Clone LP03706 Report

Search the DGRC for LP03706

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:37
Well:6
Vector:pOT2
Associated Gene/TranscriptCG1806-RA
Protein status:LP03706.pep: gold
Preliminary Size:1699
Sequenced Size:1641

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1806 2001-01-01 Release 2 assignment
CG1806 2001-07-04 Blastp of sequenced clone
CG1806 2003-01-01 Sim4 clustering to Release 3
CG1806 2008-04-29 Release 5.5 accounting
CG1806 2008-08-15 Release 5.9 accounting
CG1806 2008-12-18 5.12 accounting

Clone Sequence Records

LP03706.complete Sequence

1641 bp (1641 high quality bases) assembled on 2001-07-04

GenBank Submission: AY052036

> LP03706.complete
GTACAGTTGCACTCACGATCCGTCCAATCCGCTTATATTTTTATTTTTTA
TTATTTTTTTAGTTCAGCTTCAGTTCGATTTTGTTTTGATTTCAGTTCGT
TTTTAGTTCAGTTTTTCTTTTTTTTTTTGTGAACGCTGCTTTCCCCGCCT
TCGCTGTTCTCCATCGCAACGATTCCGAATCGGATTTTCGTTTTTCTGTT
GCGAATGCAGCCGAGAGTACTATGCTCGTAGCACTTGGAGCGCTGCTTCC
GCCTGGTTATCTCCTAGTTCCGGAATGTCCATCTAGCCAGGCGATTGGGA
AGTCATGCCAGTGCAGCAAGTGCGTCCCGTGAGCACCTACGACAACTTGG
GCGTCTCTCAGTCCAGGCAGCTGACGGCCGGAATGGCTGGCGAACCGGAA
ACGGAAGTCGAAGTGGAGCTCAATGGCAGCCACACCAGCCATAGCATAGC
CGCTGTGAAGGCGGCTCTGAACGATGCCAAGTCCAAGTTCTTCGGCATCA
ACAACTATGAGTCACCCATGGCCAGTAAGAGTGCAGCAGTGACGACGATT
GCCAAACCGGAGCCAAGATATCAAAATGTTCCGCAACGCGACGAACTGCC
GGCAGTGGCTGCTCCCGATCCTCCAGCGCAACCAGCACAGCCGACGGCTC
CAGTTAGCGATCATAGTAGGGCACTGCGCTATGCGACCACCTACGAACAG
ATTCCACTCAGCGACATGGAAGCACCGCAGGCATCGCAGGCCGTCTACAT
GAGCACCACAGTGCCGCAGAACATGAAGGGCATGAAGATCGCCGGACGAC
ATACGCCAACTCGCAACAGCCTCAGGCACAGCCGCATGATCGTTGTCAAT
CACAAAAACCACGACAGTCTCCAGGCCACCAGGAATCTGAATATATCTCG
CCAGCTTCTGGTTATGCAATTAGCTGTGGGCCTGTTCATCGTGGGTCTTG
CCGTTTGGATACTAATCCTAGCCCCCAATGCGTCCATATTGATCAATCCG
TATCTGAGTGGATTGTCGCTGCTATTGGCCAGCATTGCGGGGCTCATACT
GCTGCGAAGGGATCACAAGATCACGGAGCACAGACCGCAGACCAATAGTT
GCTACAAGGTCCTGCTGGCCGAGTCGTATGTGTTCACTGGCCTGGCGTTG
ATCTTCTGCTGCTTGGCCCTCGTCTGTGCGGCAATTGAGTTCGCGGAGCT
CATCTCATCCGCAGACGGAGAATGTGGACCAACATCGAGCTCATTGCTTA
GCTATCACAATTGCACCTGCTTGGCGGCAGGTGAGGTGGTGGCCAACTAC
TCCTCCGAGGCTCCAATGGCATTTGCAGTTGGTCAGGAGGAGGCGTCACA
AAACGATGGTTGTGCCGAGCTTCGGATCGAATGGAAGTATCTGCTCGCCT
TCTCCATGGCGCTCAACACTTTGGGCATTGTTGCAACATTCTTATACATA
ACGTTATTTATTTGTTGCCACCGCAAGCGAGAACACTTTTACACGTCTGT
GTAGGGATATATTGTAACTTAAATTCAACATACTACTTAAATTATTTTTA
GCAACTGATACAAATTACAAATAAATTATTTTTTATATCTAAGTACCATT
AAAGTAACACAACGTTTAAAAACAAAAAAAAAAAAAAAAAA

LP03706.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:27:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG1806-RA 1696 CG1806-RA 43..1668 1..1626 8130 100 Plus
CG1806.a 1583 CG1806.a 19..1583 62..1626 7825 100 Plus
CG1492-RA 2367 CG1492-RA 2169..2367 1626..1428 995 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:34:47
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 11899249..11899788 201..740 2700 100 Plus
chrX 22417052 chrX 11900323..11900655 1018..1350 1635 99.4 Plus
chrX 22417052 chrX 11900715..11900987 1351..1623 1365 100 Plus
chrX 22417052 chrX 11898284..11898484 1..201 1005 100 Plus
chrX 22417052 chrX 11900106..11900257 867..1018 760 100 Plus
chrX 22417052 chrX 11899851..11899981 738..868 655 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:48:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:34:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12008166..12008705 201..740 2700 100 Plus
X 23542271 X 12009240..12009572 1018..1350 1665 100 Plus
X 23542271 X 12009632..12009907 1351..1626 1380 100 Plus
X 23542271 X 12007201..12007401 1..201 1005 100 Plus
X 23542271 X 12009023..12009174 867..1018 760 100 Plus
X 23542271 X 12008768..12008898 738..868 655 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:50:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 12016264..12016803 201..740 2700 100 Plus
X 23527363 X 12017338..12017670 1018..1350 1665 100 Plus
X 23527363 X 12017730..12018005 1351..1626 1380 100 Plus
X 23527363 X 12015299..12015499 1..201 1005 100 Plus
X 23527363 X 12017121..12017272 867..1018 760 100 Plus
X 23527363 X 12016866..12016996 738..868 655 100 Plus
Blast to na_te.dros performed on 2019-03-16 11:34:45 has no hits.

LP03706.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:35:40 Download gff for LP03706.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 11900324..11900655 1019..1350 99 -> Plus
chrX 11898284..11898484 1..201 100 -> Plus
chrX 11899250..11899787 202..739 100 -> Plus
chrX 11899853..11899979 740..866 100 -> Plus
chrX 11900106..11900257 867..1018 100 -> Plus
chrX 11900715..11900987 1351..1623 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:35:09 Download gff for LP03706.complete
Subject Subject Range Query Range Percent Splice Strand
CG1806-RA 1..1200 305..1504 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:14:25 Download gff for LP03706.complete
Subject Subject Range Query Range Percent Splice Strand
CG1806-RA 1..1200 305..1504 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:02:16 Download gff for LP03706.complete
Subject Subject Range Query Range Percent Splice Strand
CG1806-RA 1..1200 305..1504 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:45:46 Download gff for LP03706.complete
Subject Subject Range Query Range Percent Splice Strand
CG1806-RA 1..1200 305..1504 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:21:11 Download gff for LP03706.complete
Subject Subject Range Query Range Percent Splice Strand
CG1806-RA 1..1200 305..1504 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:07:35 Download gff for LP03706.complete
Subject Subject Range Query Range Percent Splice Strand
CG1806-RA 24..1646 1..1623 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:14:25 Download gff for LP03706.complete
Subject Subject Range Query Range Percent Splice Strand
CG1806-RA 24..1646 1..1623 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:02:16 Download gff for LP03706.complete
Subject Subject Range Query Range Percent Splice Strand
CG1806-RA 26..1648 1..1623 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:45:46 Download gff for LP03706.complete
Subject Subject Range Query Range Percent Splice Strand
CG1806-RA 24..1646 1..1623 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:21:11 Download gff for LP03706.complete
Subject Subject Range Query Range Percent Splice Strand
CG1806-RA 26..1648 1..1623 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:35:40 Download gff for LP03706.complete
Subject Subject Range Query Range Percent Splice Strand
X 12007201..12007401 1..201 100 -> Plus
X 12008167..12008704 202..739 100 -> Plus
X 12008770..12008896 740..866 100 -> Plus
X 12009023..12009174 867..1018 100 -> Plus
X 12009241..12009572 1019..1350 100 -> Plus
X 12009632..12009904 1351..1623 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:35:40 Download gff for LP03706.complete
Subject Subject Range Query Range Percent Splice Strand
X 12007201..12007401 1..201 100 -> Plus
X 12008167..12008704 202..739 100 -> Plus
X 12008770..12008896 740..866 100 -> Plus
X 12009023..12009174 867..1018 100 -> Plus
X 12009241..12009572 1019..1350 100 -> Plus
X 12009632..12009904 1351..1623 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:35:40 Download gff for LP03706.complete
Subject Subject Range Query Range Percent Splice Strand
X 12007201..12007401 1..201 100 -> Plus
X 12008167..12008704 202..739 100 -> Plus
X 12008770..12008896 740..866 100 -> Plus
X 12009023..12009174 867..1018 100 -> Plus
X 12009241..12009572 1019..1350 100 -> Plus
X 12009632..12009904 1351..1623 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:02:16 Download gff for LP03706.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11901234..11901434 1..201 100 -> Plus
arm_X 11902200..11902737 202..739 100 -> Plus
arm_X 11902803..11902929 740..866 100 -> Plus
arm_X 11903056..11903207 867..1018 100 -> Plus
arm_X 11903274..11903605 1019..1350 100 -> Plus
arm_X 11903665..11903937 1351..1623 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:23:35 Download gff for LP03706.complete
Subject Subject Range Query Range Percent Splice Strand
X 12015299..12015499 1..201 100 -> Plus
X 12016265..12016802 202..739 100 -> Plus
X 12016868..12016994 740..866 100 -> Plus
X 12017121..12017272 867..1018 100 -> Plus
X 12017339..12017670 1019..1350 100 -> Plus
X 12017730..12018002 1351..1623 100   Plus

LP03706.pep Sequence

Translation from 304 to 1503

> LP03706.pep
MPVQQVRPVSTYDNLGVSQSRQLTAGMAGEPETEVEVELNGSHTSHSIAA
VKAALNDAKSKFFGINNYESPMASKSAAVTTIAKPEPRYQNVPQRDELPA
VAAPDPPAQPAQPTAPVSDHSRALRYATTYEQIPLSDMEAPQASQAVYMS
TTVPQNMKGMKIAGRHTPTRNSLRHSRMIVVNHKNHDSLQATRNLNISRQ
LLVMQLAVGLFIVGLAVWILILAPNASILINPYLSGLSLLLASIAGLILL
RRDHKITEHRPQTNSCYKVLLAESYVFTGLALIFCCLALVCAAIEFAELI
SSADGECGPTSSSLLSYHNCTCLAAGEVVANYSSEAPMAFAVGQEEASQN
DGCAELRIEWKYLLAFSMALNTLGIVATFLYITLFICCHRKREHFYTSV*

LP03706.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:02:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19557-PA 408 GF19557-PA 1..406 1..399 1036 56.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:02:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17701-PA 399 GG17701-PA 1..399 1..399 1816 89.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:02:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12903-PA 469 GH12903-PA 5..469 4..399 1040 51.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:44:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG1806-PB 399 CG1806-PB 1..399 1..399 2039 100 Plus
CG1806-PA 399 CG1806-PA 1..399 1..399 2039 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:02:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15849-PA 403 GI15849-PA 1..403 1..399 1065 57.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:02:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15886-PA 421 GL15886-PA 1..421 1..399 1313 67 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:02:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14777-PA 424 GA14777-PA 1..424 1..399 1296 68.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:02:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13248-PA 402 GM13248-PA 1..402 1..399 1789 93.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:02:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19419-PA 400 GJ19419-PA 1..400 1..399 1072 57.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:02:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10138-PA 408 GK10138-PA 5..408 4..399 1212 64.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:02:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16488-PA 399 GE16488-PA 1..399 1..399 1713 88.8 Plus

LP03706.hyp Sequence

Translation from 304 to 1503

> LP03706.hyp
MPVQQVRPVSTYDNLGVSQSRQLTAGMAGEPETEVEVELNGSHTSHSIAA
VKAALNDAKSKFFGINNYESPMASKSAAVTTIAKPEPRYQNVPQRDELPA
VAAPDPPAQPAQPTAPVSDHSRALRYATTYEQIPLSDMEAPQASQAVYMS
TTVPQNMKGMKIAGRHTPTRNSLRHSRMIVVNHKNHDSLQATRNLNISRQ
LLVMQLAVGLFIVGLAVWILILAPNASILINPYLSGLSLLLASIAGLILL
RRDHKITEHRPQTNSCYKVLLAESYVFTGLALIFCCLALVCAAIEFAELI
SSADGECGPTSSSLLSYHNCTCLAAGEVVANYSSEAPMAFAVGQEEASQN
DGCAELRIEWKYLLAFSMALNTLGIVATFLYITLFICCHRKREHFYTSV*

LP03706.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:48:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG1806-PB 399 CG1806-PB 1..399 1..399 2039 100 Plus
CG1806-PA 399 CG1806-PA 1..399 1..399 2039 100 Plus