Clone LP04080 Report

Search the DGRC for LP04080

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:40
Well:80
Vector:pOT2
Associated Gene/TranscriptCG13053-RA
Protein status:LP04080.pep: gold
Sequenced Size:2264

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13053 2003-01-01 Sim4 clustering to Release 3
CG9005 2004-03-24 Blastp of sequenced clone
CG9005 2008-04-29 Release 5.5 accounting
CG9005 2008-08-15 Release 5.9 accounting
CG13053 2008-08-15 Release 5.9 accounting
CG13053 2008-12-18 5.12 accounting
CG9005 2008-12-18 5.12 accounting

Clone Sequence Records

LP04080.complete Sequence

2264 bp (2264 high quality bases) assembled on 2004-03-24

GenBank Submission: BT012316

> LP04080.complete
CACTGGACGGCGTAGTTTGCAGTTTGAACAGAAAATGCGCAATTATCTCT
GGTTAGCAGTGCTCCTGGTGGTGGCCACCACCTGCATCAAGGCCAAGCCG
CTGGTCTCCTTCGGTGTCAGCTACCAGCAGCCTTACCTGGGCCCCCAGCC
AGAATCCTACTACTACGGAGGACGGTACCCGGCTGGTGGCTACTACAACA
ACTACCACAACAGCCCGGGTCCGTACGGCTACCCCTATCCGTATGCCAAT
CGCTATGGTGCCCTCGATCTCGGAATCGGCGCCCTGTCGCTATCGTCGTT
CCTGCTCTGATTCCGTATAAAAGCCAAAAGCCACAGCAAATAGATGCGCA
AATCACACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTGAGAC
GTTTGTGATACCCTACGACATGCGGGACATGCCACCGCTGCACCGCACCT
TCATCCGGCAGCGCATTCTGGCCGAGGAGCTTAGCCAGGATCAGGATGAG
GGTCACAAAGTGCCGCGGAGTCCAACAGTCACTAGCACCACCAGCAAGCT
GGGTCACTTCATCAGCGCCGAGCAGATGAAGCGACTGCGCTACTCCATAC
ACCTCAAGTTCCAGACATCGCGCTCCGGACGATTGTGCCTGCATACGGAC
ATCCGACTGCTGATCTCACGCCGCACCGATTGCGATACGGCGGCTGCACA
CGCGAAGGGCGTTTTGGAGGCACCCAATGAGCTGGTCACGGACACAATGA
TGCCCGCCGAGCCGCGCTACAGTGCGCGACAGGAGAGCGCCGGCAGGATT
TAGTAGCTACTGCAAGCCCTGGGCGGCACCTTCGAGCTGCTGCGCCGCCT
GTGCAAGCAGTTGCAGAACAAGTGGCAGCAGCGGGAGGCAAGGGAGCTCT
GGCAGTTGCCCAGATACCAATTGTAGAATGGGAAGGAGAAGGAGAGGAAG
CAGGATGAGAAACAGGATGATACGGAGGGCAGGTGGCGAAAGAAACTCCT
GTGTGTGCGTGTGTGTGTGACAACCAACCAATTGCTTTACTAGGATATCG
TTTAATTTATCCCTAAGCTTAGTTTCCTTTAATATTTTTTGGTATTTGAC
CTCGTGCGAGGTTTTGTTCGTTTAGTTTGAATTTGAACTACTGGAAAATG
TGTGCGAAAACATTGCGAAAGTAAAAAATGTTGAATATGAAAGCCAAGCC
ATCGAATTGGTCGGTCAGCCAGACGAGCGAACCAAAACTATCTGCATCCG
TATGTGCAACTGCAGTTGTATCTCTCTATCTGTATCTTTTGGGGTCCACA
ATACGCGGGTCAAGCGGCGCAACTAGCAATACAAAAAAAAAAAACTATGC
AATGTGTGAGTGTGAAAACGCAAGGGAGGTAACTACGTATATAGGGCATA
CATGCAGATACCACATACAATATATATATATATATATTTGAATATATATT
TATGTACCATAATCGTCGTGTAGCGTCAGCAATTTTAAAGGGCAATTTGT
GAAGGGGTTAGCGATTTGTAGTAGGTTTTTGGGAATAGAATCGATCGATC
AGTTGGTGTGCGCGCTCATATCGATCGTTGTTGTTAGTGTGTAGTGTGTT
TTAACCACAGAAATTTAAGAATACCATCGATTTCGTTGAGTGCAAGTTTG
AAATGAATTAACCCGCTAGTTTCGATTTTAATTTCGTATTTCCGTTCTGA
GAGTGTTTATTAAGCGTGCCTGTGATACGATATGAGCTGCATGTTGGGGG
TGTTTCTAATAGCTTTTAGTTAAATACAATTGACAACTACACATTGTCGT
TTTCCTTTTTTGTTCTGTTTACAAACTACGGATTAGTTTTATTACCCTAT
TTTGTTTTCCATATGCAATAGGTGCTTGAAGTTATTTGCACGCCATGCAA
TTGTCAAACTTCAAGCGCATCTGTACTTCAATAATATGACTACTATACGA
ATCTAGATGTGTTGAATTCTAACCAAATTCTTATTTTCCAATTGATACCT
GACTATAACTATTGTATAACAACGTACTACACAGCTATTAACAAATTTTC
AATCTAGGTGGTATGAAAAAACAAATGAAAAATTACGTATAAAAAAAAGA
AGAGATAAACTCGAAACAATAAAGAAATGGTCGATGGGGATAAGCATTTG
AAACCATCGACCGAAAATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAA

LP04080.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:44:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG9005.a 6212 CG9005.a 4313..6082 451..2220 8850 100 Plus
CG9005-RB 6212 CG9005-RB 4313..6082 451..2220 8850 100 Plus
CG9005-RA 5372 CG9005-RA 4313..5372 451..1510 5300 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:49:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 7506835..7508393 2219..658 7650 99.6 Minus
chr3L 24539361 chr3L 16248708..16249018 362..52 1540 99.7 Minus
chr2R 21145070 chr2R 7508467..7508675 659..451 1030 99.5 Minus
chr3L 24539361 chr3L 16249080..16249135 56..1 265 98.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:48:53 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:49:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11619478..11621040 2220..658 7815 100 Minus
3L 28110227 3L 16259033..16259343 362..52 1555 100 Minus
2R 25286936 2R 11621114..11621322 659..451 1045 100 Minus
3L 28110227 3L 16259405..16259460 56..1 265 98.2 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:05:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 11620677..11622239 2220..658 7815 100 Minus
3L 28103327 3L 16252133..16252443 362..52 1555 100 Minus
2R 25260384 2R 11622313..11622521 659..451 1045 100 Minus
3L 28103327 3L 16252505..16252560 56..1 265 98.2 Minus
Blast to na_te.dros performed on 2019-03-16 02:49:49 has no hits.

LP04080.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:50:39 Download gff for LP04080.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 7506835..7508393 658..2219 97 <- Minus
chr2R 7508469..7508678 448..657 99 == Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:39:09 Download gff for LP04080.complete
Subject Subject Range Query Range Percent Splice Strand
CG9005-RA 3489..3894 448..853 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:38:21 Download gff for LP04080.complete
Subject Subject Range Query Range Percent Splice Strand
CG9005-RB 3489..3894 448..853 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:40:05 Download gff for LP04080.complete
Subject Subject Range Query Range Percent Splice Strand
CG9005-RA 3489..3894 448..853 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:14:53 Download gff for LP04080.complete
Subject Subject Range Query Range Percent Splice Strand
CG9005-RA 3489..3894 448..853 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:22:47 Download gff for LP04080.complete
Subject Subject Range Query Range Percent Splice Strand
CG9005-RA 3489..3894 448..853 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:39:08 Download gff for LP04080.complete
Subject Subject Range Query Range Percent Splice Strand
CG9005-RA 4266..5328 448..1510 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:38:21 Download gff for LP04080.complete
Subject Subject Range Query Range Percent Splice Strand
CG9005-RB 4266..6037 448..2219 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:40:05 Download gff for LP04080.complete
Subject Subject Range Query Range Percent Splice Strand
CG9005-RB 4211..5982 448..2219 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:14:53 Download gff for LP04080.complete
Subject Subject Range Query Range Percent Splice Strand
CG9005-RA 4266..5328 448..1510 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:22:47 Download gff for LP04080.complete
Subject Subject Range Query Range Percent Splice Strand
CG9005-RB 4211..5982 448..2219 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:50:39 Download gff for LP04080.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11619479..11621040 658..2219 100 <- Minus
2R 11621116..11621334 438..657 95 -> Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:50:39 Download gff for LP04080.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11619479..11621040 658..2219 100 <- Minus
2R 11621116..11621334 438..657 95 -> Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:50:39 Download gff for LP04080.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11619479..11621040 658..2219 100 <- Minus
2R 11621116..11621334 438..657 95 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:40:05 Download gff for LP04080.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7506984..7508545 658..2219 100 <- Minus
arm_2R 7508621..7508839 438..657 95 -> Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:51:04 Download gff for LP04080.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11620678..11622239 658..2219 100 <- Minus
2R 11622315..11622533 438..657 95 -> Minus

LP04080.pep Sequence

Translation from 34 to 309

> LP04080.pep
MRNYLWLAVLLVVATTCIKAKPLVSFGVSYQQPYLGPQPESYYYGGRYPA
GGYYNNYHNSPGPYGYPYPYANRYGALDLGIGALSLSSFLL*

LP04080.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:53:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10310-PA 96 GF10310-PA 1..96 1..91 229 58.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:53:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13484-PA 91 GG13484-PA 1..91 1..91 300 93.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:06:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG13053-PB 91 CG13053-PB 1..91 1..91 502 100 Plus
CG13053-PA 91 CG13053-PA 1..91 1..91 502 100 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:53:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28371-PA 109 GA28371-PA 5..109 3..91 214 58.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:53:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24434-PA 201 GM24434-PA 111..201 1..91 447 97.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:53:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12501-PA 199 GD12501-PA 109..199 1..91 445 97.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:53:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12649-PA 102 GJ12649-PA 1..102 1..91 149 44.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:53:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22577-PA 91 GE22577-PA 1..91 1..91 361 95.6 Plus
Dyak\GE22805-PA 94 GE22805-PA 1..94 1..91 300 91.5 Plus

LP04080.hyp Sequence

Translation from 409 to 852

> LP04080.hyp
KKKKKKKKKTVVRMFVIPYDMRDMPPLHRTFIRQRILAEELSQDQDEGHK
VPRSPTVTSTTSKLGHFISAEQMKRLRYSIHLKFQTSRSGRLCLHTDIRL
LISRRTDCDTAAAHAKGVLEAPNELVTDTMMPAEPRYSARQESAGRI*

LP04080.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:47:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG9005-PC 1297 CG9005-PC 1160..1297 10..147 708 100 Plus
CG9005-PB 1297 CG9005-PB 1160..1297 10..147 708 100 Plus
CG9005-PA 1297 CG9005-PA 1160..1297 10..147 708 100 Plus