LP04080.complete Sequence
2264 bp (2264 high quality bases) assembled on 2004-03-24
GenBank Submission: BT012316
> LP04080.complete
CACTGGACGGCGTAGTTTGCAGTTTGAACAGAAAATGCGCAATTATCTCT
GGTTAGCAGTGCTCCTGGTGGTGGCCACCACCTGCATCAAGGCCAAGCCG
CTGGTCTCCTTCGGTGTCAGCTACCAGCAGCCTTACCTGGGCCCCCAGCC
AGAATCCTACTACTACGGAGGACGGTACCCGGCTGGTGGCTACTACAACA
ACTACCACAACAGCCCGGGTCCGTACGGCTACCCCTATCCGTATGCCAAT
CGCTATGGTGCCCTCGATCTCGGAATCGGCGCCCTGTCGCTATCGTCGTT
CCTGCTCTGATTCCGTATAAAAGCCAAAAGCCACAGCAAATAGATGCGCA
AATCACACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTGAGAC
GTTTGTGATACCCTACGACATGCGGGACATGCCACCGCTGCACCGCACCT
TCATCCGGCAGCGCATTCTGGCCGAGGAGCTTAGCCAGGATCAGGATGAG
GGTCACAAAGTGCCGCGGAGTCCAACAGTCACTAGCACCACCAGCAAGCT
GGGTCACTTCATCAGCGCCGAGCAGATGAAGCGACTGCGCTACTCCATAC
ACCTCAAGTTCCAGACATCGCGCTCCGGACGATTGTGCCTGCATACGGAC
ATCCGACTGCTGATCTCACGCCGCACCGATTGCGATACGGCGGCTGCACA
CGCGAAGGGCGTTTTGGAGGCACCCAATGAGCTGGTCACGGACACAATGA
TGCCCGCCGAGCCGCGCTACAGTGCGCGACAGGAGAGCGCCGGCAGGATT
TAGTAGCTACTGCAAGCCCTGGGCGGCACCTTCGAGCTGCTGCGCCGCCT
GTGCAAGCAGTTGCAGAACAAGTGGCAGCAGCGGGAGGCAAGGGAGCTCT
GGCAGTTGCCCAGATACCAATTGTAGAATGGGAAGGAGAAGGAGAGGAAG
CAGGATGAGAAACAGGATGATACGGAGGGCAGGTGGCGAAAGAAACTCCT
GTGTGTGCGTGTGTGTGTGACAACCAACCAATTGCTTTACTAGGATATCG
TTTAATTTATCCCTAAGCTTAGTTTCCTTTAATATTTTTTGGTATTTGAC
CTCGTGCGAGGTTTTGTTCGTTTAGTTTGAATTTGAACTACTGGAAAATG
TGTGCGAAAACATTGCGAAAGTAAAAAATGTTGAATATGAAAGCCAAGCC
ATCGAATTGGTCGGTCAGCCAGACGAGCGAACCAAAACTATCTGCATCCG
TATGTGCAACTGCAGTTGTATCTCTCTATCTGTATCTTTTGGGGTCCACA
ATACGCGGGTCAAGCGGCGCAACTAGCAATACAAAAAAAAAAAACTATGC
AATGTGTGAGTGTGAAAACGCAAGGGAGGTAACTACGTATATAGGGCATA
CATGCAGATACCACATACAATATATATATATATATATTTGAATATATATT
TATGTACCATAATCGTCGTGTAGCGTCAGCAATTTTAAAGGGCAATTTGT
GAAGGGGTTAGCGATTTGTAGTAGGTTTTTGGGAATAGAATCGATCGATC
AGTTGGTGTGCGCGCTCATATCGATCGTTGTTGTTAGTGTGTAGTGTGTT
TTAACCACAGAAATTTAAGAATACCATCGATTTCGTTGAGTGCAAGTTTG
AAATGAATTAACCCGCTAGTTTCGATTTTAATTTCGTATTTCCGTTCTGA
GAGTGTTTATTAAGCGTGCCTGTGATACGATATGAGCTGCATGTTGGGGG
TGTTTCTAATAGCTTTTAGTTAAATACAATTGACAACTACACATTGTCGT
TTTCCTTTTTTGTTCTGTTTACAAACTACGGATTAGTTTTATTACCCTAT
TTTGTTTTCCATATGCAATAGGTGCTTGAAGTTATTTGCACGCCATGCAA
TTGTCAAACTTCAAGCGCATCTGTACTTCAATAATATGACTACTATACGA
ATCTAGATGTGTTGAATTCTAACCAAATTCTTATTTTCCAATTGATACCT
GACTATAACTATTGTATAACAACGTACTACACAGCTATTAACAAATTTTC
AATCTAGGTGGTATGAAAAAACAAATGAAAAATTACGTATAAAAAAAAGA
AGAGATAAACTCGAAACAATAAAGAAATGGTCGATGGGGATAAGCATTTG
AAACCATCGACCGAAAATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAA
LP04080.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 20:44:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9005.a | 6212 | CG9005.a | 4313..6082 | 451..2220 | 8850 | 100 | Plus |
CG9005-RB | 6212 | CG9005-RB | 4313..6082 | 451..2220 | 8850 | 100 | Plus |
CG9005-RA | 5372 | CG9005-RA | 4313..5372 | 451..1510 | 5300 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:49:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2R | 21145070 | chr2R | 7506835..7508393 | 2219..658 | 7650 | 99.6 | Minus |
chr3L | 24539361 | chr3L | 16248708..16249018 | 362..52 | 1540 | 99.7 | Minus |
chr2R | 21145070 | chr2R | 7508467..7508675 | 659..451 | 1030 | 99.5 | Minus |
chr3L | 24539361 | chr3L | 16249080..16249135 | 56..1 | 265 | 98.2 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:48:53 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:49:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11619478..11621040 | 2220..658 | 7815 | 100 | Minus |
3L | 28110227 | 3L | 16259033..16259343 | 362..52 | 1555 | 100 | Minus |
2R | 25286936 | 2R | 11621114..11621322 | 659..451 | 1045 | 100 | Minus |
3L | 28110227 | 3L | 16259405..16259460 | 56..1 | 265 | 98.2 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:05:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25260384 | 2R | 11620677..11622239 | 2220..658 | 7815 | 100 | Minus |
3L | 28103327 | 3L | 16252133..16252443 | 362..52 | 1555 | 100 | Minus |
2R | 25260384 | 2R | 11622313..11622521 | 659..451 | 1045 | 100 | Minus |
3L | 28103327 | 3L | 16252505..16252560 | 56..1 | 265 | 98.2 | Minus |
Blast to na_te.dros performed on 2019-03-16 02:49:49 has no hits.
LP04080.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:50:39 Download gff for
LP04080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2R | 7506835..7508393 | 658..2219 | 97 | <- | Minus |
chr2R | 7508469..7508678 | 448..657 | 99 | == | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:39:09 Download gff for
LP04080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9005-RA | 3489..3894 | 448..853 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:38:21 Download gff for
LP04080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9005-RB | 3489..3894 | 448..853 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:40:05 Download gff for
LP04080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9005-RA | 3489..3894 | 448..853 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:14:53 Download gff for
LP04080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9005-RA | 3489..3894 | 448..853 | 99 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:22:47 Download gff for
LP04080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9005-RA | 3489..3894 | 448..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:39:08 Download gff for
LP04080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9005-RA | 4266..5328 | 448..1510 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:38:21 Download gff for
LP04080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9005-RB | 4266..6037 | 448..2219 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:40:05 Download gff for
LP04080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9005-RB | 4211..5982 | 448..2219 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:14:53 Download gff for
LP04080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9005-RA | 4266..5328 | 448..1510 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:22:47 Download gff for
LP04080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9005-RB | 4211..5982 | 448..2219 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:50:39 Download gff for
LP04080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11619479..11621040 | 658..2219 | 100 | <- | Minus |
2R | 11621116..11621334 | 438..657 | 95 | -> | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:50:39 Download gff for
LP04080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11619479..11621040 | 658..2219 | 100 | <- | Minus |
2R | 11621116..11621334 | 438..657 | 95 | -> | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:50:39 Download gff for
LP04080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11619479..11621040 | 658..2219 | 100 | <- | Minus |
2R | 11621116..11621334 | 438..657 | 95 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:40:05 Download gff for
LP04080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7506984..7508545 | 658..2219 | 100 | <- | Minus |
arm_2R | 7508621..7508839 | 438..657 | 95 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:51:04 Download gff for
LP04080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11620678..11622239 | 658..2219 | 100 | <- | Minus |
2R | 11622315..11622533 | 438..657 | 95 | -> | Minus |
LP04080.pep Sequence
Translation from 34 to 309
> LP04080.pep
MRNYLWLAVLLVVATTCIKAKPLVSFGVSYQQPYLGPQPESYYYGGRYPA
GGYYNNYHNSPGPYGYPYPYANRYGALDLGIGALSLSSFLL*
LP04080.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:53:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF10310-PA | 96 | GF10310-PA | 1..96 | 1..91 | 229 | 58.8 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:53:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG13484-PA | 91 | GG13484-PA | 1..91 | 1..91 | 300 | 93.4 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:06:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13053-PB | 91 | CG13053-PB | 1..91 | 1..91 | 502 | 100 | Plus |
CG13053-PA | 91 | CG13053-PA | 1..91 | 1..91 | 502 | 100 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:53:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA28371-PA | 109 | GA28371-PA | 5..109 | 3..91 | 214 | 58.1 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:53:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM24434-PA | 201 | GM24434-PA | 111..201 | 1..91 | 447 | 97.8 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:53:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD12501-PA | 199 | GD12501-PA | 109..199 | 1..91 | 445 | 97.8 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:53:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ12649-PA | 102 | GJ12649-PA | 1..102 | 1..91 | 149 | 44.1 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:53:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE22577-PA | 91 | GE22577-PA | 1..91 | 1..91 | 361 | 95.6 | Plus |
Dyak\GE22805-PA | 94 | GE22805-PA | 1..94 | 1..91 | 300 | 91.5 | Plus |
LP04080.hyp Sequence
Translation from 409 to 852
> LP04080.hyp
KKKKKKKKKTVVRMFVIPYDMRDMPPLHRTFIRQRILAEELSQDQDEGHK
VPRSPTVTSTTSKLGHFISAEQMKRLRYSIHLKFQTSRSGRLCLHTDIRL
LISRRTDCDTAAAHAKGVLEAPNELVTDTMMPAEPRYSARQESAGRI*
LP04080.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:47:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9005-PC | 1297 | CG9005-PC | 1160..1297 | 10..147 | 708 | 100 | Plus |
CG9005-PB | 1297 | CG9005-PB | 1160..1297 | 10..147 | 708 | 100 | Plus |
CG9005-PA | 1297 | CG9005-PA | 1160..1297 | 10..147 | 708 | 100 | Plus |