Clone LP03545 Report

Search the DGRC for LP03545

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:35
Well:45
Vector:pOT2
Associated Gene/TranscriptCG7031-RA
Protein status:LP03545.pep: gold
Preliminary Size:1493
Sequenced Size:1846

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7031 2002-01-01 Sim4 clustering to Release 2
CG7031 2002-05-30 Blastp of sequenced clone
CG7031 2003-01-01 Sim4 clustering to Release 3
CG7031 2008-04-29 Release 5.5 accounting
CG7031 2008-08-15 Release 5.9 accounting
CG7031 2008-12-18 5.12 accounting

Clone Sequence Records

LP03545.complete Sequence

1846 bp (1846 high quality bases) assembled on 2002-05-30

GenBank Submission: AY118345

> LP03545.complete
CAGCCAGCAGCCGCAGTAAAGGTCTTAGCCCAATCCCAGCCAGAGTTCGA
AGCCCACCAGGCCCAATGGCGAACGTTAATTTGCAGATGCCGCTGATTGC
AGCAGCCACCACCATACTGACAATTGTCAGTGGGGCCACCGCCAGCACCA
CATCCTCGACAGAGACGGCCAAGAACCAGCCATTGTATCACAATATGGGG
TCTTTGTTCGAGAATCGATGGCTGCCAATGGATCAGCCGATGCAGCATCA
TCCCAATCATCGGTATGGCTCGTCCAAAATTCCACGGGCAAATGCGGGTG
AAAGGAGGGCCTTTAGCAGCGGCCATTCCTCAGGCTCCCGGCAAGGATTG
GCCCATATGCTCAACGGACTAACAAATCTCTCGGGCCTGGGACACATTTC
CAATGGGTATGGCTCGGTGGCGCCCACCCATACGGAGGCACTGGCCCTGG
GCTCCACCAAACAGGAGATACCGATTTACGAGGACCACAATGAAGATGCC
ACCGCGGTGGCTGCCGTTGCAGCAGCTGGAGCCCATGATTTTGGCTCGGG
AAATGAACAATCTGGCGGTGGATTGGAGAACAATCAAGAACATTCGCCGA
TTTACAATTATCCCGGTGCCGCACATAATGGTGGATTTTTGCCAGCCTAC
GGTTCAGCTGGATCTGGTCACGAGCAGGACTACGCACAGTGGTCATCATC
GGCGCCGGAGGAGCAGCAGCCGGAACAGCAGGCGGCTCATCCCTATGCGT
ACGATAAAATTTCAATGGGAAATTTCCTGCCGCCGTACATGCAGGACTCT
GGATACGATGACCAGCAGGGGCAGCTTTACCACCAGCAGTTGCAACACCA
ACAACAGCAGCAACAGCAACAGCATCTGCAGCAGCTGCAGCAGCAACAGC
AGCAACTGTACCACCAACAGCAGCAGCAGCAGCAGCAGCGCCAGGAACAG
GAACAGCACTCTTCGTATTTCGGCCACCATGAACCATCCATTTCTGGATC
CGCTGCATCATCGGCTTCATCTGCCTCGAGCGGATCTGGTGCTGATGACT
TTGAGGAGCATCCCGATGCTGGGCAGGAGCAGAGCTCCAACTACTTGTCG
GAGGCAAGTGGTCATGGCCAGGGACACACCCATCACTCGCATCATGTGGA
TATCATTAACTATGTGCCGGTGAAGCATGTGAAGAAGCAGCACGTGCCGG
TGGAGAAGGAGGTGAAGATACCCATATCGCATGCGGTCATCATACCGGTT
CGCAAGCCAGTGCCCATTCACATACCGATCACCAAGAATGTTCACGTGCC
GGTGGAGAAGGAATTAAAGGTTCCAGTGGAGCGACTGATTCCTGTGCCCG
TGGAGAAACACATCCCAGTACCGGTGGAGAAGCATGTGCCCTATCATGTG
GTCAAATATGTGCCCATCAAGGTGCCCAAGCCGTTTCCCGTGAAGGTGCC
CGTCTTCAAGACAGTGCTGCACAAGGTCAAGAGCTGGTGGTAGAATCTAG
GATGTGCACTTTTATAAATCCCATCCTGCATTTCTGCATTTCTGCACCTC
TCATTTGCATCCAGAGCACGCGAATTTCGTTATAGTTATAAGCACATTAC
GCATACGCCACCACGTCATCCCAGCCTTTTGTGTCAGCAAACCAAAGCGA
ACAACATTATGCAGTTTTGCACATTTCGTATTCCATTTTTAATGTCGAGT
TTTAAAATTCATTTAATCCCCGTGATGTACAACAATTTTGTGACTCATTT
AACATTACAACAATTTGCATTAAAATACAAACACGAACGGGAACAGAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LP03545.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:56:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG7031-RA 2004 CG7031-RA 156..1954 1..1799 8995 100 Plus
CG7031.a 2807 CG7031.a 156..1954 1..1799 8995 100 Plus
CG7031.b 2417 CG7031.b 156..1954 1..1799 8995 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:15:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 18628229..18629933 83..1796 8265 98.9 Plus
chr3R 27901430 chr3R 18627746..18627828 1..83 415 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:48:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:15:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22804776..22806492 83..1799 8585 100 Plus
3R 32079331 3R 22804291..22804373 1..83 415 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:29:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 22545607..22547323 83..1799 8585 100 Plus
3R 31820162 3R 22545122..22545204 1..83 415 100 Plus
Blast to na_te.dros performed on 2019-03-16 11:15:12 has no hits.

LP03545.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:15:51 Download gff for LP03545.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 18627746..18627828 1..83 100 -> Plus
chr3R 18628230..18628962 84..816 99 == Plus
chr3R 18629077..18629933 940..1796 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:35:04 Download gff for LP03545.complete
Subject Subject Range Query Range Percent Splice Strand
CG7031-RA 1..1428 66..1493 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:35:27 Download gff for LP03545.complete
Subject Subject Range Query Range Percent Splice Strand
CG7031-RA 1..1428 66..1493 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:09:59 Download gff for LP03545.complete
Subject Subject Range Query Range Percent Splice Strand
CG7031-RA 1..1428 66..1493 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:27:03 Download gff for LP03545.complete
Subject Subject Range Query Range Percent Splice Strand
CG7031-RA 1..1428 66..1493 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:09:24 Download gff for LP03545.complete
Subject Subject Range Query Range Percent Splice Strand
CG7031-RA 1..1428 66..1493 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:07:03 Download gff for LP03545.complete
Subject Subject Range Query Range Percent Splice Strand
CG7031-RA 1..1796 1..1796 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:35:27 Download gff for LP03545.complete
Subject Subject Range Query Range Percent Splice Strand
CG7031-RA 1..1796 1..1796 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:09:59 Download gff for LP03545.complete
Subject Subject Range Query Range Percent Splice Strand
CG7031-RA 1..1796 1..1796 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:27:03 Download gff for LP03545.complete
Subject Subject Range Query Range Percent Splice Strand
CG7031-RA 1..1796 1..1796 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:09:24 Download gff for LP03545.complete
Subject Subject Range Query Range Percent Splice Strand
CG7031-RA 1..1796 1..1796 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:15:51 Download gff for LP03545.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22804291..22804373 1..83 100 -> Plus
3R 22804777..22806489 84..1796 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:15:51 Download gff for LP03545.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22804291..22804373 1..83 100 -> Plus
3R 22804777..22806489 84..1796 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:15:51 Download gff for LP03545.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22804291..22804373 1..83 100 -> Plus
3R 22804777..22806489 84..1796 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:09:59 Download gff for LP03545.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18630013..18630095 1..83 100 -> Plus
arm_3R 18630499..18632211 84..1796 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:59:31 Download gff for LP03545.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22545608..22547320 84..1796 100   Plus
3R 22545122..22545204 1..83 100 -> Plus

LP03545.hyp Sequence

Translation from 2 to 1492

> LP03545.hyp
ASSRSKGLSPIPARVRSPPGPMANVNLQMPLIAAATTILTIVSGATASTT
SSTETAKNQPLYHNMGSLFENRWLPMDQPMQHHPNHRYGSSKIPRANAGE
RRAFSSGHSSGSRQGLAHMLNGLTNLSGLGHISNGYGSVAPTHTEALALG
STKQEIPIYEDHNEDATAVAAVAAAGAHDFGSGNEQSGGGLENNQEHSPI
YNYPGAAHNGGFLPAYGSAGSGHEQDYAQWSSSAPEEQQPEQQAAHPYAY
DKISMGNFLPPYMQDSGYDDQQGQLYHQQLQHQQQQQQQQHLQQLQQQQQ
QLYHQQQQQQQQRQEQEQHSSYFGHHEPSISGSAASSASSASSGSGADDF
EEHPDAGQEQSSNYLSEASGHGQGHTHHSHHVDIINYVPVKHVKKQHVPV
EKEVKIPISHAVIIPVRKPVPIHIPITKNVHVPVEKELKVPVERLIPVPV
EKHIPVPVEKHVPYHVVKYVPIKVPKPFPVKVPVFKTVLHKVKSWW*

LP03545.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:04:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG7031-PB 475 CG7031-PB 1..475 22..496 2535 100 Plus
CG7031-PA 475 CG7031-PA 1..475 22..496 2535 100 Plus
CG7031-PC 474 CG7031-PC 1..474 22..496 2518 99.8 Plus
CG13840-PC 466 CG13840-PC 29..447 75..491 336 27.5 Plus
CG33299-PC 172 CG33299-PC 15..172 339..495 252 34.4 Plus

LP03545.pep Sequence

Translation from 65 to 1492

> LP03545.pep
MANVNLQMPLIAAATTILTIVSGATASTTSSTETAKNQPLYHNMGSLFEN
RWLPMDQPMQHHPNHRYGSSKIPRANAGERRAFSSGHSSGSRQGLAHMLN
GLTNLSGLGHISNGYGSVAPTHTEALALGSTKQEIPIYEDHNEDATAVAA
VAAAGAHDFGSGNEQSGGGLENNQEHSPIYNYPGAAHNGGFLPAYGSAGS
GHEQDYAQWSSSAPEEQQPEQQAAHPYAYDKISMGNFLPPYMQDSGYDDQ
QGQLYHQQLQHQQQQQQQQHLQQLQQQQQQLYHQQQQQQQQRQEQEQHSS
YFGHHEPSISGSAASSASSASSGSGADDFEEHPDAGQEQSSNYLSEASGH
GQGHTHHSHHVDIINYVPVKHVKKQHVPVEKEVKIPISHAVIIPVRKPVP
IHIPITKNVHVPVEKELKVPVERLIPVPVEKHIPVPVEKHVPYHVVKYVP
IKVPKPFPVKVPVFKTVLHKVKSWW*

LP03545.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:19:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16714-PA 461 GF16714-PA 1..461 1..475 1384 69.8 Plus
Dana\GF18280-PA 459 GF18280-PA 328..428 358..458 228 43.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:19:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11168-PA 466 GG11168-PA 1..466 1..475 1722 85.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:19:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22327-PA 450 GH22327-PA 1..450 1..475 845 47 Plus
Dgri\GH23916-PA 455 GH23916-PA 1..455 1..475 831 46.2 Plus
Dgri\GH18278-PA 443 GH18278-PA 305..417 358..470 224 40.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:25:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG7031-PB 475 CG7031-PB 1..475 1..475 2535 100 Plus
CG7031-PA 475 CG7031-PA 1..475 1..475 2535 100 Plus
CG7031-PC 474 CG7031-PC 1..474 1..475 2518 99.8 Plus
CG13840-PC 466 CG13840-PC 29..447 54..470 336 27.5 Plus
CG33299-PC 172 CG33299-PC 15..172 318..474 252 34.4 Plus
CG33299-PB 193 CG33299-PB 36..193 318..474 252 34.4 Plus
CG16886-PB 358 CG16886-PB 194..307 354..467 190 42.5 Plus
CG16886-PA 373 CG16886-PA 194..307 354..467 190 42.5 Plus
CG16885-PA 270 CG16885-PA 87..190 372..471 186 48.1 Plus
CG30101-PA 328 CG30101-PA 46..174 350..472 182 38.3 Plus
CG16711-PC 1497 CG16711-PC 1347..1468 227..346 182 37.3 Plus
CG16885-PA 270 CG16885-PA 95..204 352..463 179 41.4 Plus
Sp1-PB 520 CG1343-PB 273..499 100..361 179 26.7 Plus
Sp1-PD 715 CG1343-PD 468..694 100..361 179 26.7 Plus
Sp1-PE 720 CG1343-PE 473..699 100..361 179 26.7 Plus
Sp1-PF 726 CG1343-PF 468..694 100..361 179 26.7 Plus
Smr-PG 3607 CG4013-PG 172..286 209..326 178 38.7 Plus
CG16886-PB 358 CG16886-PB 23..229 317..471 177 30.4 Plus
CG16886-PA 373 CG16886-PA 23..229 317..471 177 30.4 Plus
CG17233-PI 772 CG17233-PI 310..468 203..353 176 32.1 Plus
CG17233-PD 772 CG17233-PD 310..468 203..353 176 32.1 Plus
ovo-PA 975 CG6824-PA 318..491 217..355 176 31 Plus
CG17233-PH 1006 CG17233-PH 579..737 203..353 176 32.1 Plus
CG17233-PE 1007 CG17233-PE 580..738 203..353 176 32.1 Plus
ovo-PD 1028 CG6824-PD 371..544 217..355 176 31 Plus
CG17233-PA 1173 CG17233-PA 310..468 203..353 176 32.1 Plus
ovo-PC 1222 CG6824-PC 743..916 217..355 176 31 Plus
ovo-PE 1351 CG6824-PE 872..1045 217..355 176 31 Plus
ovo-PB 1351 CG6824-PB 872..1045 217..355 176 31 Plus
CG17233-PG 1443 CG17233-PG 580..738 203..353 176 32.1 Plus
CG17233-PF 1464 CG17233-PF 601..759 203..353 176 32.1 Plus
CG17233-PC 1465 CG17233-PC 602..760 203..353 176 32.1 Plus
Smr-PF 3601 CG4013-PF 151..280 197..326 175 33.8 Plus
Smr-PE 3601 CG4013-PE 151..280 197..326 175 33.8 Plus
Smr-PD 3601 CG4013-PD 151..280 197..326 175 33.8 Plus
sbb-PH 2302 CG5580-PH 1833..2072 115..412 174 26.5 Plus
sbb-PD 2302 CG5580-PD 1833..2072 115..412 174 26.5 Plus
sbb-PG 2312 CG5580-PG 1843..2082 115..412 174 26.5 Plus
sbb-PJ 2330 CG5580-PJ 1843..2082 115..412 174 26.5 Plus
CG16711-PC 1497 CG16711-PC 1280..1442 203..329 172 31.9 Plus
Tet-PA 2860 CG43444-PA 58..197 225..365 171 31.6 Plus
Tet-PE 2866 CG43444-PE 58..197 225..365 171 31.6 Plus
Tet-PB 2915 CG43444-PB 58..197 225..365 171 31.6 Plus
Tet-PF 2921 CG43444-PF 58..197 225..365 171 31.6 Plus
CG13138-PC 549 CG13138-PC 152..301 331..464 169 33.1 Plus
CG13138-PB 549 CG13138-PB 152..301 331..464 169 33.1 Plus
ctrip-PE 2930 CG42574-PE 534..718 174..339 169 31.4 Plus
ctrip-PA 3140 CG17735-PB 744..928 174..339 169 31.4 Plus
ctrip-PB 3140 CG42574-PB 744..928 174..339 169 31.4 Plus
dl-PB 677 CG6667-PB 442..601 210..382 168 31.6 Plus
dl-PA 677 CG6667-PA 442..601 210..382 168 31.6 Plus
dl-PE 677 CG6667-PE 442..601 210..382 168 31.6 Plus
dl-PD 677 CG6667-PD 442..601 210..382 168 31.6 Plus
ctrip-PJ 2929 CG42574-PJ 534..700 174..321 168 32.9 Plus
cpo-PP 841 CG43738-PP 670..826 145..305 167 32.2 Plus
Sp1-PB 520 CG1343-PB 266..492 70..305 163 28.9 Plus
Sp1-PD 715 CG1343-PD 461..687 70..305 163 28.9 Plus
Sp1-PE 720 CG1343-PE 466..692 70..305 163 28.9 Plus
Sp1-PF 726 CG1343-PF 461..687 70..305 163 28.9 Plus
CG16886-PB 358 CG16886-PB 202..315 354..467 161 38.3 Plus
CG16886-PA 373 CG16886-PA 202..315 354..467 161 38.3 Plus
CG30101-PA 328 CG30101-PA 201..311 359..465 153 36.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:19:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21995-PA 450 GI21995-PA 1..450 1..475 905 50.7 Plus
Dmoj\GI10774-PA 463 GI10774-PA 325..442 358..475 214 43.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:19:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20045-PA 375 GA20045-PA 1..375 1..475 942 55.2 Plus
Dpse\GA12562-PA 424 GA12562-PA 291..403 358..470 215 46.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:19:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26469-PA 474 GM26469-PA 1..474 1..475 1779 90.4 Plus
Dsec\GM23608-PA 465 GM23608-PA 336..446 360..470 221 48.6 Plus
Dsec\GM19551-PA 239 GM19551-PA 116..239 354..474 152 35.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:19:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20985-PA 471 GD20985-PA 1..471 1..475 1821 91 Plus
Dsim\GD18419-PA 781 GD18419-PA 650..762 358..470 225 47.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:19:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14349-PA 465 GJ14349-PA 13..465 1..475 921 52.8 Plus
Dvir\GJ14372-PA 407 GJ14372-PA 271..381 360..470 211 45 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:20:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11477-PA 456 GK11477-PA 1..262 1..248 482 48 Plus
Dwil\GK11617-PA 401 GK11617-PA 265..375 360..470 260 45 Plus
Dwil\GK14655-PA 168 GK14655-PA 59..168 375..474 147 42.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:20:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10334-PA 493 GE10334-PA 1..493 1..475 1599 83.3 Plus
Dyak\GE24000-PA 461 GE24000-PA 236..430 256..458 219 31.7 Plus