Clone LP03547 Report

Search the DGRC for LP03547

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:35
Well:47
Vector:pOT2
Associated Gene/TranscriptCG5844-RA
Protein status:LP03547.pep: gold
Preliminary Size:1512
Sequenced Size:1426

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5844 2001-01-01 Release 2 assignment
CG5844 2001-11-12 Blastp of sequenced clone
CG5844 2003-01-01 Sim4 clustering to Release 3
CG5844 2008-04-29 Release 5.5 accounting
CG5844 2008-08-15 Release 5.9 accounting
CG5844 2008-12-18 5.12 accounting

Clone Sequence Records

LP03547.complete Sequence

1426 bp (1426 high quality bases) assembled on 2001-11-12

GenBank Submission: AY069730

> LP03547.complete
CACAAAACGGTGGCAGCTCTGTAAGACAATTACTATCGAATTGTTTTTAC
GAAATCTGACCAATATTTAATTTTCCGATCATGCTTCGCAAATTTGGAGG
TCTGTTGGCCCAGCAGGTGGGTCAGCAAGCACGTTTCACCGCCGCGAGTC
GCACATTTTCCTCGACAAAAGCGCTGCACAAAGATCCAGCGACCCAGGAA
GCAGAGGCGGCGCCACCGAAGAACATCCTTGTGGAAAAGGATAAGAACAT
CACGCTGATCGGCATCAATCGACCGCAGCAGCGTAATGCCATCGATTCGC
TTACTGCATCGCAGCTTTGCGACGCCTTCGCCAATTTCGAGGCGGACGAC
ACGTCGCCGGTGGCCGTGCTGTACGGCGTGGGCGGCTCCTTTTGCTCCGG
CTTCGACATCCTGGAGATTAGCACCGACGAGAAGGAGGAGATCAGCGTGG
ACATCCTGATGCGACCGGAGGGCTCCGTGGGTCCCACGCGTCGCCAGATC
AAGAAGCCGGTCGTGTGCGGCATCAATGGCTACTGCATAGCCAACGGTCT
GGAGCTGGCTCTCATGTGCGATCTGCGCGTGATGGAGGAGTCCGCAGTAC
TGGGATTTTTCAATCGACGCTTTGGAGTGCCAATGCTCGATGCCGGCACC
ATCCGGCTGCCGGCTATGATTGGATTGTCGCGTGCCCTGGACCTGATACT
TACGGGACGTCCGGTGGGCTCCCAGGAGGCCCACGACATTGGACTGGTCA
ACAGGATTGTGCCCACAGGCACGGCCTTGGGCAATGCCCTGGAGCTGGCC
ACCTGTCTGGCCAAGTTCCCGCAACGCGCGCTCATCCACGATCGCAACTC
GGTCTACTCGAGCACGTTCGAGACCTCAACGTTCCACCAGGCGGTGCAGA
ATGAGGTGATGTTCACGTCCCGTGAAATCATCGAGGACATGCAGAACGGC
ATCAAATGGTTCAACCAGACCTTCAAGCCGGACACCACGCATTCGTGGCT
AAAGCGCGACCGCTCGATGGCCGACTGGGACGATGAGGAAGTGGCTGAGG
CTGCAGCGCAGAAGGAAAAACTAAAACAGGAGCAGGAGGCTGCTCTGGCT
GAGGCCGAAAAGCAAAAGCAGGCTGAAAAGGCGCAGAAAAGGTCGAAGAA
GACCGAGGAAAGTGCGGCTGAAAGTGTCGATAGTAAAGATCCCAAGGATA
AGCCAAACGAAAAGTAGTTGTGCCATATCCAAACAAAATTATCTGTTCCA
AATCATTTAATTTAATTTTGTACATAACGCACCTATTACCAGTTTCAAAC
TGATCCATTCGACCTTTCTAACTTATTCAAATACATTTCCGTAAACGGAT
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAA

LP03547.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:56:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG5844-RA 1565 CG5844-RA 87..1440 1..1354 6770 100 Plus
CG5844.a 1335 CG5844.a 55..1332 77..1354 6390 100 Plus
CG5611.a 1388 CG5611.a 486..564 550..628 200 83.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 8259803..8260590 182..969 3925 99.9 Plus
chr3R 27901430 chr3R 8260650..8261031 970..1351 1895 99.7 Plus
chr3R 27901430 chr3R 8259627..8259733 77..183 535 100 Plus
chr3R 27901430 chr3R 8259490..8259566 1..77 370 98.7 Plus
chr3R 27901430 chr3R 23458422..23458500 628..550 200 83.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:48:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:06:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12434415..12435202 182..969 3940 100 Plus
3R 32079331 3R 12435262..12435646 970..1354 1925 100 Plus
3R 32079331 3R 12434239..12434345 77..183 535 100 Plus
3R 32079331 3R 12434102..12434178 1..77 385 100 Plus
3R 32079331 3R 27635513..27635591 628..550 200 83.5 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:21:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 12175246..12176033 182..969 3940 100 Plus
3R 31820162 3R 12176093..12176477 970..1354 1925 100 Plus
3R 31820162 3R 12175070..12175176 77..183 535 100 Plus
3R 31820162 3R 12174933..12175009 1..77 385 100 Plus
3R 31820162 3R 27376344..27376422 628..550 200 83.5 Minus
Blast to na_te.dros performed on 2019-03-16 02:06:35 has no hits.

LP03547.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:07:32 Download gff for LP03547.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 8259490..8259566 1..77 98 -> Plus
chr3R 8259628..8259733 78..183 100 -> Plus
chr3R 8259805..8260590 184..969 99 -> Plus
chr3R 8260650..8261031 970..1351 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:35:05 Download gff for LP03547.complete
Subject Subject Range Query Range Percent Splice Strand
CG5844-RA 1..1137 81..1217 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:28:07 Download gff for LP03547.complete
Subject Subject Range Query Range Percent Splice Strand
CG5844-RA 1..1137 81..1217 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:11:17 Download gff for LP03547.complete
Subject Subject Range Query Range Percent Splice Strand
CG5844-RA 1..1137 81..1217 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:55:44 Download gff for LP03547.complete
Subject Subject Range Query Range Percent Splice Strand
CG5844-RA 1..1137 81..1217 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:58:00 Download gff for LP03547.complete
Subject Subject Range Query Range Percent Splice Strand
CG5844-RA 1..1137 81..1217 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:05:11 Download gff for LP03547.complete
Subject Subject Range Query Range Percent Splice Strand
CG5844-RA 1..1351 1..1351 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:28:07 Download gff for LP03547.complete
Subject Subject Range Query Range Percent Splice Strand
CG5844-RA 1..1351 1..1351 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:11:17 Download gff for LP03547.complete
Subject Subject Range Query Range Percent Splice Strand
CG5844-RA 1..1351 1..1351 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:55:44 Download gff for LP03547.complete
Subject Subject Range Query Range Percent Splice Strand
CG5844-RA 1..1351 1..1351 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:58:00 Download gff for LP03547.complete
Subject Subject Range Query Range Percent Splice Strand
CG5844-RA 5..1355 1..1351 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:07:32 Download gff for LP03547.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12434102..12434178 1..77 100 -> Plus
3R 12434240..12434345 78..183 100 -> Plus
3R 12434417..12435202 184..969 100 -> Plus
3R 12435262..12435643 970..1351 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:07:32 Download gff for LP03547.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12434102..12434178 1..77 100 -> Plus
3R 12434240..12434345 78..183 100 -> Plus
3R 12434417..12435202 184..969 100 -> Plus
3R 12435262..12435643 970..1351 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:07:32 Download gff for LP03547.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12434102..12434178 1..77 100 -> Plus
3R 12434240..12434345 78..183 100 -> Plus
3R 12434417..12435202 184..969 100 -> Plus
3R 12435262..12435643 970..1351 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:11:17 Download gff for LP03547.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8259824..8259900 1..77 100 -> Plus
arm_3R 8259962..8260067 78..183 100 -> Plus
arm_3R 8260139..8260924 184..969 100 -> Plus
arm_3R 8260984..8261365 970..1351 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:31:48 Download gff for LP03547.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12175248..12176033 184..969 100 -> Plus
3R 12176093..12176474 970..1351 100   Plus
3R 12174933..12175009 1..77 100 -> Plus
3R 12175071..12175176 78..183 100 -> Plus

LP03547.pep Sequence

Translation from 80 to 1216

> LP03547.pep
MLRKFGGLLAQQVGQQARFTAASRTFSSTKALHKDPATQEAEAAPPKNIL
VEKDKNITLIGINRPQQRNAIDSLTASQLCDAFANFEADDTSPVAVLYGV
GGSFCSGFDILEISTDEKEEISVDILMRPEGSVGPTRRQIKKPVVCGING
YCIANGLELALMCDLRVMEESAVLGFFNRRFGVPMLDAGTIRLPAMIGLS
RALDLILTGRPVGSQEAHDIGLVNRIVPTGTALGNALELATCLAKFPQRA
LIHDRNSVYSSTFETSTFHQAVQNEVMFTSREIIEDMQNGIKWFNQTFKP
DTTHSWLKRDRSMADWDDEEVAEAAAQKEKLKQEQEAALAEAEKQKQAEK
AQKRSKKTEESAAESVDSKDPKDKPNEK*

LP03547.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:29:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17958-PA 375 GF17958-PA 1..375 1..377 1632 85.2 Plus
Dana\GF18700-PA 353 GF18700-PA 65..339 44..316 821 54.7 Plus
Dana\GF11161-PA 293 GF11161-PA 48..267 55..269 231 28.1 Plus
Dana\GF11465-PA 299 GF11465-PA 37..218 49..227 220 31 Plus
Dana\GF20237-PA 318 GF20237-PA 61..257 60..244 160 27.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:29:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18938-PA 378 GG18938-PA 1..378 1..378 1965 97.4 Plus
Dere\GG12104-PA 329 GG12104-PA 11..325 21..330 872 52.1 Plus
Dere\GG22466-PA 294 GG22466-PA 47..268 53..269 257 29.1 Plus
Dere\GG22562-PA 299 GG22562-PA 26..218 41..227 214 31.3 Plus
Dere\GG14742-PA 262 GG14742-PA 7..186 47..226 150 22.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:29:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21207-PA 382 GH21207-PA 1..382 1..374 1488 79.3 Plus
Dgri\GH21648-PA 328 GH21648-PA 41..324 49..330 827 54.7 Plus
Dgri\GH20865-PA 293 GH20865-PA 48..267 55..269 247 29.2 Plus
Dgri\GH22640-PA 298 GH22640-PA 18..218 21..228 235 31.5 Plus
Dgri\GH11876-PA 272 GH11876-PA 14..200 47..227 155 25 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:49:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG5844-PA 378 CG5844-PA 1..378 1..378 1924 100 Plus
CG5611-PC 326 CG5611-PC 28..325 34..330 832 54.3 Plus
CG5611-PA 326 CG5611-PA 28..325 34..330 832 54.3 Plus
Echs1-PA 295 CG6543-PA 42..269 47..269 259 29.7 Plus
Echs1-PB 295 CG6543-PB 42..269 47..269 259 29.7 Plus
CG8778-PA 299 CG8778-PA 26..236 41..245 220 30.5 Plus
Dci-PA 262 CG13890-PA 7..186 47..226 155 22.8 Plus
CG9577-PA 312 CG9577-PA 55..268 60..260 152 27 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:29:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10483-PA 386 GI10483-PA 1..349 1..349 1597 84.9 Plus
Dmoj\GI10748-PA 324 GI10748-PA 19..323 22..330 837 52.9 Plus
Dmoj\GI20973-PA 293 GI20973-PA 48..267 55..269 253 28.9 Plus
Dmoj\GI21154-PA 301 GI21154-PA 30..220 40..227 228 31.1 Plus
Dmoj\GI15664-PA 275 GI15664-PA 9..206 36..227 158 25.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:29:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27313-PA 313 GL27313-PA 8..313 74..378 1391 89.5 Plus
Dper\GL13773-PA 302 GL13773-PA 19..293 49..321 825 55.4 Plus
Dper\GL16995-PA 296 GL16995-PA 75..270 79..269 210 29.2 Plus
Dper\GL19219-PA 787 GL19219-PA 6..313 1..291 165 25.3 Plus
Dper\GL13079-PA 319 GL13079-PA 62..275 60..260 163 29.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:29:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19173-PA 379 GA19173-PA 1..379 1..378 1682 87.6 Plus
Dpse\GA19005-PB 325 GA19005-PB 17..316 21..321 816 52 Plus
Dpse\GA19673-PB 296 GA19673-PB 51..270 55..269 251 29.6 Plus
Dpse\GA19673-PA 296 GA19673-PA 51..270 55..269 251 29.6 Plus
Dpse\GA21314-PA 298 GA21314-PA 36..217 49..227 206 29.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:29:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24034-PA 374 GM24034-PA 1..374 1..378 1963 97.6 Plus
Dsec\GM16334-PA 326 GM16334-PA 28..325 34..330 865 53.7 Plus
Dsec\GM23251-PA 156 GM23251-PA 1..155 178..330 362 46.8 Plus
Dsec\GM20252-PA 294 GM20252-PA 49..268 55..269 262 30.2 Plus
Dsec\GM20345-PA 233 GM20345-PA 7..152 81..227 172 31.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:29:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18835-PA 378 GD18835-PA 1..378 1..378 2006 98.9 Plus
Dsim\GD18069-PA 318 GD18069-PA 20..309 34..321 864 54 Plus
Dsim\GD25738-PA 294 GD25738-PA 49..268 55..269 262 30.2 Plus
Dsim\GD25824-PA 299 GD25824-PA 3..218 1..227 215 30.6 Plus
Dsim\GD13579-PA 262 GD13579-PA 7..186 47..226 149 22.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:29:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23164-PA 385 GJ23164-PA 1..385 1..378 1513 82.9 Plus
Dvir\GJ10690-PA 332 GJ10690-PA 28..331 24..330 822 51.9 Plus
Dvir\GJ20693-PA 293 GJ20693-PA 48..267 55..269 260 29.8 Plus
Dvir\GJ21004-PA 281 GJ21004-PA 19..200 49..227 223 32.1 Plus
Dvir\GJ19197-PA 274 GJ19197-PA 19..205 47..227 160 25.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:29:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14405-PA 390 GK14405-PA 25..390 24..378 1470 84.2 Plus
Dwil\GK11326-PA 320 GK11326-PA 29..320 41..330 858 56.7 Plus
Dwil\GK17937-PA 295 GK17937-PA 50..269 55..269 246 28.5 Plus
Dwil\GK15915-PA 302 GK15915-PA 40..221 49..227 230 32.1 Plus
Dwil\GK17361-PA 262 GK17361-PA 9..191 49..229 160 25.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:29:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26195-PA 378 GE26195-PA 1..378 1..378 1997 98.7 Plus
Dyak\GE10552-PA 310 GE10552-PA 10..309 32..330 869 53.6 Plus
Dyak\GE13337-PA 294 GE13337-PA 47..268 53..269 262 29.5 Plus
Dyak\GE13432-PA 299 GE13432-PA 26..218 41..227 216 31.3 Plus

LP03547.hyp Sequence

Translation from 80 to 1216

> LP03547.hyp
MLRKFGGLLAQQVGQQARFTAASRTFSSTKALHKDPATQEAEAAPPKNIL
VEKDKNITLIGINRPQQRNAIDSLTASQLCDAFANFEADDTSPVAVLYGV
GGSFCSGFDILEISTDEKEEISVDILMRPEGSVGPTRRQIKKPVVCGING
YCIANGLELALMCDLRVMEESAVLGFFNRRFGVPMLDAGTIRLPAMIGLS
RALDLILTGRPVGSQEAHDIGLVNRIVPTGTALGNALELATCLAKFPQRA
LIHDRNSVYSSTFETSTFHQAVQNEVMFTSREIIEDMQNGIKWFNQTFKP
DTTHSWLKRDRSMADWDDEEVAEAAAQKEKLKQEQEAALAEAEKQKQAEK
AQKRSKKTEESAAESVDSKDPKDKPNEK*

LP03547.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:53:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG5844-PA 378 CG5844-PA 1..378 1..378 1924 100 Plus
CG5611-PC 326 CG5611-PC 28..325 34..330 832 54.3 Plus
CG5611-PA 326 CG5611-PA 28..325 34..330 832 54.3 Plus
CG6543-PA 295 CG6543-PA 42..269 47..269 259 29.7 Plus
CG6543-PB 295 CG6543-PB 42..269 47..269 259 29.7 Plus