGTTGTGATAGCC
ATGTCCGGCATTGCGAAGGTCTTCGTCGGCGAGGTTGTGGAGGAAGCCCT
CGACGTGATGGAGGCCCAAGGTGAATCCGGTGCCCTGCAGCCCAAATTCA
TACGAGAGGCAGTGCGACGACTGAGGACCAAGGATCGGATGCCCATAGGC
AGATACCAGCAGCCCTATTTCAGACTGAACTAGCGAGTCGAGACATTAAG
AAATATAGTTTGTAAGGCTGTTAGTCAATATAAAAATACATAAACAAGTA
AAAAGTAAATAAATATAAAGATTTTTTTAACAAAAAAAAAAAAAAAAAAC
TCGAGGAAAAGTCCACCAAATCGAACGTCGCAGCAAGTGAAAAGGGCGAA
AACCGGATAAAAAAAATATATAAATTACTGTGATTGCAATATATAAATAA
GTGCGATCCAATATGAATGAGGAATACGATGCGATTGTGCTAGGAACGGG
CCTCAAGGAGTGCATCCTCAGCGGGATGCTGTCCGTGTCCGGCAAGAAGG
TTTTGCATATTGATCGAAACAAGTACTACGGCGGCGAGTCCGCCTCGATA
ACGCCGCTGGAGGAGCTCTTCCAGCGCTACGGACTGGAGCCGCCCGGCGA
ACGATTTGGGCGTGGCCGCGACTGGAACGTGGACCTGATCCCCAAGTTCC
TGATGGCCAATGGCCAGCTGGTCAAGCTGCTGATCCACACGGGCGTCACC
CGCTATCTGGAGTTCAAGTCCATCGAGGGCAGCTACGTTTACAAGGGCGG
CAAGATAGCCAAGGTGCCGGTGGACCAAAAGGAGGCCCTGGCATCCGATC
TCATGGGTATGTTCGAGAAGCGTCGCTTCCGGAACTTCCTCATCTACGTG
CAGGATTTCCGAGAAGATGACCCCAAGACCTGGAAGGACTTTGACCCCAC
CAAGGCCAACATGCAGGGTCTGTACGACAAGTTCGGACTGGACAAGAACA
CGCAGGACTTCACCGGCCACGCCCTGGCCCTTTTCCGCGACGATGAGTAT
CTGAACGAGCCGGCCGTGAACACCATCCGGCGGATTAAGCTCTACTCCGA
TTCGCTGGCGCGTTACGGCAAGTCGCCCTACCTTTATCCCATGTACGGCC
TGGGTGAGCTGCCCCAGGGATTCGCACGTCTGTCGGCCATCTACGGCGGC
ACCTACATGCTTGACAAGCCCATCGACGAGATTGTCCTCGGCGAGGGCGG
CAAGGTGGTGGGAGTGCGCTCCGGCGAAGAGGTCGCCAAGTGCAAGCAGG
TCTACTGCGATCCCAGCTACGTGCCCGAGAAGGTGCGCAAGCGTGGCAAG
GTGATTCGCTGCATTTGCATTCTGGACCATCCGGTGGCCAGCACCAAGGA
TGGTCTCTCCACGCAGATTATCATTCCACAAAAGCAGGTCGGCCGCAAGT
CGGACATCTATGTGTCGCTTGTGAGCTCCACTCATCAGGTGGCCGCCAAG
GGTTGGTTCGTGGGCATGGTCTCGACCACCGTTGAGACCGAGAACCCGGA
GGTGGAGATCAAGCCTGGCTTGGACTTGCTGGAGCCGATCGCACAAAAGT
TTGTAACCATTTCGGACTATTTGGAGCCGATCGATGATGGATCCGAGTCT
CAAATCTTTATTTCGGAGTCTTACGATGCGACCACGCACTTTGAGACTAC
TTGCCTGGATGTGTTGAACATATTCAAGCGGGGCACTGGCGAGACGTTCG
ACTTCTCCAAGATCAAGCACGAGTTGGGTGACGAGGAGCAGTAAACGGGA
ATGAAGGCCTCATCTGGTTATGGTGCATTTGGACAGCTCAACATCAGCCA
CAAACATCGTAGATCGTCTCAGCGTCGTGGCCAAACCTTAAAAAAAAAAA
TACCCAAGATAAGAAAACCCAAAAAAAAAAAAAAAAAA

LP03430.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:02:17
Subject Length Description Subject Range Query Range Score Percent Strand
Gdi-RA 1938 Gdi-RA 206..1779 756..2329 7855 99.9 Plus
Gdi.c 2215 Gdi.c 206..1779 756..2329 7855 99.9 Plus
Gdi.a 1951 Gdi.a 219..1792 756..2329 7855 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:34:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 9490819..9491409 2320..1731 2845 99.2 Minus
chr2L 23010047 chr2L 9493085..9493587 1258..756 2485 99.6 Minus
chr2L 23010047 chr2L 9491487..9491966 1735..1256 2355 99.4 Minus
chr2L 23010047 chr2L 9761260..9761682 734..312 2115 100 Minus
chr2L 23010047 chr2L 9761744..9762055 312..1 1545 99.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:48:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:34:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9491949..9492547 2329..1731 2980 99.8 Minus
2L 23513712 2L 9494220..9494722 1258..756 2515 100 Minus
2L 23513712 2L 9492625..9493104 1735..1256 2400 100 Minus
2L 23513712 2L 9762421..9762843 734..312 2115 100 Minus
2L 23513712 2L 9762905..9763216 312..1 1560 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:33:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9491949..9492547 2329..1731 2980 99.8 Minus
2L 23513712 2L 9494220..9494722 1258..756 2515 100 Minus
2L 23513712 2L 9492625..9493104 1735..1256 2400 100 Minus
2L 23513712 2L 9762421..9762843 734..312 2115 100 Minus
2L 23513712 2L 9762905..9763216 312..1 1560 100 Minus
Blast to na_te.dros performed on 2019-03-16 11:34:39 has no hits.

LP03430.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:35:37 Download gff for LP03430.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 9490819..9491407 1733..2320 99 <- Minus
chr2L 9491490..9491965 1257..1732 99 <- Minus
chr2L 9493087..9493593 750..1256 94 -- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:13:04 Download gff for LP03430.complete
Subject Subject Range Query Range Percent Splice Strand
Gdi-RA 1..1332 863..2194 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:43:15 Download gff for LP03430.complete
Subject Subject Range Query Range Percent Splice Strand
Gdi-RA 1..1332 863..2194 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:01:38 Download gff for LP03430.complete
Subject Subject Range Query Range Percent Splice Strand
Gdi-RA 1..1332 863..2194 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:35:23 Download gff for LP03430.complete
Subject Subject Range Query Range Percent Splice Strand
Gdi-RA 1..1332 863..2194 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:21:06 Download gff for LP03430.complete
Subject Subject Range Query Range Percent Splice Strand
Gdi-RA 1..1332 863..2194 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:13:04 Download gff for LP03430.complete
Subject Subject Range Query Range Percent Splice Strand
Gdi-RA 204..1770 753..2320 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:43:15 Download gff for LP03430.complete
Subject Subject Range Query Range Percent Splice Strand
Gdi-RA 204..1770 753..2320 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:01:38 Download gff for LP03430.complete
Subject Subject Range Query Range Percent Splice Strand
Gdi-RA 73..1639 753..2320 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:35:24 Download gff for LP03430.complete
Subject Subject Range Query Range Percent Splice Strand
Gdi-RA 204..1770 753..2320 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:21:06 Download gff for LP03430.complete
Subject Subject Range Query Range Percent Splice Strand
Gdi-RA 73..1639 753..2320 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:35:37 Download gff for LP03430.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9491958..9492545 1733..2320 100 <- Minus
2L 9492628..9493103 1257..1732 100 <- Minus
2L 9494222..9494728 750..1256 99 -- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:35:37 Download gff for LP03430.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9491958..9492545 1733..2320 100 <- Minus
2L 9492628..9493103 1257..1732 100 <- Minus
2L 9494222..9494728 750..1256 99 -- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:35:37 Download gff for LP03430.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9491958..9492545 1733..2320 100 <- Minus
2L 9492628..9493103 1257..1732 100 <- Minus
2L 9494222..9494728 750..1256 99 -- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:01:38 Download gff for LP03430.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9491958..9492545 1733..2320 100 <- Minus
arm_2L 9492628..9493103 1257..1732 100 <- Minus
arm_2L 9494222..9494728 750..1256 99 -- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:07:45 Download gff for LP03430.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9491958..9492545 1733..2320 100 <- Minus
2L 9492628..9493103 1257..1732 100 <- Minus
2L 9494222..9494728 750..1256 99 -- Minus

LP03430.pep Sequence

Translation from 862 to 2193

> LP03430.pep
MNEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLE
ELFQRYGLEPPGERFGRGRDWNVDLIPKFLMANGQLVKLLIHTGVTRYLE
FKSIEGSYVYKGGKIAKVPVDQKEALASDLMGMFEKRRFRNFLIYVQDFR
EDDPKTWKDFDPTKANMQGLYDKFGLDKNTQDFTGHALALFRDDEYLNEP
AVNTIRRIKLYSDSLARYGKSPYLYPMYGLGELPQGFARLSAIYGGTYML
DKPIDEIVLGEGGKVVGVRSGEEVAKCKQVYCDPSYVPEKVRKRGKVIRC
ICILDHPVASTKDGLSTQIIIPQKQVGRKSDIYVSLVSSTHQVAAKGWFV
GMVSTTVETENPEVEIKPGLDLLEPIAQKFVTISDYLEPIDDGSESQIFI
SESYDATTHFETTCLDVLNIFKRGTGETFDFSKIKHELGDEEQ*

LP03430.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:54:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21994-PA 443 GF21994-PA 1..443 1..443 2336 99.1 Plus
Dana\GF11718-PA 517 GF11718-PA 7..409 3..373 376 26 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:54:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24025-PA 443 GG24025-PA 1..443 1..443 2346 99.3 Plus
Dere\GG21980-PA 511 GG21980-PA 5..396 1..366 378 25.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:54:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10775-PA 443 GH10775-PA 1..443 1..443 2285 96.4 Plus
Dgri\GH23002-PA 505 GH23002-PA 5..316 1..294 384 29.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:10:56
Subject Length Description Subject Range Query Range Score Percent Strand
Gdi-PC 443 CG4422-PC 1..443 1..443 2318 100 Plus
Gdi-PB 443 CG4422-PB 1..443 1..443 2318 100 Plus
Gdi-PA 443 CG4422-PA 1..443 1..443 2318 100 Plus
Rep-PA 511 CG8432-PA 7..396 3..366 351 26.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:54:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17638-PA 443 GI17638-PA 1..443 1..443 2326 98.2 Plus
Dmoj\GI18968-PA 517 GI18968-PA 5..408 1..380 348 26.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25634-PA 443 GL25634-PA 1..443 1..443 2347 99.3 Plus
Dper\GL11541-PA 522 GL11541-PA 5..448 1..403 372 25.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18172-PA 443 GA18172-PA 1..443 1..443 2347 99.3 Plus
Dpse\GA21074-PA 522 GA21074-PA 5..448 1..403 371 24.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:54:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12441-PA 443 GM12441-PA 1..443 1..443 2350 99.8 Plus
Dsec\GM21968-PA 513 GM21968-PA 5..314 1..288 370 28.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:54:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22354-PA 443 GD22354-PA 1..443 1..443 2350 99.8 Plus
Dsim\GD11461-PA 511 GD11461-PA 5..314 1..288 369 28.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:54:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18203-PA 443 GJ18203-PA 1..443 1..443 2322 98 Plus
Dvir\GJ20912-PA 508 GJ20912-PA 5..402 1..382 362 26.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:54:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24240-PA 443 GK24240-PA 1..443 1..443 2317 98 Plus
Dwil\GK15875-PA 512 GK15875-PA 5..401 1..368 398 26.1 Plus
Dwil\GK24043-PA 412 GK24043-PA 7..334 3..368 208 24.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:54:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10500-PA 443 GE10500-PA 1..443 1..443 2338 98.9 Plus
Dyak\GE12059-PA 511 GE12059-PA 5..396 1..366 392 26.1 Plus

LP03430.hyp Sequence

Translation from 862 to 2193

> LP03430.hyp
MNEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLE
ELFQRYGLEPPGERFGRGRDWNVDLIPKFLMANGQLVKLLIHTGVTRYLE
FKSIEGSYVYKGGKIAKVPVDQKEALASDLMGMFEKRRFRNFLIYVQDFR
EDDPKTWKDFDPTKANMQGLYDKFGLDKNTQDFTGHALALFRDDEYLNEP
AVNTIRRIKLYSDSLARYGKSPYLYPMYGLGELPQGFARLSAIYGGTYML
DKPIDEIVLGEGGKVVGVRSGEEVAKCKQVYCDPSYVPEKVRKRGKVIRC
ICILDHPVASTKDGLSTQIIIPQKQVGRKSDIYVSLVSSTHQVAAKGWFV
GMVSTTVETENPEVEIKPGLDLLEPIAQKFVTISDYLEPIDDGSESQIFI
SESYDATTHFETTCLDVLNIFKRGTGETFDFSKIKHELGDEEQ*

LP03430.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:13:12
Subject Length Description Subject Range Query Range Score Percent Strand
Gdi-PC 443 CG4422-PC 1..443 1..443 2318 100 Plus
Gdi-PB 443 CG4422-PB 1..443 1..443 2318 100 Plus
Gdi-PA 443 CG4422-PA 1..443 1..443 2318 100 Plus
Rep-PA 511 CG8432-PA 7..396 3..366 351 26.1 Plus