Clone LP03867 Report

Search the DGRC for LP03867

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:38
Well:67
Vector:pOT2
Associated Gene/TranscriptCG3517-RA
Protein status:LP03867.pep: gold
Sequenced Size:1395

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3517 2008-04-29 Release 5.5 accounting
CG3517 2008-04-29 Picked prior to 5.5
CG3517 2008-08-15 Release 5.9 accounting
CG3517 2008-12-18 5.12 accounting

Clone Sequence Records

LP03867.complete Sequence

1395 bp assembled on 2007-11-15

GenBank Submission: BT031274

> LP03867.complete
AACTAGTTAGAAAAAAACTTTTAGGTAAAAAATTCGAAAATTGTTCATGC
TGCAAGGAGTAGCGAACAGCATCAAAATAGAGGTAAGACCGATTCGCGAT
GCAGGCCCATCATGCGATGCCCGATTTCCGATGCCGGAATAATTGCCAGC
ACAAGGAGTGCCAGAGGCATGCTCCTTTGGGCATAATCGATCAGCACACC
CAGTGCAAGTGCTTGGGCGAGGTAAATGCCTCATCGATTTTCCTAGAAAA
TGTCCTGGACCTGGCCAACACTTTGGCCCAGGTGATGATCATCTGTGGAC
TGCACGAGTGCAAAGCGAAATCAACCGTGGACATTATCACATATGCCTTC
TTGCATTACGATCAGGTGTGCTATTGCATTGATACCACGCCCAAGAAGCG
ACTGAGAAAGGAGGATTTGTTCCACGAGCTGGGCAAGAAGTCGCTGATGA
ACAAGGTGGAGGCCCACTTGGCCTATGCCATCATCAAGAGGGGATTCAAG
GCCTTCTACTACGAGCCGAAAGTGGACTTGACCTACGATGAGCAAGGCAG
ACCCTCGTACAACGATGAATGCGTCTGGGTCCACGCAGCCAGGAAGTCAG
CCGAGTCCTATGCCCGCTTCGATGGCCTCTCCTGCGCCGAACAGTTGGCA
TACGAGGCCAAGATCAAAATAGCCTTCAAGAAGTTCTACGATCGCATGCA
GACGCGCAAGAGGCAGCCGGAGGGCGACGATTGCAACTGCTGCTTCTGTG
CCAAGAAGCGGGGACATCTGGTCTATGCCAAGGAACCGACTCCCTGCACT
TCCAACAAAAAGAAGCCCAAGCACGTGTGTCCATATTGCTGCAAGAAGAA
GCAGAAGCAGCAGTACACACACCCTGCTCGCCAGCCGGCCAAGTGCCCCA
AGTGCCACAAGTCGCGCAAGTTCTGCTGCTGCACCAAAATGGACTTCAAC
TTGCAGTGGGTCAAGAGCATATGGGAGCGGCCGGACTTCAATCAGTACTA
CAAGAACGAGATCGCCGAAATCGAGGACCGCCTGGTCAAGGGAACCTGCT
GGCTGCCGCCGGAGCCTGAGGAGAAGCTGCTCGATGAGGGCGAGGGCGAG
GAGGAGGAGGAAGCCCACCAGGAAATGTCGCCGGAGGCTCTCCTCGCCCT
CGGCGGCAAAACGGTGCCCACTATACCGGATGAAGGAAACGGTTCTCCAC
TGGCCACCAAACAGCCGTCGATCACCGAGGGTGAGGGCGAGACCTAAGTT
TGAAGGATCCTGCGAATCGGCGCTTGCTAGATTTCTAAATTTTACTTTAC
TCTTGAGGAAAGCAGTTCTCAAAATTTTCAGTTCCAGCTGTTCTTCAACA
ATTTATCATTAAAGTTGTACTCAAGCTAAAAAAAAAAAAAAAAAA

LP03867.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:35:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG3517-RA 1443 CG3517-RA 45..1422 1..1378 6890 100 Plus
CG3517.a 1195 CG3517.a 127..1141 364..1378 5075 100 Plus
CG3517.a 1195 CG3517.a 47..130 1..84 420 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:36:45
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 15247667..15249043 1377..1 6825 99.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:48:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:36:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19423778..19425155 1378..1 6890 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:32:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 19164609..19165986 1378..1 6890 100 Minus
Blast to na_te.dros performed on 2019-03-16 15:36:44 has no hits.

LP03867.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:37:41 Download gff for LP03867.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 15247667..15249043 1..1377 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:35:16 Download gff for LP03867.complete
Subject Subject Range Query Range Percent Splice Strand
CG3517-RA 1..1149 99..1247 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:05:18 Download gff for LP03867.complete
Subject Subject Range Query Range Percent Splice Strand
CG3517-RA 1..1149 99..1247 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:49:51 Download gff for LP03867.complete
Subject Subject Range Query Range Percent Splice Strand
CG3517-RA 1..1149 99..1247 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:51:36 Download gff for LP03867.complete
Subject Subject Range Query Range Percent Splice Strand
CG3517-RA 1..1149 99..1247 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:50:24 Download gff for LP03867.complete
Subject Subject Range Query Range Percent Splice Strand
CG3517-RA 1..1149 99..1247 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 16:58:22 Download gff for LP03867.complete
Subject Subject Range Query Range Percent Splice Strand
CG3517-RA 45..1421 1..1377 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:05:18 Download gff for LP03867.complete
Subject Subject Range Query Range Percent Splice Strand
CG3517-RA 45..1421 1..1377 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:49:51 Download gff for LP03867.complete
Subject Subject Range Query Range Percent Splice Strand
CG3517-RA 45..1421 1..1377 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:51:37 Download gff for LP03867.complete
Subject Subject Range Query Range Percent Splice Strand
CG3517-RA 45..1421 1..1377 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:50:24 Download gff for LP03867.complete
Subject Subject Range Query Range Percent Splice Strand
CG3517-RA 45..1421 1..1377 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:37:41 Download gff for LP03867.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19423779..19425155 1..1377 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:37:41 Download gff for LP03867.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19423779..19425155 1..1377 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:37:41 Download gff for LP03867.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19423779..19425155 1..1377 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:49:51 Download gff for LP03867.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15249501..15250877 1..1377 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:57:27 Download gff for LP03867.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19164610..19165986 1..1377 100   Minus

LP03867.pep Sequence

Translation from 98 to 1246

> LP03867.pep
MQAHHAMPDFRCRNNCQHKECQRHAPLGIIDQHTQCKCLGEVNASSIFLE
NVLDLANTLAQVMIICGLHECKAKSTVDIITYAFLHYDQVCYCIDTTPKK
RLRKEDLFHELGKKSLMNKVEAHLAYAIIKRGFKAFYYEPKVDLTYDEQG
RPSYNDECVWVHAARKSAESYARFDGLSCAEQLAYEAKIKIAFKKFYDRM
QTRKRQPEGDDCNCCFCAKKRGHLVYAKEPTPCTSNKKKPKHVCPYCCKK
KQKQQYTHPARQPAKCPKCHKSRKFCCCTKMDFNLQWVKSIWERPDFNQY
YKNEIAEIEDRLVKGTCWLPPEPEEKLLDEGEGEEEEEAHQEMSPEALLA
LGGKTVPTIPDEGNGSPLATKQPSITEGEGET*

LP03867.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:31:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18459-PA 389 GF18459-PA 1..389 1..382 1747 85.2 Plus
Dana\GF13161-PA 599 GF13161-PA 43..208 51..214 304 36.9 Plus
Dana\GF13160-PA 634 GF13160-PA 44..209 51..214 302 36.1 Plus
Dana\GF24764-PA 429 GF24764-PA 19..212 36..223 249 33.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:31:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15963-PA 384 GG15963-PA 1..384 1..382 1974 96.1 Plus
Dere\GG20886-PA 614 GG20886-PA 40..207 49..214 284 31.6 Plus
Dere\GG14602-PA 433 GG14602-PA 26..219 36..223 260 33 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:31:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22389-PA 380 GH22389-PA 1..371 7..382 1649 84 Plus
Dgri\GH22756-PA 667 GH22756-PA 34..202 46..214 311 36.4 Plus
Dgri\GH15209-PA 427 GH15209-PA 23..216 36..223 267 33.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG3517-PA 382 CG3517-PA 1..382 1..382 2118 100 Plus
CG13872-PA 613 CG13872-PA 40..207 49..214 281 32.1 Plus
CG9173-PA 433 CG9173-PA 26..287 36..278 259 28.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:31:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24471-PA 385 GI24471-PA 1..363 1..367 1680 86.6 Plus
Dmoj\GI18534-PA 639 GI18534-PA 28..212 34..214 313 35.8 Plus
Dmoj\GI16728-PA 416 GI16728-PA 21..217 36..232 253 30.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:31:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11964-PA 384 GL11964-PA 1..358 1..359 1719 90.3 Plus
Dper\GL11716-PA 653 GL11716-PA 25..195 47..218 302 35.4 Plus
Dper\GL21992-PA 330 GL21992-PA 12..213 31..232 234 29.1 Plus
Dper\GL27315-PA 393 GL27315-PA 19..199 36..212 209 29 Plus
Dper\GL21473-PA 431 GL21473-PA 1..170 63..232 196 29.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:31:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17494-PA 384 GA17494-PA 1..358 1..359 1719 90.3 Plus
Dpse\GA12588-PB 644 GA12588-PB 34..204 47..218 302 35.4 Plus
Dpse\GA26284-PA 436 GA26284-PA 17..213 36..232 252 30.3 Plus
Dpse\GA27335-PA 365 GA27335-PA 14..210 36..232 228 28.9 Plus
Dpse\GA27030-PA 375 GA27030-PA 15..192 40..213 209 28.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:31:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26906-PA 382 GM26906-PA 1..382 1..382 2037 98.2 Plus
Dsec\GM19812-PA 611 GM19812-PA 40..226 49..236 291 31.1 Plus
Dsec\GM14216-PA 433 GM14216-PA 26..219 36..223 261 33.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:31:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20112-PA 382 GD20112-PA 1..382 1..382 2037 98.2 Plus
Dsim\GD13479-PA 179 GD13479-PA 26..170 36..176 220 35.9 Plus
Dsim\GD25304-PA 152 GD25304-PA 40..126 49..135 173 34.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:31:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24537-PA 385 GJ24537-PA 1..360 1..364 1691 88.7 Plus
Dvir\GJ21403-PA 663 GJ21403-PA 34..218 36..219 292 34 Plus
Dvir\GJ12472-PA 422 GJ12472-PA 7..207 27..219 269 33.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:31:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13478-PA 401 GK13478-PA 1..361 1..362 1715 88.1 Plus
Dwil\GK15685-PA 669 GK15685-PA 51..224 48..222 317 35.8 Plus
Dwil\GK17208-PA 449 GK17208-PA 26..212 35..217 235 29.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:31:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25127-PA 384 GE25127-PA 1..384 1..382 1970 96.1 Plus
Dyak\GE13826-PA 612 GE13826-PA 40..207 49..214 287 32.2 Plus
Dyak\GE20961-PA 433 GE20961-PA 18..219 26..223 263 33.3 Plus

LP03867.hyp Sequence

Translation from 98 to 1246

> LP03867.hyp
MQAHHAMPDFRCRNNCQHKECQRHAPLGIIDQHTQCKCLGEVNASSIFLE
NVLDLANTLAQVMIICGLHECKAKSTVDIITYAFLHYDQVCYCIDTTPKK
RLRKEDLFHELGKKSLMNKVEAHLAYAIIKRGFKAFYYEPKVDLTYDEQG
RPSYNDECVWVHAARKSAESYARFDGLSCAEQLAYEAKIKIAFKKFYDRM
QTRKRQPEGDDCNCCFCAKKRGHLVYAKEPTPCTSNKKKPKHVCPYCCKK
KQKQQYTHPARQPAKCPKCHKSRKFCCCTKMDFNLQWVKSIWERPDFNQY
YKNEIAEIEDRLVKGTCWLPPEPEEKLLDEGEGEEEEEAHQEMSPEALLA
LGGKTVPTIPDEGNGSPLATKQPSITEGEGET*

LP03867.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:14:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG3517-PA 382 CG3517-PA 1..382 1..382 2118 100 Plus
CG13872-PA 613 CG13872-PA 40..207 49..214 281 32.1 Plus
CG9173-PA 433 CG9173-PA 26..287 36..278 259 28.9 Plus