Clone LP03584 Report

Search the DGRC for LP03584

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:35
Well:84
Vector:pOT2
Associated Gene/Transcriptfidipidine-RA
Protein status:LP03584.pep: gold
Sequenced Size:1929

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7773 2005-08-05 Manual selection by Sue Celniker
fidipidine 2008-04-29 Release 5.5 accounting
fidipidine 2008-04-29 Picked prior to 5.5
fidipidine 2008-08-15 Release 5.9 accounting
fidipidine 2008-12-18 5.12 accounting

Clone Sequence Records

LP03584.complete Sequence

1929 bp assembled on 2007-10-25

GenBank Submission: BT031141

> LP03584.complete
AAGATAAGCAATAGCTTTCGGGCCTTAAATAGCATGTAATTGTGATTGTT
CATGGCTAACCGCGATGTATTCTCAAAGATCCTGCCAAATGTCAAGTTGG
GCACCCGCTACGACGAGGATGGGCGTGAAGTTCAGGTGGAGCGTCGCGAG
GACTCGGATGCCACGGCCAAGGAGCAGGACACCTTCGACATACTGGTGGC
AGCCGGATATTATCGTGCCCGCATCAAGGGCTTATCCGCATTCGATAAGG
TTGTGGGCGGTATGACTTGGTGCATCGAATGCTGCGACTACGATGTGGAC
GTGGACCTTCTGTTCCATGAGAGTCTGTCCATTGGACAGAAGATTGCCTT
GGTGGAGAAGATCGTAGCCGTCCTGATTGACATGAAGTGCCCACACAGCC
TGGAACCCCATCAAGTGCAGGGTCTGGAATTCTTGGCCATACATCCCGTC
ATCCAGTGGCTAGTTAAGACCTCTGTGGAAAACCGAGCGGAGCGTGGGCA
GCGCTTGAAGAGATTTGCCATCGGCCAGTTTCATAATCACTATCAGTACA
AAAGCGACAAGGACAATCTCACTAAAATACGCCTGGCCTCCACAAACATT
AAGGCTATACAGGATCTGTACGGCCCCAGGAGGCAGTACGAACGCCAAGA
AGCTCCTGATGATGATGATGATGTGTCCAGGGTGCGTCTTACTCTTTTAG
AATACGGAGATCCAGGACCGACCTTTAGGAGCAGCGCTGAAAGAAAGGCG
GATCGGGGTCCTGGAGAAAAAGATGAGCTCGATCTGGAGGAGTATCTTCG
CAGCTTATCTCTCATCAAAGATGACCCGACGGGCACTCAAAAGCGCATTG
ATCTCGATCCTACAGCACGGCAAGAGCTTCAACAGCACTATGCTGAATTC
AAGCTGGAAATGGAGACGGATGCCCAAGAGTTGAAATCACAAAACCAACA
AAAACGTCTCGAGGCGGCCAAAATTGCTATGGAACATAAGATTAGACGTT
ACTGCAAGGAAAACGAACAGCTGCAAGATGCTGAAAATGAGCAGAAAGAA
AAGACCAAGGAAGTGGAGGACCAATTGAATACCTTAAATACTGAGCTCAA
AGCACACAAAGATACACAGGATAAAGCAGATCCAAAGCTCCTCGAAAAAA
TACAGAGTTTGCTGCAACAACATGAAGAGCTGAAGAAAAGCGAGGCGGAA
TTCAAGGAATCTTGTCGCACCGATTTGGCCAATCTACAGCTGCAAATCGA
TGACCTGGAATCATTTAGTGCCCAAGACGCGGAAGCACAAGCCGCAGCAT
TGGCCGGTGAGGAGCAACGTCTGAAGGAGCTGCGCCTGCAGTTGGCCAAG
AGAAATCGCGGAATTGTGGCCATCGAACGAAAACTTGATGCCATTCCTGA
TCGCACAGAGCTGGCCCAATACCAGAGACGTTTCCACGAACTGCACAACG
AGATGAGCGGCAAGCATCTGGAAACCAAGCAATATTACACCCTGTACAAC
ACACTCAACGACAAAAAGCGCTACATGGAAAAGGAACTGGCCCTACTTAA
CTCCATCTGCGAAGCGTACAACGAGGGTATGATGAGTCCGCACGGCCGCG
AGGACTTTATCCGCCAGTTTGAGTCCATCGTGGACGGCGTTAAGAGTGCC
CAGGACAAGGTGCGTCACAAGTACAACGAGGAGCGGATGCGTCGCGACGA
GCTGAACGAGGAGCTGCAATCGCTGCTGGAACTGCAGCGCCAGTATGCTC
TGGCTGTCAAGCAGCTAACCCGCGAGTGCCAGCGCTGCGAGCAGCTGCAA
CTGCAGCTCAGGTCAATTAGGGGCAGGACCCAGTCCTAGCCCATTTTAAC
TATTGATTACTAAACACGAAACACTCTTAGCGTATTCGTTCAATAAATTA
TAACGCCCCAAAAAAAAAAAAAAAAAAAA

LP03584.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:35:27
Subject Length Description Subject Range Query Range Score Percent Strand
fidipidine-RA 2109 fidipidine-RA 98..2009 1..1912 9560 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:37:00
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 12149637..12150295 1909..1251 3295 100 Minus
chr2R 21145070 chr2R 12150530..12150891 1137..776 1810 100 Minus
chr2R 21145070 chr2R 12150956..12151258 777..475 1515 100 Minus
chr2R 21145070 chr2R 12151506..12151717 344..133 1060 100 Minus
chr2R 21145070 chr2R 12151767..12151904 138..1 690 100 Minus
chr2R 21145070 chr2R 12151312..12151444 477..345 665 100 Minus
chr2R 21145070 chr2R 12150361..12150474 1250..1137 570 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:48:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:36:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16262281..16262942 1912..1251 3310 100 Minus
2R 25286936 2R 16263177..16263538 1137..776 1810 100 Minus
2R 25286936 2R 16263603..16263905 777..475 1515 100 Minus
2R 25286936 2R 16264153..16264364 344..133 1060 100 Minus
2R 25286936 2R 16264414..16264551 138..1 690 100 Minus
2R 25286936 2R 16263959..16264091 477..345 665 100 Minus
2R 25286936 2R 16263008..16263121 1250..1137 570 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:32:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 16263480..16264141 1912..1251 3310 100 Minus
2R 25260384 2R 16264376..16264737 1137..776 1810 100 Minus
2R 25260384 2R 16264802..16265104 777..475 1515 100 Minus
2R 25260384 2R 16265352..16265563 344..133 1060 100 Minus
2R 25260384 2R 16265613..16265750 138..1 690 100 Minus
2R 25260384 2R 16265158..16265290 477..345 665 100 Minus
2R 25260384 2R 16264207..16264320 1250..1137 570 100 Minus
Blast to na_te.dros performed 2019-03-16 04:36:59
Subject Length Description Subject Range Query Range Score Percent Strand
BS 5142 BS BS 5142bp 1632..1727 788..880 121 61.5 Plus

LP03584.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:37:43 Download gff for LP03584.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 12149637..12150295 1251..1909 100 <- Minus
chr2R 12150361..12150474 1137..1250 100 <- Minus
chr2R 12150531..12150889 778..1136 100 <- Minus
chr2R 12150956..12151258 475..777 100 <- Minus
chr2R 12151315..12151444 345..474 100 <- Minus
chr2R 12151506..12151714 136..344 100 <- Minus
chr2R 12151770..12151904 1..135 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:35:07 Download gff for LP03584.complete
Subject Subject Range Query Range Percent Splice Strand
fidipidine-RA 1..1788 52..1839 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:05:17 Download gff for LP03584.complete
Subject Subject Range Query Range Percent Splice Strand
fidipidine-RA 1..1788 52..1839 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:36:46 Download gff for LP03584.complete
Subject Subject Range Query Range Percent Splice Strand
fidipidine-RA 1..1788 52..1839 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:51:35 Download gff for LP03584.complete
Subject Subject Range Query Range Percent Splice Strand
fidipidine-RA 1..1788 52..1839 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:46:17 Download gff for LP03584.complete
Subject Subject Range Query Range Percent Splice Strand
fidipidine-RA 1..1788 52..1839 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 16:58:18 Download gff for LP03584.complete
Subject Subject Range Query Range Percent Splice Strand
fidipidine-RA 66..1904 1..1839 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:05:17 Download gff for LP03584.complete
Subject Subject Range Query Range Percent Splice Strand
fidipidine-RA 71..1979 1..1909 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:36:46 Download gff for LP03584.complete
Subject Subject Range Query Range Percent Splice Strand
fidipidine-RA 69..1977 1..1909 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:51:35 Download gff for LP03584.complete
Subject Subject Range Query Range Percent Splice Strand
fidipidine-RA 66..1904 1..1839 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:46:17 Download gff for LP03584.complete
Subject Subject Range Query Range Percent Splice Strand
fidipidine-RA 69..1977 1..1909 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:37:43 Download gff for LP03584.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16263962..16264091 345..474 100 <- Minus
2R 16262284..16262942 1251..1909 100 <- Minus
2R 16263008..16263121 1137..1250 100 <- Minus
2R 16263178..16263536 778..1136 100 <- Minus
2R 16263603..16263905 475..777 100 <- Minus
2R 16264153..16264361 136..344 100 <- Minus
2R 16264417..16264551 1..135 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:37:43 Download gff for LP03584.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16263962..16264091 345..474 100 <- Minus
2R 16262284..16262942 1251..1909 100 <- Minus
2R 16263008..16263121 1137..1250 100 <- Minus
2R 16263178..16263536 778..1136 100 <- Minus
2R 16263603..16263905 475..777 100 <- Minus
2R 16264153..16264361 136..344 100 <- Minus
2R 16264417..16264551 1..135 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:37:43 Download gff for LP03584.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16263962..16264091 345..474 100 <- Minus
2R 16262284..16262942 1251..1909 100 <- Minus
2R 16263008..16263121 1137..1250 100 <- Minus
2R 16263178..16263536 778..1136 100 <- Minus
2R 16263603..16263905 475..777 100 <- Minus
2R 16264153..16264361 136..344 100 <- Minus
2R 16264417..16264551 1..135 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:36:46 Download gff for LP03584.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12149789..12150447 1251..1909 100 <- Minus
arm_2R 12150513..12150626 1137..1250 100 <- Minus
arm_2R 12150683..12151041 778..1136 100 <- Minus
arm_2R 12151108..12151410 475..777 100 <- Minus
arm_2R 12151467..12151596 345..474 100 <- Minus
arm_2R 12151658..12151866 136..344 100 <- Minus
arm_2R 12151922..12152056 1..135 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:57:26 Download gff for LP03584.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16265616..16265750 1..135 100   Minus
2R 16264377..16264735 778..1136 100 <- Minus
2R 16264802..16265104 475..777 100 <- Minus
2R 16265161..16265290 345..474 100 <- Minus
2R 16263483..16264141 1251..1909 100 <- Minus
2R 16264207..16264320 1137..1250 100 <- Minus
2R 16265352..16265560 136..344 100 <- Minus

LP03584.pep Sequence

Translation from 51 to 1838

> LP03584.pep
MANRDVFSKILPNVKLGTRYDEDGREVQVERREDSDATAKEQDTFDILVA
AGYYRARIKGLSAFDKVVGGMTWCIECCDYDVDVDLLFHESLSIGQKIAL
VEKIVAVLIDMKCPHSLEPHQVQGLEFLAIHPVIQWLVKTSVENRAERGQ
RLKRFAIGQFHNHYQYKSDKDNLTKIRLASTNIKAIQDLYGPRRQYERQE
APDDDDDVSRVRLTLLEYGDPGPTFRSSAERKADRGPGEKDELDLEEYLR
SLSLIKDDPTGTQKRIDLDPTARQELQQHYAEFKLEMETDAQELKSQNQQ
KRLEAAKIAMEHKIRRYCKENEQLQDAENEQKEKTKEVEDQLNTLNTELK
AHKDTQDKADPKLLEKIQSLLQQHEELKKSEAEFKESCRTDLANLQLQID
DLESFSAQDAEAQAAALAGEEQRLKELRLQLAKRNRGIVAIERKLDAIPD
RTELAQYQRRFHELHNEMSGKHLETKQYYTLYNTLNDKKRYMEKELALLN
SICEAYNEGMMSPHGREDFIRQFESIVDGVKSAQDKVRHKYNEERMRRDE
LNEELQSLLELQRQYALAVKQLTRECQRCEQLQLQLRSIRGRTQS*

LP03584.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:00:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11277-PA 597 GF11277-PA 1..594 1..595 2707 86.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:00:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22284-PA 594 GG22284-PA 1..594 1..595 3011 95 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:00:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19756-PA 589 GH19756-PA 1..587 1..589 2448 80.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:56:19
Subject Length Description Subject Range Query Range Score Percent Strand
fidipidine-PA 595 CG7773-PA 1..595 1..595 3049 100 Plus
rgn-PD 800 CG6014-PD 349..657 226..585 171 24.5 Plus
rgn-PA 800 CG6014-PA 349..657 226..585 171 24.5 Plus
rgn-PC 808 CG6014-PC 357..665 226..585 171 24.5 Plus
rgn-PB 808 CG6014-PB 357..665 226..585 171 24.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:00:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20294-PA 577 GI20294-PA 1..575 1..589 2228 79.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:01:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11357-PA 595 GL11357-PA 1..595 1..595 2612 84.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:01:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20578-PA 595 GA20578-PA 1..595 1..595 2561 84.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:01:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20072-PA 594 GM20072-PA 1..594 1..595 3082 97.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:01:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25553-PA 594 GD25553-PA 1..594 1..595 3091 98 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:01:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22021-PA 589 GJ22021-PA 1..588 1..590 2325 80.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:01:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21435-PA 592 GK21435-PA 1..592 1..593 2521 80.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:01:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14080-PA 594 GE14080-PA 1..594 1..595 2971 95.8 Plus

LP03584.hyp Sequence

Translation from 51 to 1838

> LP03584.hyp
MANRDVFSKILPNVKLGTRYDEDGREVQVERREDSDATAKEQDTFDILVA
AGYYRARIKGLSAFDKVVGGMTWCIECCDYDVDVDLLFHESLSIGQKIAL
VEKIVAVLIDMKCPHSLEPHQVQGLEFLAIHPVIQWLVKTSVENRAERGQ
RLKRFAIGQFHNHYQYKSDKDNLTKIRLASTNIKAIQDLYGPRRQYERQE
APDDDDDVSRVRLTLLEYGDPGPTFRSSAERKADRGPGEKDELDLEEYLR
SLSLIKDDPTGTQKRIDLDPTARQELQQHYAEFKLEMETDAQELKSQNQQ
KRLEAAKIAMEHKIRRYCKENEQLQDAENEQKEKTKEVEDQLNTLNTELK
AHKDTQDKADPKLLEKIQSLLQQHEELKKSEAEFKESCRTDLANLQLQID
DLESFSAQDAEAQAAALAGEEQRLKELRLQLAKRNRGIVAIERKLDAIPD
RTELAQYQRRFHELHNEMSGKHLETKQYYTLYNTLNDKKRYMEKELALLN
SICEAYNEGMMSPHGREDFIRQFESIVDGVKSAQDKVRHKYNEERMRRDE
LNEELQSLLELQRQYALAVKQLTRECQRCEQLQLQLRSIRGRTQS*

LP03584.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:40:23
Subject Length Description Subject Range Query Range Score Percent Strand
fidipidine-PA 595 CG7773-PA 1..595 1..595 3049 100 Plus
rgn-PD 800 CG6014-PD 349..657 226..585 171 24.5 Plus
rgn-PA 800 CG6014-PA 349..657 226..585 171 24.5 Plus
rgn-PC 808 CG6014-PC 357..665 226..585 171 24.5 Plus
rgn-PB 808 CG6014-PB 357..665 226..585 171 24.5 Plus