Clone LP03784 Report

Search the DGRC for LP03784

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:37
Well:84
Vector:pOT2
Associated Gene/Transcriptegr-RB
Protein status:LP03784.pep: gold
Sequenced Size:2133

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12919 2003-01-01 Sim4 clustering to Release 3
CG12919 2005-01-26 Blastp of sequenced clone
egr 2008-04-29 Release 5.5 accounting
egr 2008-08-15 Release 5.9 accounting
egr 2008-12-18 5.12 accounting

Clone Sequence Records

LP03784.complete Sequence

2133 bp (2133 high quality bases) assembled on 2005-01-26

GenBank Submission: BT021371

> LP03784.complete
CGAACGGACGTTTAAAGTGAGAAAAGAAACCGGTAAATCAGAGATCCCAA
GCAAGCGCGTGCGTGCATGATAGCGAAGAAAAAAAGCTATCCGTTTCAGT
TAACTACTTACCAAGATTGAATTTCGCCATCGGGCAAATTACTAAAAATA
CATAAGTGCAACTCGTCCACTGTGTGTTGTGTTTTTTTTTTTTTTTTTGG
TTTTCGCTGTGCCTTTATCGCAAACAAGAACTGATAAAACTAGAAAATAT
CTTGAGAAACTTGTTTTCGCGCTTTTCTTTTGCTAATTGCCGATCGCGGA
AGAGAAAAACAAGCAGTAGACAAAACAAGTGTGGTAATACAATCTGAAAA
GGGCACCATCAGCAGCCCGAGGGGTTTATCTATATAGATGTCGCAGCTTA
TCATCTCATGCTGTCTGTGAGGTTGTTCTGTGTGCTCGTGTAGTATCTTA
AATACATAGAGTGTGTTCATATAAAGTGCGACAAAGCTCGATTGGAAACA
GCTGTCGAGTGCCCTTGAGTGGGTGGGCAAGATCGTCATCATCATCATCG
TCGTCATTATCAACAGAATCAGCATCAGCATCTGGAGGCCCCGGTTGCTC
TAAGATCCCCAGTGTTCATCAATTATGACTGCCGAGACCCTCAAGCCGTT
TATAACGCCAACGAGTGCCAACGATGATGGTTTTCCGGCCAAAGCGACCA
GCACGGCGACCGCCCAGCGACGCACCCGCCAGCTGATCCCCCTGGTTTTG
GGGTTCATCGGTCTGGGGCTGGTCGTTGCCATTCTCGCACTAACGATCTG
GCAGACAACGCGTGTATCGCATCTGGACAAGGAGCTGAAGAGCCTGAAGC
GAGTCGTCGATAATCTCCAGCAGCGTTTGGGCATAAACTATCTGGACGAG
TTCGACGAGTTCCAAAAGGAGTACGAGAATGCCCTCATCGACTATCCAAA
AAAGGTGGATGGCCTCACGGATGAGGAGGACGACGACGATGGCGATGGTC
TGGATTCCATTGCGGACGACGAGGACGACGACGTTAGCTATAGCTCTGTG
GATGATGTTGGCGCAGACTACGAGGACTACACCGATATGTTAAATAAACT
CAACAATGCACATACCGGCACCACGCCCACATCTGAGACCACTGCTGAGG
GCGAGGGCGAGACGGACAGTGCATCCTCAGCCTCAAATGATGACAATGTG
TTCGATGACTTTACCAGCTACAATGCCCACAAAAAGAAGCAGGAGAGAAA
ATCTCGCTCGATTGCCGATGTACGCAATGAGGAGCAGAATATTCAAGGAA
ATCACACAGAGCTTCAGGAAAAGTCATCCAATGAGGCAACTTCCAAAGAG
AGCCCTGCACCACTTCACCACCGTCGCAGAATGCATTCCCGCCATCGCCA
CCTCCTAGTCCGCAAAGCCAGATCCGAGGACTCGAGGCCAGCAGCCCATT
TCCACTTGAGCAGCAGGCGGCGTCACCAAGGAAGTATGGGCTACCATGGA
GATATGTACATAGGAAATGATAACGAGAGAAACTCTTATCAGGGACACTT
TCAAACGCGCGATGGCGTCTTGACGGTGACCAATACAGGCCTATATTACG
TATACGCCCAGATATGCTACAACAACTCGCACGACCAGAACGGATTTATC
GTCTTTCAAGGAGACACTCCATTCCTGCAGTGCTTGAACACGGTGCCCAC
CAACATGCCACATAAGGTGCACACCTGCCACACGAGTGGTCTGATCCACC
TGGAACGAAACGAGAGGATCCATCTGAAGGACATTCACAACGATCGCAAT
GCAGTTCTGCGGGAGGGAAACAACCGAAGCTACTTTGGCATCTTCAAGGT
GTAAATTGGAGAGATTATCCCCGGTCAGAAGATGGAATACCAGTTTAAGC
TTTTGTCCCCGCGACTGCTCGTGAATGCGATTCATCGCCAGCGTGAATCC
ATTAGTTCGTAGTACCTAGTCTTAGTCACTCCAAACCTAATCTCAATCGG
AATCGTGCATACTGCATTAGTCAGAAGACGGAGGAAAATCATATTTATTT
TGTATATACTCGTTCGACTCTAAAAAGTGAATAAAAATATATGTAGCTAT
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LP03784.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:43:53
Subject Length Description Subject Range Query Range Score Percent Strand
egr-RB 2309 egr-RB 106..2207 1..2102 10510 100 Plus
egr-RA 2327 egr-RA 106..1522 1..1417 7085 100 Plus
egr-RA 2327 egr-RA 1539..2225 1416..2102 3435 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:16:12
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 5965927..5966721 1..795 3960 99.9 Plus
chr2R 21145070 chr2R 5971117..5971729 1489..2101 3050 99.8 Plus
chr2R 21145070 chr2R 5970184..5970511 920..1247 1625 99.7 Plus
chr2R 21145070 chr2R 5969047..5969173 795..921 635 100 Plus
chr2R 21145070 chr2R 5970572..5970678 1246..1352 535 100 Plus
chr2R 21145070 chr2R 5970964..5971038 1416..1490 360 98.7 Plus
chr2R 21145070 chr2R 5970804..5970870 1351..1417 335 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:48:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:16:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10078388..10079182 1..795 3975 100 Plus
2R 25286936 2R 10083573..10084186 1489..2102 3070 100 Plus
2R 25286936 2R 10082640..10082967 920..1247 1640 100 Plus
2R 25286936 2R 10081506..10081632 795..921 635 100 Plus
2R 25286936 2R 10083028..10083134 1246..1352 535 100 Plus
2R 25286936 2R 10083420..10083494 1416..1490 375 100 Plus
2R 25286936 2R 10083260..10083326 1351..1417 335 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:33:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 10079587..10080381 1..795 3975 100 Plus
2R 25260384 2R 10084772..10085385 1489..2102 3070 100 Plus
2R 25260384 2R 10083839..10084166 920..1247 1640 100 Plus
2R 25260384 2R 10082705..10082831 795..921 635 100 Plus
2R 25260384 2R 10084227..10084333 1246..1352 535 100 Plus
2R 25260384 2R 10084619..10084693 1416..1490 375 100 Plus
2R 25260384 2R 10084459..10084525 1351..1417 335 100 Plus
Blast to na_te.dros performed 2019-03-16 18:16:10
Subject Length Description Subject Range Query Range Score Percent Strand
G7 1192 G7 G7 1192bp 327..423 1412..1506 118 63.3 Plus

LP03784.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:17:03 Download gff for LP03784.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 5970574..5970678 1248..1352 100 -> Plus
chr2R 5970806..5970870 1353..1417 100 -> Plus
chr2R 5970966..5971037 1418..1489 98 -> Plus
chr2R 5965927..5966457 1..531 99 == Plus
chr2R 5966509..5966721 583..795 100 -> Plus
chr2R 5969048..5969173 796..921 100 -> Plus
chr2R 5970186..5970511 922..1247 99 -> Plus
chr2R 5971118..5971729 1490..2101 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:35:10 Download gff for LP03784.complete
Subject Subject Range Query Range Percent Splice Strand
egr-RB 1..1230 625..1854 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:12:21 Download gff for LP03784.complete
Subject Subject Range Query Range Percent Splice Strand
egr-RB 1..1230 625..1854 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:12:16 Download gff for LP03784.complete
Subject Subject Range Query Range Percent Splice Strand
egr-RB 1..1230 625..1854 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:56:56 Download gff for LP03784.complete
Subject Subject Range Query Range Percent Splice Strand
egr-RB 1..1230 625..1854 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:36:23 Download gff for LP03784.complete
Subject Subject Range Query Range Percent Splice Strand
egr-RB 1..1230 625..1854 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:07:01 Download gff for LP03784.complete
Subject Subject Range Query Range Percent Splice Strand
egr-RB 24..2124 1..2101 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:12:21 Download gff for LP03784.complete
Subject Subject Range Query Range Percent Splice Strand
egr-RB 24..2124 1..2101 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:12:16 Download gff for LP03784.complete
Subject Subject Range Query Range Percent Splice Strand
egr-RB 23..2123 1..2101 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:56:56 Download gff for LP03784.complete
Subject Subject Range Query Range Percent Splice Strand
egr-RB 24..2124 1..2101 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:36:23 Download gff for LP03784.complete
Subject Subject Range Query Range Percent Splice Strand
egr-RB 23..2123 1..2101 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:17:03 Download gff for LP03784.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10081507..10081632 796..921 100 -> Plus
2R 10078388..10079182 1..795 100 -> Plus
2R 10082642..10082967 922..1247 100 -> Plus
2R 10083030..10083134 1248..1352 100 -> Plus
2R 10083262..10083326 1353..1417 100 -> Plus
2R 10083422..10083493 1418..1489 100 -> Plus
2R 10083574..10084185 1490..2101 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:17:03 Download gff for LP03784.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10081507..10081632 796..921 100 -> Plus
2R 10078388..10079182 1..795 100 -> Plus
2R 10082642..10082967 922..1247 100 -> Plus
2R 10083030..10083134 1248..1352 100 -> Plus
2R 10083262..10083326 1353..1417 100 -> Plus
2R 10083422..10083493 1418..1489 100 -> Plus
2R 10083574..10084185 1490..2101 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:17:03 Download gff for LP03784.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10081507..10081632 796..921 100 -> Plus
2R 10078388..10079182 1..795 100 -> Plus
2R 10082642..10082967 922..1247 100 -> Plus
2R 10083030..10083134 1248..1352 100 -> Plus
2R 10083262..10083326 1353..1417 100 -> Plus
2R 10083422..10083493 1418..1489 100 -> Plus
2R 10083574..10084185 1490..2101 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:12:16 Download gff for LP03784.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5965893..5966687 1..795 100 -> Plus
arm_2R 5969012..5969137 796..921 100 -> Plus
arm_2R 5970147..5970472 922..1247 100 -> Plus
arm_2R 5970535..5970639 1248..1352 100 -> Plus
arm_2R 5970767..5970831 1353..1417 100 -> Plus
arm_2R 5970927..5970998 1418..1489 100 -> Plus
arm_2R 5971079..5971690 1490..2101 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:32:15 Download gff for LP03784.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10079587..10080381 1..795 100 -> Plus
2R 10082706..10082831 796..921 100 -> Plus
2R 10083841..10084166 922..1247 100 -> Plus
2R 10084229..10084333 1248..1352 100 -> Plus
2R 10084461..10084525 1353..1417 100 -> Plus
2R 10084621..10084692 1418..1489 100 -> Plus
2R 10084773..10085384 1490..2101 100   Plus

LP03784.hyp Sequence

Translation from 624 to 1853

> LP03784.hyp
MTAETLKPFITPTSANDDGFPAKATSTATAQRRTRQLIPLVLGFIGLGLV
VAILALTIWQTTRVSHLDKELKSLKRVVDNLQQRLGINYLDEFDEFQKEY
ENALIDYPKKVDGLTDEEDDDDGDGLDSIADDEDDDVSYSSVDDVGADYE
DYTDMLNKLNNAHTGTTPTSETTAEGEGETDSASSASNDDNVFDDFTSYN
AHKKKQERKSRSIADVRNEEQNIQGNHTELQEKSSNEATSKESPAPLHHR
RRMHSRHRHLLVRKARSEDSRPAAHFHLSSRRRHQGSMGYHGDMYIGNDN
ERNSYQGHFQTRDGVLTVTNTGLYYVYAQICYNNSHDQNGFIVFQGDTPF
LQCLNTVPTNMPHKVHTCHTSGLIHLERNERIHLKDIHNDRNAVLREGNN
RSYFGIFKV*

LP03784.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:25:34
Subject Length Description Subject Range Query Range Score Percent Strand
egr-PB 409 CG12919-PB 1..409 1..409 2162 100 Plus
egr-PA 415 CG12919-PA 1..415 1..409 2145 98.6 Plus

LP03784.pep Sequence

Translation from 624 to 1853

> LP03784.pep
MTAETLKPFITPTSANDDGFPAKATSTATAQRRTRQLIPLVLGFIGLGLV
VAILALTIWQTTRVSHLDKELKSLKRVVDNLQQRLGINYLDEFDEFQKEY
ENALIDYPKKVDGLTDEEDDDDGDGLDSIADDEDDDVSYSSVDDVGADYE
DYTDMLNKLNNAHTGTTPTSETTAEGEGETDSASSASNDDNVFDDFTSYN
AHKKKQERKSRSIADVRNEEQNIQGNHTELQEKSSNEATSKESPAPLHHR
RRMHSRHRHLLVRKARSEDSRPAAHFHLSSRRRHQGSMGYHGDMYIGNDN
ERNSYQGHFQTRDGVLTVTNTGLYYVYAQICYNNSHDQNGFIVFQGDTPF
LQCLNTVPTNMPHKVHTCHTSGLIHLERNERIHLKDIHNDRNAVLREGNN
RSYFGIFKV*

LP03784.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 15:54:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12016-PA 423 GF12016-PA 1..423 1..409 1195 63.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 15:54:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24136-PA 416 GG24136-PA 1..416 1..409 1806 91.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 15:54:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21919-PA 439 GH21919-PA 1..439 1..409 928 50.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:12:20
Subject Length Description Subject Range Query Range Score Percent Strand
egr-PB 409 CG12919-PB 1..409 1..409 2162 100 Plus
egr-PA 415 CG12919-PA 1..415 1..409 2145 98.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 15:54:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19269-PA 428 GI19269-PA 1..428 1..409 834 46.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 15:54:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17605-PA 426 GL17605-PA 1..426 1..409 1053 52.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 15:54:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24841-PA 424 GA24841-PA 1..424 1..409 1045 52.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 15:54:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21182-PA 415 GM21182-PA 1..415 1..409 2139 96.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 15:54:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10713-PA 415 GD10713-PA 1..415 1..409 2145 96.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 15:55:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22146-PA 416 GJ22146-PA 17..416 56..409 728 46.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 15:55:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20644-PA 452 GK20644-PA 1..452 1..409 902 50.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 15:55:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19335-PA 409 GE19335-PA 1..409 1..409 1813 92.8 Plus